Pnig026827.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380346.1:18970833-18986613[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.9 6.9e+02 2.5 1.2 1 18 52 69 52 69 0.92 2 12 0.00024 0.034 16.1 2.9 1 23 298 320 298 320 0.98 3 12 0.0065 0.92 11.6 0.6 2 21 328 347 327 347 0.95 4 12 2.6e-05 0.0036 19.2 2.1 1 23 355 377 355 377 0.99 5 12 2.8e-05 0.0039 19.0 4.6 1 23 383 405 383 405 0.98 6 12 0.00021 0.029 16.3 4.0 1 23 411 433 411 433 0.97 7 12 4.9 6.9e+02 2.5 1.2 1 18 561 578 561 578 0.92 8 12 0.00024 0.034 16.1 2.9 1 23 807 829 807 829 0.98 9 12 0.0065 0.92 11.6 0.6 2 21 837 856 836 856 0.95 10 12 2.6e-05 0.0036 19.2 2.1 1 23 864 886 864 886 0.99 11 12 2.8e-05 0.0039 19.0 4.6 1 23 892 914 892 914 0.98 12 12 0.00021 0.029 16.3 4.0 1 23 920 942 920 942 0.97
Sequence Information
- Coding Sequence
- ATGTATGTGTTGAAAAATATTTGTTTCGTGTGTTTAACGGATACTGACAAGAGGTTAAAGAAAGTGTTACACTATAATACAGCAGATGAAGTATTTACAATTGTTAAATATGCTCTACCAGAACTTACGATTTTAAATCCGGAACATTCTGTATATATTTGTTCCTCGTGCCACACAACACTTCGTTCTTATTCCGAGTTTAAGAAAAAGTGTTTGGACAACTATAGTCGTTTCACTGGTTATATAAAAATATTGCAAGGAAGCAACACCACCTCGGATAAGAGTTCCAGCGAATTACAAATCCGAGTAATTAATTGTGAGCAACTGATAAAACATGAGAATGACATTCATTCAATTATTGAAGAGAATGAAGATGCATTTATGTCATGGGAAAAACAACATGATCTGAAGACTGAGGTCGATGATTCCATCGATATAGAAGAAGAACCTCTTGCATACCAGCAACTTTTGAAGATCGAATCAGTATCAGATGATATACAAGATGCTGGTTCAAGTGTTCTTAATGAAAACATCAATGCGTTAGATCAGAAAACTATAATAGAAGATTATATCGTCGTCAAAGACGAATTGGATGTCGACGAAGTTTTTGTTATCAAATTAAATCCTCCAGATGATAATGAAGATGCACTGCTGCCATCAGAAGAACAAGTTGATTGCAATATTGTTGTGGAAAATAAAATCGACGTCGAGGAAGAATCTCTTGCATCTAAAGACAGCGCAGACCGAGAACTTGCCCAGCAACTTGTCTGTACACGCAGCGAGTCTGGATCTGATGATGAACAAGATGGTGGTTCAAGTGTTACTAGTGAAGTTAGCAATGCATTGGATAAGGATGAAACTAATTCCAATACAGACACAGACAGTCAAGAGTTTCAATGTTCAGTGTGTAAAGAAGTATTTACAGATAAAGTTATGTTCCATAGCCATTTGAAAAGTCATCTTAAAAATATAACAAGTACAGAATGTTTAATTTGTAATAAAAAATTAAGCACAAAAAAGACCTTGAGCGAACATATGAAATGTGATTTAGGTATTAAAGATTACGAATGCTCAATATGCAAAAAGAAATTTTTTCGAAATGAACGATTGAGAGTACATATAAAAATGCATGAAGGTATAAAAGATCATGAATGTTCAATTTGTAAAAAGAAGTTTACACAAAAATATGATGTAACCAGACATCTAAAATCGCATGAGGGTATTAAAGATCACGAATGTTTAGTTTGCAAAAGGAAATTTATACAAAGGATTCATTTGCAAGTGCATATGAAAATGCATGCAGCTCCACATAATCAAAATTGTGAAAATGATGATGATCGTGCAATTTTTTTGGATGATTCAGAACAGAATACAGATACAGAATATGAGAATGACAAACAAATGTGTTTAGATTTAAATGAATGTGTCACTGAAAAGACGTGTGAAAATGATATAATTCCATCAAAACTTGAAAGAGAAGAAAACGAAGAAACTAATGTACTCGATATTCCAAAATCTACGGTATACGATATAATGAGACTCTATGGAGAGCCTTCTGAAACTGACATACCTGGAAAACCAAAAGAACATTCGCGCAAAGTAACACCTAGAGCTCAAAGAACCCTTAAAATTATTTGCAGaagaggaataacgACGATTTTAAATCCGGAACATTCTGTATATATTTGTTCCTCGTGCCACACAACACTTCGTTCTTATTCCGAGTTTAAGAAAAAGTGTTTGGACAACTATAGTCGTTTCACTGGTTATATAAAAATATTGCAAGGAAGCAACACCACCTCGGATAAGAGTTCCAGCGAATTACAAATCCGAGTAATTAATTGTGAGCAACTGATAAAACATGAGAATGACATTCATTCAATTATTGAAGAGAATGAAGATGCATTTATGTCATGGGAAAAACAACATGATCTGAAGACTGAGGTCGATGATTCCATCGATATAGAAGAAGAACCTCTTGCATACCAGCAACTTTTGAAGATCGAATCAGTATCAGATGATATACAAGATGCTGGTTCAAGTGTTCTTAATGAAAACATCAATGCGTTAGATCAGAAAACTATAATAGAAGATTATATCGTCGTCAAAGACGAATTGGATGTCGACGAAGTTTTTGTTATCAAATTAAATCCTCCAGATGATAATGAAGATGCACTGCTGCCATCAGAAGAACAAGTTGATTGCAATATTGTTGTGGAAAATAAAATCGACGTCGAGGAAGAATCTCTTGCATCTAAAGACAGCGCAGACCGAGAACTTGCCCAGCAACTTGTCTGTACACGCAGCGAGTCTGGATCTGATGATGAACAAGATGGTGGTTCAAGTGTTACTAGTGAAGTTAGCAATGCATTGGATAAGGATGAAACTAATTCCAATACAGACACAGACAGTCAAGAGTTTCAATGTTCAGTGTGTAAAGAAGTATTTACAGATAAAGTTATGTTCCATAGCCATTTGAAAAGTCATCTTAAAAATATAACAAGTACAGAATGTTTAATTTGTAATAAAAAATTAAGCACAAAAAAGACCTTGAGCGAACATATGAAATGTGATTTAGGTATTAAAGATTACGAATGCTCAATATGCAAAAAGAAATTTTTTCGAAATGAACGATTGAGAGTACATATAAAAATGCATGAAGGTATAAAAGATCATGAATGTTCAATTTGTAAAAAGAAGTTTACACAAAAATATGATGTAACCAGACATCTAAAATCGCATGAGGGTATTAAAGATCACGAATGTTTAGTTTGCAAAAGGAAATTTATACAAAGGATTCATTTGCAAGTGCATATGAAAATGCATGCAGGTGATAACCTCAAGTATGACAGTGATTCTTTAGAATACAAAGCAATCAAAGACAAATATATGCTAATTGAAAAATTAAATTACCACCTCGAAAAAAGAATAAATGATCTAGAACTGATAATAAAACTTAATAACAAAGATCAAAATAAAATTAGCAAAGTCACCGACAATAATAATAAGTCGTTAATTAATCAACAAAATAAGCAAATGACGACACCTACCAGCGAAACAAAAACAAACATAATAAATCAAGCGACATACCGGCAACGGGACATGACATATCATCTATCGCCAAACAGTATTATTGGAATAAATTCAAACGACTCCTCAATACGAAGTGGGAATAAGCATGCATGGTTATACATTGGAAAAGTCCACACTGATATCACCGAGGATGATATGATACACTTTTTGACTGAAAAATGTCCAGGAAGAACATTCGAAGTTAAAAAAGTATCAAACGAGCAATCCACAAATAACTCTTTCAGAATACGAGCTGATTTCGATCTTCTGAATGTACTCAATGTTGCAGATTTCTGGCCAAATGGTATAATCGTACGTAGATACAAATTTTTTCGTCAATCAAAGTCAACATCACTTAACGGTGAACAATAA
- Protein Sequence
- MYVLKNICFVCLTDTDKRLKKVLHYNTADEVFTIVKYALPELTILNPEHSVYICSSCHTTLRSYSEFKKKCLDNYSRFTGYIKILQGSNTTSDKSSSELQIRVINCEQLIKHENDIHSIIEENEDAFMSWEKQHDLKTEVDDSIDIEEEPLAYQQLLKIESVSDDIQDAGSSVLNENINALDQKTIIEDYIVVKDELDVDEVFVIKLNPPDDNEDALLPSEEQVDCNIVVENKIDVEEESLASKDSADRELAQQLVCTRSESGSDDEQDGGSSVTSEVSNALDKDETNSNTDTDSQEFQCSVCKEVFTDKVMFHSHLKSHLKNITSTECLICNKKLSTKKTLSEHMKCDLGIKDYECSICKKKFFRNERLRVHIKMHEGIKDHECSICKKKFTQKYDVTRHLKSHEGIKDHECLVCKRKFIQRIHLQVHMKMHAAPHNQNCENDDDRAIFLDDSEQNTDTEYENDKQMCLDLNECVTEKTCENDIIPSKLEREENEETNVLDIPKSTVYDIMRLYGEPSETDIPGKPKEHSRKVTPRAQRTLKIICRRGITTILNPEHSVYICSSCHTTLRSYSEFKKKCLDNYSRFTGYIKILQGSNTTSDKSSSELQIRVINCEQLIKHENDIHSIIEENEDAFMSWEKQHDLKTEVDDSIDIEEEPLAYQQLLKIESVSDDIQDAGSSVLNENINALDQKTIIEDYIVVKDELDVDEVFVIKLNPPDDNEDALLPSEEQVDCNIVVENKIDVEEESLASKDSADRELAQQLVCTRSESGSDDEQDGGSSVTSEVSNALDKDETNSNTDTDSQEFQCSVCKEVFTDKVMFHSHLKSHLKNITSTECLICNKKLSTKKTLSEHMKCDLGIKDYECSICKKKFFRNERLRVHIKMHEGIKDHECSICKKKFTQKYDVTRHLKSHEGIKDHECLVCKRKFIQRIHLQVHMKMHAGDNLKYDSDSLEYKAIKDKYMLIEKLNYHLEKRINDLELIIKLNNKDQNKISKVTDNNNKSLINQQNKQMTTPTSETKTNIINQATYRQRDMTYHLSPNSIIGINSNDSSIRSGNKHAWLYIGKVHTDITEDDMIHFLTEKCPGRTFEVKKVSNEQSTNNSFRIRADFDLLNVLNVADFWPNGIIVRRYKFFRQSKSTSLNGEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -