Basic Information

Insect: Pterostichus niger
Gene Symbol: -
Assembly: GCA_947425015.1
Location: OX380346.1:26288643-26300338[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 5.5 7.8e+02 2.4 1.1 1 18 275 292 275 292 0.92

2 8 4e-05 0.0056 18.6 1.3 1 23 521 543 521 543 0.98

3 8 0.011 1.5 10.9 2.5 2 21 551 570 551 572 0.93

4 8 3.4e-06 0.00048 21.9 2.9 1 23 578 600 578 600 0.98

5 8 0.22 32 6.8 1.9 3 23 608 628 606 628 0.97

6 8 1.6e-07 2.3e-05 26.1 1.7 1 23 634 656 634 656 0.99

7 8 1.4e-07 2e-05 26.3 1.7 1 23 662 684 662 684 0.99

8 8 1.4e-08 2e-06 29.4 0.5 1 23 690 712 690 712 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	5.5	7.8e+02	2.4	1.1	1	18	275	292	275	292	0.92
2	8	4e-05	0.0056	18.6	1.3	1	23	521	543	521	543	0.98
3	8	0.011	1.5	10.9	2.5	2	21	551	570	551	572	0.93
4	8	3.4e-06	0.00048	21.9	2.9	1	23	578	600	578	600	0.98
5	8	0.22	32	6.8	1.9	3	23	608	628	606	628	0.97
6	8	1.6e-07	2.3e-05	26.1	1.7	1	23	634	656	634	656	0.99
7	8	1.4e-07	2e-05	26.3	1.7	1	23	662	684	662	684	0.99
8	8	1.4e-08	2e-06	29.4	0.5	1	23	690	712	690	712	0.98

Sequence Information

Coding Sequence: ATGACCCAGCAAACCAGGCTTACTACGCCTATGTCAACACAAACGATAAGACAAAATTACAACCTCAACGAAAACTCAGATGAACAACCAGACCGCACTGAGGACGAATACGAATACGCGGAACAAGACAATGAAACAGAACATGACTCTTTTTTAGAACTCGAGACAGAAGTAGACGAAGACAAATACGGGGTCAAGCATAAACTTAATACACCCAGATTTAGTATTGAAGCATTTAAGAAACTAGATATCCAAATTGATTTTAAGAAAAACTCCGTTAACATCCAAGGAAAAGAAAAGGCACTACAAACCGACTTTAAAAATTGTCAACAAAATAATAATATTCAAATACGCTCAGAACATTTGAATCAGATCGAAAAATCTAAATTAACAACACTCATAAAAAATTTCGGAGACCTTTTTCCAAAACCAAATGAACAATTATCTTGCACAAATTTATGCGAACATAAAATAACCCCGAACGAAACACTATTCGGTAAAAATAATCAAATCCCTCTTATACCAATCACAGTCATTAACGAAAAAACAATACAAAAATATCAAACAGAACAAGAGGAATTATTTAAAACCATTAATAATAAAATTAAACTTGAAAAGCAAAAGCGGTACAAAGAAAATGACAACCCCCTACAAATAAAAAATACTATTTATGTGAAAGAAAACCCAAGATTAATTAAGAAATTTAAAAAGCCTTTATTTAGAAAATATAGAGTTCAACATTATGACCCGACACTCGGAAAAGTAAAAATCAGAGATCAAATAGCAGAAAAGCACACTATTTTGAATCCAAAGGATCCTGTATACATTTGTTCCTCGTGCCAAACAACACTTCGCTCTTATTCCTCGTTTAGGAAAAAGTGTTTGGACAACTATAGTCGTTTGACTAATTATATAAAAACATTGCAAGGAAGCAACACCACCTCTGACCAGAGTTCCAGCGAATTACAAATCCGAGTAATTAATTGTGAACAACTGATAAAACATGAGAATAACATTTATTCAATTATTGAAGAGAATGAAGATGCATTGATGTCATGGGAAGAACAACATGACCAGAAGATTGAGGTTGATGATTACATCGATATAAAAGAAGAATCTCGTAAATACCTGCAACTTGTGAAGATCGAATCAGTATCAGATGATGAACAAGATGGTGGTTTCAGTGTTCTTAATGAGGATATCAATGCGTTAGATCAAAAAGCTATAATAGCAAATTACACCGTCGTCAAAGACGAATTGGATGTCGATGAAGTTTTTGTTATCAAATTAAATCTTCCAGATGAAAATGAAGATGCACTGCTGCCATCAGAAGAACAAGTTGATTGCAATATTGTTGTCGAAAATAAAATCGACATCGAGGAAGAATCTCTTGCATCTAAAGACAGCGCAGACCGAGAACTTAACCAGCAACTTGTCTGTACACGCAACGAGTCTGTATCTGATGATGAACAAAATGTTGGATCAAGTGTTACTAGTGAAGTTAGCAATGCATTGGATAAGAATGAAACTAATTCCAATACAGGCACAGACAGTCAAGAGTTTCAATGTTCAGTGTGTAAAGAAGTGTTTACAGACAAATCAAAGTTTTATATTCATTTGAAAGGTCATCTTAAAACTTTATCGGATGCTGAATGTTTAATTTGTAATAAAAAATTAAGCACGAAAAGTTACTTGTGGGATCATTTGAAATGTCATTTAGGTATTAAAGATTACGAATGCTCAATATGCAAAAAGAAATATTCACAAAAATTTCTGTTGAAAAGACATCTAAAAATACATGAAAATATTAAAGATTACGGATGTTTAATTTGCAAAAAGAAATTTTTACAAAAACAATATTTGAAATTCCATATGAAAATACATACTGGTATTTACGATTATGAATGTTCAATTTGCAAAAAGAAATTTATACAAAAGAATAATTTGACAGTTCATATGAAAATGCATAAAGGTATTTACGATTATGAATGTTCAATTTGCAAAAAGAAATTTATTACAAAACAAAATTTGCAAGTCCATATGAAAATGCATGAAGGTATTAAAGATTATGAATGTCCAATTTGTAAAAAGAAATTTGCACGAAATAGTAATTTGAAAATACATATAAAAGTACATGAGGGATAG
Protein Sequence: MTQQTRLTTPMSTQTIRQNYNLNENSDEQPDRTEDEYEYAEQDNETEHDSFLELETEVDEDKYGVKHKLNTPRFSIEAFKKLDIQIDFKKNSVNIQGKEKALQTDFKNCQQNNNIQIRSEHLNQIEKSKLTTLIKNFGDLFPKPNEQLSCTNLCEHKITPNETLFGKNNQIPLIPITVINEKTIQKYQTEQEELFKTINNKIKLEKQKRYKENDNPLQIKNTIYVKENPRLIKKFKKPLFRKYRVQHYDPTLGKVKIRDQIAEKHTILNPKDPVYICSSCQTTLRSYSSFRKKCLDNYSRLTNYIKTLQGSNTTSDQSSSELQIRVINCEQLIKHENNIYSIIEENEDALMSWEEQHDQKIEVDDYIDIKEESRKYLQLVKIESVSDDEQDGGFSVLNEDINALDQKAIIANYTVVKDELDVDEVFVIKLNLPDENEDALLPSEEQVDCNIVVENKIDIEEESLASKDSADRELNQQLVCTRNESVSDDEQNVGSSVTSEVSNALDKNETNSNTGTDSQEFQCSVCKEVFTDKSKFYIHLKGHLKTLSDAECLICNKKLSTKSYLWDHLKCHLGIKDYECSICKKKYSQKFLLKRHLKIHENIKDYGCLICKKKFLQKQYLKFHMKIHTGIYDYECSICKKKFIQKNNLTVHMKMHKGIYDYECSICKKKFITKQNLQVHMKMHEGIKDYECPICKKKFARNSNLKIHIKVHEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -