Pnig012578.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380347.1:14430522-14433977[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.016 2.2 10.4 4.6 2 23 206 228 206 228 0.91 2 10 7.5 1.1e+03 2.0 0.6 9 23 282 297 280 297 0.89 3 10 9.3 1.3e+03 1.7 7.6 3 23 393 414 392 414 0.95 4 10 0.099 14 7.9 0.1 2 23 475 497 475 497 0.93 5 10 8.1e-05 0.011 17.6 3.4 2 23 562 584 561 584 0.96 6 10 0.012 1.7 10.7 3.6 2 23 670 692 669 692 0.96 7 10 0.12 17 7.6 4.2 2 23 706 728 705 728 0.92 8 10 0.00073 0.1 14.6 0.4 2 23 805 827 805 827 0.93 9 10 2 2.9e+02 3.7 1.7 1 23 898 920 898 920 0.97 10 10 0.00049 0.07 15.1 1.7 2 23 964 986 963 986 0.93
Sequence Information
- Coding Sequence
- ATGATGACCTCGGCACCCACCCCGGCCCCGACGTGCCCCGCCACCGGCTATCCGTCGCCGTTGCCATCCCCGTCGCCCGCAGAAGACGACAGCACGACGCTGCGGAAGCGCCCCGCCGGTCAAACTGTCCAAGCCGATCCATGCAAGAAGCGCCGAAAGCAGGCCACTCCcatccgcatctccaccaccggcattggcattggcatcggcaccgccatcggcaacaccaacatcaacgccaacgctgctgacgtcagcctcgatatcggtctcggcCTGTGCTACGAAGGTAAGCTTCCCTCGTTATACTCTCCTGATCCTAATCCTGATCCTGACCCTGATCCTGACCGTAATCCTGATATGGACCCTCACATCAAAGTGGAGCACAGTTCCACCCAGCCCGCTAACCCCACCAGTCCGTCGCTGCCCGTCAATTTGTCCGGAGGCCAGAACTTCCCGCCATGGCTGTCTGACGTCCAGACCAAAACCAGTGACTGGTTGAATACCTCGCACACCTCGCCAGCCATTGCCAACCACAGCTTCTACGTACCTGTTCCTGTCAGCCGCGCCGTCACCGCGTCGCAACCGCCCATTCGGATATTCAACCCGGAGGCTTACTGCGAACTATGCAACAAAGAGTTCTGTAACAAGTATTTCTTGAAAACACACAAGGCAAACAAACATAGGATATATACAGATCCAGCCACTTCCGATGCTACTGGTCTATCAGTGAATGTTCCTTCATACACTGCATCCGTCATGAAGAAACCTAACATCACCATGTCTGACGGACTAGCTGTAGCTACACTGAAGAACACTGGAACGTCGCATTCAGATTTCATGAGCTTCTCCAGTAAAATGATGCTCAAAACGCATAGGGTGAGTGTGCATGGCGCCGTGGACCAAGACGCGAGCGCAGAGGCCGAGGCGCTGGCCCTGGGATTAGCGGTGGAGGAACGTGACCCCGATCTTGCCGATATGGGAGGAGCGCCAGCATCTGCCATCTCCACTGCAACAGTGCCCGACAAAGACAACATGCTTTACAAAAATGAACAACTGCCAACAATGGATCAAGATGAAAACTCGGAAAATGCCGTTATACATCAACGAGACAGAGATCTTGATTTCTCTGCTAATCGTACACGTCGTCTTGGCATCATGAATCCAGAAGCTTTCTGTGAGATTTGTTGCAAAGAATACTGCAATAAATATTTCCTACGCACGCATAAAATGAAAAGACATGGAATACTAATTCCAGATGAAAATTCCAAAGATAATCAGAAAGATTTTAAATTAGAATTATCAATTAGCAATAATTGGTACCAAATACAGACGAGCCCGTTAAATTTAATTATGGGCGAACAAAACACAAACAGTTCCGGGTCGTGTAGTGAAAGAAAGTCATCACCAGCAAACGAAAATGAATGTGAAATATGTGGAATGCGTTTTCAGACGTTATATCTCGCACAATTACATTTTGCCACAGCTCACTCACAACACAAACCATCCAATCATTCAAGCAACAACGAAGAATTCGTAGCCGCATTGTCCGCAAACAATAATGATAAACAACCGCCGGATTCCATCAGCGAAGATTTACAGAAACTACAGACGATGATTCTACAATTAAACGACCTAGACGTCAGCAAAGTTGGTGTAGGTAGTAGCGGATCAGCACTGTGCACGTGTAGTATGTGTGGAAAAGAATTCGAAAATAGATATTACTTACATGCTCACTTAATGACTGAACACGGCGTTTTATTAGAGAACAACAAACAGTTTGAAATGGACAACGGGAGCGAAATGACACCGACACCAGAAGTACAAATTGTAGACAATCAGCTGCAGCCGAAAATTCCTATCTCCTTGTCCATAGACAAAAAGGATGATTCCAACGGTTTCATGAGTGCAGAGAAGGCGAGTCGAAGTAACGCGAACACGAACGGCACCAGTAGTTCCGTTGGTTCCGAGAGACGGTCCTCTGTTACAATGACACCGGCCAACAGCTATTGTGAGATCTGTAATAAAGAATTGTGCAACAAGTACTTTATGAAAACGCATATGCAACGAATGCATGGCATCGAGATTGAAAACGGTGCGCAGATTGGCGGTGTTGTCTGTAATATATGCAACAAGGAATTGTGTAGCAAGTATTTCCTGCGAGTGCACAAACATAACACACATGGCATTGTGCAGGACAACATTAGCGTGGGTGCTGGTGTTGGTGGTATTGTCGGTCCGAACCAAACGCGTCCACCGAACATGGACATGGATCCACAAGGTGTAGGTGTAGTCCCACCATTGCCACCTACCGCCGCTACAGACATATCCAGTACTCCAGGCTCAGACTCTGCTCTCAAGCTGGGAGACTTGTCCGACTTGAGCAACCGGTACTTTACCCATTTCACTGAAGTGTGCACAATTTGTAGTCGACGATTCCGAAGCACAAAGTGGCTGAAAGCACACTTACTTGGTGACCACGGCAAAGCTGGTACAGAGAAATGGAACGAGTTGGAGTTACAGTTACAACAGTCGTTTGGCCAACAACAACGTAAGAGTGCCAGTGTAGGCGATCGGTCAAGTCCCACTCTGCGTATACCAAATGGTGGACAAGATAATACAAAGTCTGAAGGCGGCATGCAAAATGTGCTATCTAGCATATTCGGAACAGATGATTCGAATGTCAAACAATATCACTGTTCATTCTGTTCGTTTTCAACACCAGTGCTGGCTTTTCTGTTTGTGCACGAACGATCGCATTCAGTGCCAGCACAAGCACCAACTTCAACTCAAACTCCAACTCCAGCTCCAGCTCCAGCAGTGAACAATACGTCCAACATTGGGAACAGTACGGTGAATACAGCAACAACATGTACGATATCGCCGCTGTACTGCGCCGTATGTAATCAGTCGTTCCGACAGCCCGAGCAACTGCACCATCACATTGTGTCGCAGCATACGTTCCTGTCGCTCTCCTCGTTCTTCGGTAACGTACGTGAGCCATCGAACCTGGCCGTCGAAGGTTCAGTGAAGCCAATAGAACAACAACAACAGTTACATTGTTTAAAGTGTGGTAGTGTGAGCAGTGTGAGCGCGGACGTAAGCGTCACGTTAAATGATGTGTCGAAGCAACGGCAATTACCGGCCACGTACGCACTGCCGCAGCCACAATCGCAACAGCAACAGCACAAAGCCAAGTACATGATGCAGGCATTCCTGATGGATGAACCGGCGCCGTTGACAACGACGACGATGGGGACTGATGCGGCCGTGCAGGGAGTAAACTCGCTCATGGGAACAGTGGCACTCGCTAACGGCGACGAGGAACACCAACATACAACGGATGCAACTTCAACGGATCAGAGTCGAAGATTCGCACCATCCATTGTCTTCCTTCCCGTCCTAGAGAAATTAACTGCTCCTCTCACTGTGTCATTTACACTCACTCCTGCCTAG
- Protein Sequence
- MMTSAPTPAPTCPATGYPSPLPSPSPAEDDSTTLRKRPAGQTVQADPCKKRRKQATPIRISTTGIGIGIGTAIGNTNINANAADVSLDIGLGLCYEGKLPSLYSPDPNPDPDPDPDRNPDMDPHIKVEHSSTQPANPTSPSLPVNLSGGQNFPPWLSDVQTKTSDWLNTSHTSPAIANHSFYVPVPVSRAVTASQPPIRIFNPEAYCELCNKEFCNKYFLKTHKANKHRIYTDPATSDATGLSVNVPSYTASVMKKPNITMSDGLAVATLKNTGTSHSDFMSFSSKMMLKTHRVSVHGAVDQDASAEAEALALGLAVEERDPDLADMGGAPASAISTATVPDKDNMLYKNEQLPTMDQDENSENAVIHQRDRDLDFSANRTRRLGIMNPEAFCEICCKEYCNKYFLRTHKMKRHGILIPDENSKDNQKDFKLELSISNNWYQIQTSPLNLIMGEQNTNSSGSCSERKSSPANENECEICGMRFQTLYLAQLHFATAHSQHKPSNHSSNNEEFVAALSANNNDKQPPDSISEDLQKLQTMILQLNDLDVSKVGVGSSGSALCTCSMCGKEFENRYYLHAHLMTEHGVLLENNKQFEMDNGSEMTPTPEVQIVDNQLQPKIPISLSIDKKDDSNGFMSAEKASRSNANTNGTSSSVGSERRSSVTMTPANSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIVQDNISVGAGVGGIVGPNQTRPPNMDMDPQGVGVVPPLPPTAATDISSTPGSDSALKLGDLSDLSNRYFTHFTEVCTICSRRFRSTKWLKAHLLGDHGKAGTEKWNELELQLQQSFGQQQRKSASVGDRSSPTLRIPNGGQDNTKSEGGMQNVLSSIFGTDDSNVKQYHCSFCSFSTPVLAFLFVHERSHSVPAQAPTSTQTPTPAPAPAVNNTSNIGNSTVNTATTCTISPLYCAVCNQSFRQPEQLHHHIVSQHTFLSLSSFFGNVREPSNLAVEGSVKPIEQQQQLHCLKCGSVSSVSADVSVTLNDVSKQRQLPATYALPQPQSQQQQHKAKYMMQAFLMDEPAPLTTTTMGTDAAVQGVNSLMGTVALANGDEEHQHTTDATSTDQSRRFAPSIVFLPVLEKLTAPLTVSFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -