Basic Information

Insect: Pterostichus niger
Gene Symbol: chn
Assembly: GCA_947425015.1
Location: OX380347.1:30069988-30073707[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.9 8.3e+02 2.3 0.4 1 11 164 174 164 187 0.69

2 9 0.00077 0.11 14.5 0.7 1 23 290 312 290 312 0.98

3 9 0.0017 0.24 13.5 4.0 1 23 318 341 318 341 0.96

4 9 0.0088 1.2 11.2 3.7 1 23 444 466 444 466 0.98

5 9 0.14 20 7.4 0.1 1 23 470 493 470 493 0.96

6 9 5.7 8.1e+02 2.3 0.2 3 23 498 518 497 519 0.87

7 9 0.0058 0.82 11.8 2.8 1 23 670 692 670 693 0.95

8 9 4.7e-05 0.0067 18.3 1.0 1 23 741 763 741 763 0.98

9 9 0.43 61 5.9 2.0 1 22 910 931 910 933 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.9	8.3e+02	2.3	0.4	1	11	164	174	164	187	0.69
2	9	0.00077	0.11	14.5	0.7	1	23	290	312	290	312	0.98
3	9	0.0017	0.24	13.5	4.0	1	23	318	341	318	341	0.96
4	9	0.0088	1.2	11.2	3.7	1	23	444	466	444	466	0.98
5	9	0.14	20	7.4	0.1	1	23	470	493	470	493	0.96
6	9	5.7	8.1e+02	2.3	0.2	3	23	498	518	497	519	0.87
7	9	0.0058	0.82	11.8	2.8	1	23	670	692	670	693	0.95
8	9	4.7e-05	0.0067	18.3	1.0	1	23	741	763	741	763	0.98
9	9	0.43	61	5.9	2.0	1	22	910	931	910	933	0.86

Sequence Information

Coding Sequence: ATGGAGGTGGCAATGCCCGTGGCTGGCGCTGGCTCGACTACAGTGACGGCCATGGACAGCTACGAAGACATGTTCAAAGAAATCACCAGGAAACTGTATGGCGAAGACGGACTTCCAGACTTAGCTTCTGGCGAGAAACTCACAGGAATCACTACTTCAGTCGAACGAGGCCTTACCGGAATAGATTACGACGTCGATCCACCAGTCTTCAAACCGGAAGAACACATCACAGCATTCGGTTTGGCAGCGCTTATGCAGAACGGATTTCCCCCTGCAGGCATCTTAAATCCGAATTTCCAACAAGCGAAGCCGAGTACTGCAGCAGAAGATAAATGGATATCAAATGATGATTACTTGCAATGGACGCAATCAAAAATAGCAAGTTATAATCCATCGCAGAAATTATTTCGCTGTGCGGATTGTGATTGCGTCGGGTTTTTGACTCGAGTTGCTGAACATTGGCTCGGTACGCACGCTAATTTACGGGTGTTCCAATGTCCACAGTGTCCGTACGCCAGCGCATGGGCACGTTGTGTTCGAATGCATCTTGCACGTCAACACAATGTTACCAGCGAAGAAACTGTAGACACTTTTTTAAAGGAAAATCCTGTGTTTCATGAAATAACACGGTATCTTCAACGACTGAAAAATAAATTTGAAGGAGGAAATTACTCTAAGGGACAATCCTCAACCGCCGTTTCTGAACACTTTCCATCAAATGGTCACTTAAGTGCATCGCCCAGACTTAACGGAAATTCTAGTGCACCTGCGTCGTCATCTTCGGAGACCTGCGCACCTGAAACTTCTAGCTCAGGCAGTAGTAGTACTGCGGTCAGTGGATGCGGATCGAACGGAAATTCAAAACGCTACAGTTGTAGTTATTGTCCATATGCCACCGACCGGAGGGATTTATTTACACGACATGAGAATATTCACAGAGAAGAAAAGCCATTCCAATGTTATGTCTGCCAAAAACAATTTAATCGTGCGGATCATGTTAAGAAACATTTCTTGCGAATGCATCGAGAACATCCATATGATTTGAACCGTATTAGGCGTCATCCTCCAAAAAATGCATCTGGCATGTCTTACTACCATAAATATAATAATGGTAGCTCGACAAATTCATCTCCTACCGAGTCTGTGGGTAGCATGCAATCAAGCATGCAACATCAGCTAACAATACCAAATGGATTTGGTGGAATGGCCCGGGTTGAACATAATATACCAACTGCCAAACCTGCAAGTCCACAACCTTCTAAGACTCCTAGTAATGTTAAGTCTAGTTCCTCAGGAAAATCAAGTTCGAAGAAGAAAGGAGAAAAGAGATACTCTTGTTGTTACTGTTCTTGGTCCGGTGTGGACAACTGGTGCCTGAAACGACATCTAAATACACACTTAAAGCCATTTGTGTGTGGTTTATGCGATTATAAAGCTGCGAGATCGGAACGATTAGCTACACATGTGCTGAAAGTTCATAACAAAAGAGCTTGTGGAAGATGTTTATTTATGGCTGATGATCAAGTACAACTGGCCGCACATCAACAGGAACATCACCCGTTGGAACAGCGTAACAATCGATCTTCTAATGTCTTACGTAACAATAGCTTTAATAGTAGTAACCAGTCCAATCAACCATTCGGACACAGTCAGTCCCTGGGATCAAATTTAAAACCATATGAACTAAGTGCAGCAGCAGCAATTTTGCAACATGGAAGCAGGTTGTTACCGATGGCGGGCAGCATTATATCAAATAGCGACACCAAACCTTGGAAACCATACACTCCTAAACAACATGGAGCTGCACGGCTTTTTAACTACATGGAAGCTAGTGATGGTTCTGATCCCGAATGTGATACAACTGCTAGTAACGACGACATGAATAGAATGTCAACGAACTCAACAAATCAGAGGAACCAGTCGGATTTTCCTGAAGCGGGAGATGTTGGAAATAATCACCAAGGAGAGTTTGAAGATGAATATGAGGAAGAAATGGAACTTCCACTTTTCATATGCCGAGAATGTGGCTGCGAATTTATAGACGACACCTCCTTGGAAACCCACCAGTACACACATCATCGTGTCGAAAAAATTACCTCATCTCCCGCAAATCCCAAAATGAATCGAAAGTTACTAAAGAAAAACGCAGCCAAAACTAACGCAACATTAGAAAAAATTAACTTAGATTCTAAGGAAAATGTAAATCCAAAGTTTACTAATTATAATTGTTCTATTTGTAAATTAAATTTTTCCAGTCAAGTAAATATAATGACTCACATGCGATCACATATTACATTAAACCATAATAATGCGGAAGAACAATATAATAACAAGAAACAAGTCCTAGTCAATAATCCGAGAAAATCTAAATGTATTAATGATATGGCTGGTGGACAGGAAAGCAACAACGGTTTGGGTTATTGTTACCAGGATGGTCAGAATGTGAATGGAACGTGTAAAAGATCCCGAAAGCAAAGTCAACCACGGAAAGTAGTGCCTCCGTTGTGTGAAAATCCAGAGATTCAAGTAAAGAAACGATCAAGCAGCAAACATAGGAGTAATACCAGAAATGTATTGGCTAGATTGAAAGATAAATATATGTCGCAATTGATGAACAGAAAAGGATTAAGCTGTCATTTATGTAAGAAACGAAAGTTCGTATTTACATTTCGCACAAGGGGAAGTCTTGCGCTGCATTGCTTCTGGCGGCACTCAGAAACCAAACCTTTCGAGTGTGAGCACTGCAGCATGCGATTCCAGCACCGGTACCAGGCTTTACTTCACGCGAGCGAAGTTCACGTGGGCAATTTAGGTCCTGGAAAATTAACAGCTAGTGCCGCCACCACTGCCATCTCTATTGAAGCTGCTGTCAACGGAGACACCGGTGCAACCACAGATGAACATATAGTGCCTAATAAGCTACAAACTAAGGAACCAATTCTTCGTAGTGTGACTGTACCTGCTGCCTCTGCCTCTGAAAATCCGCAAGTTACAACAGATACACTTTTGACAACAAATGTACCTGATAATTCAACGTCTGCCCTAAGTGCAGACAAGTTGAGTATGCACCCGTACATGGAGCACCCCATGTTGAATTCAAATATACCTATAAACAACCATATACCTATAGTCATACCGACATTTCCACCTTCCTGA
Protein Sequence: MEVAMPVAGAGSTTVTAMDSYEDMFKEITRKLYGEDGLPDLASGEKLTGITTSVERGLTGIDYDVDPPVFKPEEHITAFGLAALMQNGFPPAGILNPNFQQAKPSTAAEDKWISNDDYLQWTQSKIASYNPSQKLFRCADCDCVGFLTRVAEHWLGTHANLRVFQCPQCPYASAWARCVRMHLARQHNVTSEETVDTFLKENPVFHEITRYLQRLKNKFEGGNYSKGQSSTAVSEHFPSNGHLSASPRLNGNSSAPASSSSETCAPETSSSGSSSTAVSGCGSNGNSKRYSCSYCPYATDRRDLFTRHENIHREEKPFQCYVCQKQFNRADHVKKHFLRMHREHPYDLNRIRRHPPKNASGMSYYHKYNNGSSTNSSPTESVGSMQSSMQHQLTIPNGFGGMARVEHNIPTAKPASPQPSKTPSNVKSSSSGKSSSKKKGEKRYSCCYCSWSGVDNWCLKRHLNTHLKPFVCGLCDYKAARSERLATHVLKVHNKRACGRCLFMADDQVQLAAHQQEHHPLEQRNNRSSNVLRNNSFNSSNQSNQPFGHSQSLGSNLKPYELSAAAAILQHGSRLLPMAGSIISNSDTKPWKPYTPKQHGAARLFNYMEASDGSDPECDTTASNDDMNRMSTNSTNQRNQSDFPEAGDVGNNHQGEFEDEYEEEMELPLFICRECGCEFIDDTSLETHQYTHHRVEKITSSPANPKMNRKLLKKNAAKTNATLEKINLDSKENVNPKFTNYNCSICKLNFSSQVNIMTHMRSHITLNHNNAEEQYNNKKQVLVNNPRKSKCINDMAGGQESNNGLGYCYQDGQNVNGTCKRSRKQSQPRKVVPPLCENPEIQVKKRSSSKHRSNTRNVLARLKDKYMSQLMNRKGLSCHLCKKRKFVFTFRTRGSLALHCFWRHSETKPFECEHCSMRFQHRYQALLHASEVHVGNLGPGKLTASAATTAISIEAAVNGDTGATTDEHIVPNKLQTKEPILRSVTVPAASASENPQVTTDTLLTTNVPDNSTSALSADKLSMHPYMEHPMLNSNIPINNHIPIVIPTFPPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01226242;
90% Identity: iTF_01226242;
80% Identity: -