Pnig048079.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380336.1:38590270-38593929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.042 6 9.0 0.2 1 23 432 455 432 455 0.94 2 15 0.0037 0.53 12.4 2.5 1 21 465 485 465 486 0.95 3 15 0.85 1.2e+02 4.9 1.7 2 23 495 516 494 516 0.89 4 15 0.24 34 6.7 0.9 2 23 524 546 523 546 0.91 5 15 1.4e-05 0.002 20.0 0.3 1 23 552 574 552 574 0.98 6 15 0.022 3.1 9.9 2.8 1 23 580 602 580 602 0.94 7 15 1.3e-05 0.0018 20.1 2.7 1 23 608 630 608 630 0.99 8 15 2.4 3.4e+02 3.5 0.0 2 12 641 651 640 656 0.89 9 15 0.0033 0.46 12.5 2.1 1 23 679 701 679 701 0.98 10 15 0.091 13 8.0 3.5 1 23 747 770 747 770 0.93 11 15 0.00047 0.067 15.2 1.0 1 23 777 800 777 800 0.98 12 15 0.00035 0.05 15.6 5.1 1 23 805 828 805 828 0.98 13 15 3.6e-06 0.00051 21.8 0.5 2 23 836 857 835 857 0.98 14 15 0.00068 0.096 14.7 0.5 1 23 863 885 863 885 0.95 15 15 7.3e-06 0.001 20.9 2.1 1 23 912 934 912 934 0.98
Sequence Information
- Coding Sequence
- ATGGCACAAAATATGAAATTATCAATCGTGGGCCAAGGCAATGAAAATGTCATAGTGGAAGTAAATGATCATGAAACATTTGAAGAATTTCAACAAAAAGTTTTCAGGGACCACAATTTGTGTATAACAATTGAAGATTTTCAACTGTTTTTTGAAAATTTGTTACCCGGTGACAATTTGTTCAATTGTTTACGTGAGAATTTAAATATTGGTAATGAAATAAATAGTATAGAGAATGCACCAATTTATGAAATAAATTTAGTTAGAGATATTAGTGGAAGTATTAAAGATGAGCACAATAGTTCTTTTACAATTAATAATGCGATTGAAACTGCAGCAGCTGAACATTTTGATGCTTACAAGGATGTACAAAACTTAGGTAATTCTCTCATGGTCTTAAATCAGGAACAAGCTGCAGAATATTCCAATATTTTAAGTGATAGTATATTCGAATCACCTGATTTTGAACAAAATAGTAAAAAAATTGAAGATTCTAATCAGGGAATAACTTTGTACAGTGAAAATAATGAATTAATTCCTAATAATTTTGAACTTGTTTCAAAGACTCATTCAGAAGAAAATACAGATATAAAAAATAATGTAAAAGAAAATAGTAAATTTACAACAACAGACGAACAGACAGTTGATATAAGTGAAAGTTCTATAAAAAAACCTGAACAAAATCATGAAAATTACAGTTATATGGACATTGAATCAAAATTGGCAGAAATGCACGAATATAATGAAGAAATTATGACAGATTTATGCAGATTATGTGCAAAAAACATCGCAGAAGATATTAAAATACAAATATATGACGATACTGATCATTTAGAAAACAAAATTAATAATTCTTTACCAATTAAAATCCAGAAAGAAGATGGTCTTCCACAACAAATTTGTAGTTCTTGTACAGACAAGTTAAAAAATTGTTATGAATTTGTACAAATTGTTACAGAAGCAGACAAGCAGTTACGAATTAAATTTCCGAATATTTTAAACAATAGTGACAATTTTAAAAATACATCTGTTTCTGAGTTTATGACTGAATTTCTTGGTTCATCATCCCCTGTAAGTAAAACAAGCGAAGATCACCCAAAAAATGTTAAGTTTGAACCAGAAGAGTCCATCGACATCGTCGACAATGAATTTGAGACGGAATATCTAGAAACAGATGAAATCGAACAAAAAACAGACAGTGAAAAACCGAACTGCCGATTATGTGATTTAATAATAGACAATTTAGATGAAGCAGTAACTCACGGAATTACTGTTCATCATATAAATGAGCTGTTTGCTTGTGTATTTTGTGAATTAGGTTTCAAAAAATCCGTTTTATTAGAGCAACATGTTAAACAAGAACATCGGAATTTGTTTACAGAATCGCGAAAATACCAATGTACAGTGTGTTCAAAAAAATATGGTTCTCAATTTTTATTACAAAAACATACCTGTGTGAAATCAGCTGCAAATAAAACACTCCACTGTGAAGTATGTAATCAAGCCTTCCCTACAAAAGTTAGGTTAAATTTTCATAGACAATTTCATTTAAAAGATGCACGACCGTTACACTGTGCCATTTGTAGTATGTCATTTGACAGCGAAACTGAATTTTTTGATCACGTTAATTTTATGCATGATTCGAAACAAAGTTTTCcatgtgatatttgcgacaaaactttttctattcgagctgctttgaataatcacaagaaaatgcacaccggtattcgaaatcataaatgtgaAACATGTAATAAAACATTTTTGGATAAACAAACTTTAAAAGAACACGAAGTGAGTCATATGGAAACTAAACCTTATCAATGTCACATTTGTGGTAAAAATTTGAATAGGTTAAGTCGATTGCGTCGCCATCTATTAACTCATGAATCAAATCCTGTAGTGAATGATGTTCTTGTTTGTGATATTTGCAAAGAAGCATTTTCCGATGATGGTAGCGCAGAATTCCACAAAACTTACAAGCATGATAATAAAAAGAACTGTATTAAAATTATAAACACCGATAAAGTATTTCGCTGCGAATTTTGTGAAAAGTGTTACTATACTCCTTTAGCCTTAAACGAACATAAAAATATTCATACAGGTCCTACTCCATTTACATGTCATATTTGTAAAGCCCAATTTAGTTCGTATCCAAGATGTACAACACATAAAACAACCCATGGACTGTATAAAGATGGTGCGGAAAAAGATAATTTTCCAGTTGTTAAACATTTTCTTTGCGAACATTGTGGAAAATCATATCTTCATTGGACTTATCTCGGTCTACATCGCCGCTTAAAACATTCAGAAAATGTACAAGTTTATAAATGTACCGATTGTAAGTTACAATTTCCTAATAGTTGGGGACTTGCGTACCATCGAAAAACAAAACATTTCCAGGAAAATTACAAATGTAAAGATTGTGGAAAAGTTCTTACCAATGAACATTGTTTGAAGCTACATTATTTAACAAGACATTCAAGCCCACAAAAAGATAATCAATGCGTAATATGTGGAAAAATGTTCCAATATCAAACTTCACTGGAAGCACACATGAAAACTCACAGAGGATTGAAAGAATATAAATGTGCGTTGTGCCCCAAAAGTTTTATTCATCTTGCAGGACTCACGAGTCATTTCATTGAACACAAAGCTAGAAAATTCGTTTTTCCCAACGAAGGGGGAGAAACTTCAAATAGATATAGATTGAATCATACAGATCGTCCTTTCACGTGTGACGTTTGTGGTTTATCATTTCGTCGTCAGTTCACTTTGCGAAATCATAGACTTAAACATTCAAAACCCGCCGATTCCGGAAGTTTCGTTTTAATGGTCGATATGAAAGAAGAGGAGAGTCCAGAAGAAGATAAAATACTTCCTGAACAACCTGTACAAATTGTAGAACCTGTTCTAGAACACAAACCACCAGAACCGGAAATGAATTTTGTTCAACTTGCTCCAGGACAGGAAGTGGCGCAAAATTATATCGATATGGGGAATGGAAGTTTTTTACAAGTGCAGGGAACTACTTTTAATATCGGAGGAAAGGAATATATGCTCGTTGATGAAAATGGGAAAGCTGTCGGAAGAAATCCGGAGTTTGAAATGATTGTTGATGAGACACTAAGAGGGGAAGAACATGTGAACCAGTTAAATAATGCAGCTACAGAACAACAATTTGATAATAATACTGTTATGTATGTAGAGTCTGATAACAATTCTTATGTAATAAATCAGAATGAAATGCCGTCTGATTACATATTAACTGCTGATAATAAAACATTGACAAAAACTGTGACTACAGGAGGAACTACTTACGTCATTGGCGGAAATGAATTTTTACTCCAATCTGATGATCAAACTTTTTAA
- Protein Sequence
- MAQNMKLSIVGQGNENVIVEVNDHETFEEFQQKVFRDHNLCITIEDFQLFFENLLPGDNLFNCLRENLNIGNEINSIENAPIYEINLVRDISGSIKDEHNSSFTINNAIETAAAEHFDAYKDVQNLGNSLMVLNQEQAAEYSNILSDSIFESPDFEQNSKKIEDSNQGITLYSENNELIPNNFELVSKTHSEENTDIKNNVKENSKFTTTDEQTVDISESSIKKPEQNHENYSYMDIESKLAEMHEYNEEIMTDLCRLCAKNIAEDIKIQIYDDTDHLENKINNSLPIKIQKEDGLPQQICSSCTDKLKNCYEFVQIVTEADKQLRIKFPNILNNSDNFKNTSVSEFMTEFLGSSSPVSKTSEDHPKNVKFEPEESIDIVDNEFETEYLETDEIEQKTDSEKPNCRLCDLIIDNLDEAVTHGITVHHINELFACVFCELGFKKSVLLEQHVKQEHRNLFTESRKYQCTVCSKKYGSQFLLQKHTCVKSAANKTLHCEVCNQAFPTKVRLNFHRQFHLKDARPLHCAICSMSFDSETEFFDHVNFMHDSKQSFPCDICDKTFSIRAALNNHKKMHTGIRNHKCETCNKTFLDKQTLKEHEVSHMETKPYQCHICGKNLNRLSRLRRHLLTHESNPVVNDVLVCDICKEAFSDDGSAEFHKTYKHDNKKNCIKIINTDKVFRCEFCEKCYYTPLALNEHKNIHTGPTPFTCHICKAQFSSYPRCTTHKTTHGLYKDGAEKDNFPVVKHFLCEHCGKSYLHWTYLGLHRRLKHSENVQVYKCTDCKLQFPNSWGLAYHRKTKHFQENYKCKDCGKVLTNEHCLKLHYLTRHSSPQKDNQCVICGKMFQYQTSLEAHMKTHRGLKEYKCALCPKSFIHLAGLTSHFIEHKARKFVFPNEGGETSNRYRLNHTDRPFTCDVCGLSFRRQFTLRNHRLKHSKPADSGSFVLMVDMKEEESPEEDKILPEQPVQIVEPVLEHKPPEPEMNFVQLAPGQEVAQNYIDMGNGSFLQVQGTTFNIGGKEYMLVDENGKAVGRNPEFEMIVDETLRGEEHVNQLNNAATEQQFDNNTVMYVESDNNSYVINQNEMPSDYILTADNKTLTKTVTTGGTTYVIGGNEFLLQSDDQTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -