Pnig049456.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380351.1:9258150-9274753[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.7 3.8e+02 3.4 2.5 1 23 123 146 123 146 0.96 2 19 0.013 1.9 10.6 0.2 3 23 151 172 149 172 0.96 3 19 0.00092 0.13 14.3 2.3 2 23 310 332 309 332 0.96 4 19 0.036 5 9.3 0.3 1 23 599 622 599 622 0.95 5 19 2.2 3.1e+02 3.6 0.3 2 23 703 725 702 725 0.86 6 19 0.2 29 6.9 3.6 2 23 735 757 734 757 0.96 7 19 0.095 13 7.9 0.3 1 23 768 791 768 791 0.93 8 19 0.016 2.3 10.3 1.6 1 23 797 822 797 822 0.97 9 19 0.015 2.2 10.4 0.5 3 23 832 853 831 853 0.94 10 19 0.0019 0.26 13.3 2.5 1 23 860 883 860 883 0.97 11 19 0.00014 0.019 16.9 0.3 1 23 889 911 889 911 0.98 12 19 2.2e-05 0.0031 19.4 0.3 2 23 918 939 917 939 0.96 13 19 3e-08 4.3e-06 28.4 4.3 1 23 944 966 944 966 0.98 14 19 0.025 3.6 9.7 5.5 1 23 972 994 972 994 0.98 15 19 0.00047 0.066 15.2 7.1 2 23 1001 1022 1000 1022 0.96 16 19 6.2e-05 0.0088 18.0 1.0 3 23 1030 1050 1029 1050 0.97 17 19 0.0011 0.16 14.0 0.7 5 23 1059 1078 1058 1078 0.94 18 19 0.0012 0.17 13.9 1.3 1 23 1086 1108 1086 1108 0.98 19 19 0.0046 0.65 12.1 1.2 2 23 1115 1137 1114 1137 0.94
Sequence Information
- Coding Sequence
- ATGGATCCCGCATCAGAAAAACAACTTATTCTCAATAAAGTACCAATTCATAACCGGCTACTAAAACTAGAACCTACCAAAAGACGTTTACGAAAAACAACCCAACATCCTGAATTTGAATACTTAAATACAGACAGCTCGCAATCCAACGATGATAATTTGACACAACTAAAAGAACCAGAAGAAAAAATCACTTTAATTGAACGAGCTATTGGATATTTCAACGCAGAAAATGATCTTGAAGCACAGAAAAGTGCTATAAACGTTTCAACAACTGAAGGGCCACCATATATATGCAAAATATGCAACAACTGGTTTTATTTGGGTGCTAAACTCAAACTACATTACTTACTGAACCATAATTTGTATCACTGTGAAGTTTGCAGTAACTTATTCAACACATTAGATGATAAAAACAATCATTTAACGAAATATCACTCACCAATTTTCTGTGAAATTTGTCAAAAGTTCTACAACGATCTACCTACTTTACTAGAACATTACAAATCGGATCATGACAGCACAACCTGTCAATTTTGTGGCATTTTACTTCAACCACAAAGCATGGCTGCCAACCATATAATCAGAAAACACTGTGTTTTCCCTAAATTTTTTGAAACTACTAAAAATATCGTTGAAGTTATTGAAAATACTAACGAATTTTTTTGTGCTTTATGTAACAAAAGTAGAGAACGAGAAATATTTTTTGGACATATGAATTCACATCATAAACTAAGTGTTGGATCGTTGATGAATCTTATGGTTAAATTAGAGGTTAAGATTAGTGTGACAGGTGCAAGAAAGCATGATGTTGAAGGTGAAAGAAATGAAGAAAAGGTTTATAAAAATAGTTGTCCAGTGTGTTTACTTCGATTCACTAAGAAAATACCTCAAGAATTTCATTTTATTTATTGTCAATCAAAAGTACAATGTAAATTTTGTGAAAAGCAGTTTTCTAACCAAACTTATTTGGACAAACATTTAACGAAACAACATATTAAGTTTCTATGTAAACAGGGATGCGAAAAGCTTGCTTACAACTCAGAACTTAATCTTTTAAAACACTACACTAAATTTCATGACAGCGTTTCTTGTAGATATTGTCATGAGTATATAATAACTGCAAATTTTGATCATCATCTTATAGCTAATCACAAATACAAAGCAACAATTATGAAAAATTTTACTGATACATTATTTGAAGTAACTCAAAAAGAAAATAAGCATATAGTTATATGCTGTTTATGTGACGAGAATATAACGTTATTAGCAGAAAAAATCAGAGATATTTTTCAACATTACAACTTGATTCACAAAGTTAATTTTGTTAAAATCTTACAAATGATTGGTCCAAAACCAATGTTAGAAGACTACGAGGATTTTTATCGCGAAATTAATGAATCAATCAAAAAAGAAACTGATGAAAATGGACAAGAAAATCCGAATAAATCAATGGATAATAGTGAAGATCTAGTATTCATTCCAGAAATAAAAATTAAAGTAGAACCTTTAGATCCAACTGAATTTACTGATGAAATTAATCCAGCCGATCAGATGACAGAAACTGATCAATTAAATCAAGTTAATGACGCTAATCAAGCTAATGATCATGTTGAAGATGATTTACAAGAAGAAATGTCTGGCTCATCATCTGAGGAAGAACGTCCAATTATAAAACCACGTAAATTTGAAGATTTCTCACATTTACAATCCGAAATAGAAAGTGATTTTGATATAGAAGAATCTGAAATATTAATTAACAGTGACTCAGAACTAGAAGATGAAAGTAAAGAATTCTCCTGTGAGTTTTGTTTAGAAAAATTTCCGAAATTAATTGAGTTAATCAAGCATATCCAAGATAAACATAAACTTCGAACGAAATATCGAAAATTTGATTGTAAATATTGTTCCGAAATAATCATTAGTTACAAAACACATGCGAATCATCTACTTAGTCACCATGGCAACGCTGAATTTGATTTTTCGAAAGAAATGTTTACTTGTGATTGTCATAATTATCAAGTGGTGCATTCGTTGGCAAGAAGTCATGTTTTGAAAGTTCACAGTGATGACTTAACCAAGTATAATGTCGAGGAAATAGGGTTAAAGTGTAGATTTTGTGAGAAAAGATTTTGGGAGAGAAATGAATTGAATGAACATGAAATCGAAGGGCATTTTCAGGATAATCAACTGGATTTTCAGAAGTGTTTTACTTGTTTTGCTGTATTTAGTAGCCAGAAATGTCTATCAACACACTCGCAAACAGCACACGCCGAGCTCCCTATCTACTCCAGTCTCATCTACAAATGTTTAAACTGTACCACAGTTTATCCTAACCTACCACTTCTTCGAGATCACTTCAGTAATGTACACCCGACATCAAAAATATTCCGTTGTCCAGTACCTCAATGTTTTAAAGTGTGTAAACGAGAGAAATATATGCTGGCACATTTGAAGCGACCTCACGAGAAGGGAAAGGAACAAAATGCTGCTTGTGATGTTTGTGGAAAGAGGTTTAAGAGTTTTCGAGCAGCAACAATTCATAAACTGATGAAGCATCAACGAGATCGAGCTGGATTTCAATGTAGAATTTGTAATGAAAGATTTTCCACAAGTGAACAAAGAAAGCTTCACTACACCACATCTCATCCAGGACAACTGGCTTACAATTGTTTAGAATGTGGAAAAGGATTCATTAGTAAATCCGGATTATATGGACACAGAAAAATACATCAACAAAATAGCAACTTGGTCTGTCCGTACTGCAGCAAGGAATTCTCAAGACGGGATTCATACAATGAACATCTTTTAATTCATATTGGGCCACGACATCAGTGTCCCCACTGCCCTAAATCTTTCACACAGCGATCAAATTTAACGAGACACGTTCGTATTCACACTGGGGCAAAGCCCTACCAATGTTGTTATTGTGAGAAGCGGTTCAGTGATCGTGGAGCCTGTAGATCACATGAACGAGTTCATACTAAAGAGGAACATTGTCAATGTTCTTATTGTGGAAAAAAATTCACGAAAAAGCAAAAATTAAAATACCATATTAAGTTCCACACTGGCGAAGGTCTAGTGGATTGCGAAACATGCGGAAAACAATTTTCCAACACTTATTCGTTAAATGAACATCGAAAAATTCATAACCAACAAACTTTAGTAATGTGTAATTGTGGACGAGGCTTCAGCAGCGAGAAATATCTACAACGTCACATGCAAAACGTGCATAATCAAACACAAGCCACTAAATACATATGTCCAGTGTGTTTTAAACCGCTGTTTCATAAGTCGTCTTATAATGATCATATTATGACCCATTCTTCAGTCAAACATGTTCGGTGTCTTCTTTGCAACAAAGAGTATAATACGAAGAAAACTGTCAAACGTCATATACAAGAACAACACAATCTTCGAAAATCTGAAGAAATCTACAAACATATATATCAGCTGACTCCTTTAGAAGCTGGTTTGAATCTTCCTACAGCTTCCGAAATGGCTGTTAACGTTACAGAACTGCTAAATGACAAGAATATCTTAAATTTAGATGTTGCTAAATTTCAACAATTAGTATCTACTCAAAGCTCTGCTGCGCCGATAACAAAGAAGACTAGATCATCCAGTGACACTGGCGCGAAAATTCAAATTAAACAAGAACCCATTTCAGATGATTCCGATGAAAATAATGACTTTTCTGAACGAGAAAATGATGAAAATTCTGAAGATGATGTTCCTTTAGATAGTAGGGCTAAAAGAAAAGTGAAAAAACTGAGGAAAACTAAAAAATAA
- Protein Sequence
- MDPASEKQLILNKVPIHNRLLKLEPTKRRLRKTTQHPEFEYLNTDSSQSNDDNLTQLKEPEEKITLIERAIGYFNAENDLEAQKSAINVSTTEGPPYICKICNNWFYLGAKLKLHYLLNHNLYHCEVCSNLFNTLDDKNNHLTKYHSPIFCEICQKFYNDLPTLLEHYKSDHDSTTCQFCGILLQPQSMAANHIIRKHCVFPKFFETTKNIVEVIENTNEFFCALCNKSREREIFFGHMNSHHKLSVGSLMNLMVKLEVKISVTGARKHDVEGERNEEKVYKNSCPVCLLRFTKKIPQEFHFIYCQSKVQCKFCEKQFSNQTYLDKHLTKQHIKFLCKQGCEKLAYNSELNLLKHYTKFHDSVSCRYCHEYIITANFDHHLIANHKYKATIMKNFTDTLFEVTQKENKHIVICCLCDENITLLAEKIRDIFQHYNLIHKVNFVKILQMIGPKPMLEDYEDFYREINESIKKETDENGQENPNKSMDNSEDLVFIPEIKIKVEPLDPTEFTDEINPADQMTETDQLNQVNDANQANDHVEDDLQEEMSGSSSEEERPIIKPRKFEDFSHLQSEIESDFDIEESEILINSDSELEDESKEFSCEFCLEKFPKLIELIKHIQDKHKLRTKYRKFDCKYCSEIIISYKTHANHLLSHHGNAEFDFSKEMFTCDCHNYQVVHSLARSHVLKVHSDDLTKYNVEEIGLKCRFCEKRFWERNELNEHEIEGHFQDNQLDFQKCFTCFAVFSSQKCLSTHSQTAHAELPIYSSLIYKCLNCTTVYPNLPLLRDHFSNVHPTSKIFRCPVPQCFKVCKREKYMLAHLKRPHEKGKEQNAACDVCGKRFKSFRAATIHKLMKHQRDRAGFQCRICNERFSTSEQRKLHYTTSHPGQLAYNCLECGKGFISKSGLYGHRKIHQQNSNLVCPYCSKEFSRRDSYNEHLLIHIGPRHQCPHCPKSFTQRSNLTRHVRIHTGAKPYQCCYCEKRFSDRGACRSHERVHTKEEHCQCSYCGKKFTKKQKLKYHIKFHTGEGLVDCETCGKQFSNTYSLNEHRKIHNQQTLVMCNCGRGFSSEKYLQRHMQNVHNQTQATKYICPVCFKPLFHKSSYNDHIMTHSSVKHVRCLLCNKEYNTKKTVKRHIQEQHNLRKSEEIYKHIYQLTPLEAGLNLPTASEMAVNVTELLNDKNILNLDVAKFQQLVSTQSSAAPITKKTRSSSDTGAKIQIKQEPISDDSDENNDFSERENDENSEDDVPLDSRAKRKVKKLRKTKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -