Pnig044466.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380335.1:31935810-31943951[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0033 0.47 12.5 1.5 2 23 202 224 201 224 0.97 2 20 0.39 55 6.0 1.0 2 21 309 328 308 329 0.90 3 20 1.9 2.7e+02 3.9 2.6 1 20 336 355 336 357 0.93 4 20 0.0014 0.2 13.7 1.3 1 23 380 403 380 403 0.97 5 20 0.22 31 6.8 0.4 3 21 412 430 411 431 0.95 6 20 2.3 3.3e+02 3.6 1.1 2 23 438 458 437 458 0.89 7 20 0.00048 0.067 15.2 1.3 1 23 497 519 497 519 0.98 8 20 5e-05 0.007 18.3 2.3 1 23 525 547 525 547 0.98 9 20 0.00065 0.092 14.7 3.7 1 23 604 626 604 626 0.98 10 20 0.77 1.1e+02 5.1 0.4 3 20 642 659 640 661 0.85 11 20 0.0017 0.24 13.4 0.8 1 23 690 712 690 712 0.95 12 20 0.21 29 6.9 0.3 2 23 723 744 722 744 0.97 13 20 1.4e-05 0.0019 20.0 1.5 2 23 761 782 760 782 0.97 14 20 0.00027 0.039 15.9 0.6 1 23 802 824 802 824 0.99 15 20 0.02 2.8 10.1 3.3 1 23 832 855 832 855 0.96 16 20 0.00016 0.023 16.6 2.6 1 23 871 893 871 893 0.98 17 20 0.0013 0.18 13.8 0.1 1 21 902 922 902 923 0.96 18 20 0.002 0.28 13.2 4.0 1 23 959 981 959 981 0.98 19 20 0.032 4.5 9.4 4.0 1 23 985 1008 985 1008 0.91 20 20 4.1e-05 0.0057 18.5 0.7 1 23 1043 1066 1043 1066 0.93
Sequence Information
- Coding Sequence
- ATGGATATAGTGGCAGTGAGTACTAATAGTTGTAATTTAATGTGTCGACTGTGTTTGTCTACCGACGACTATTTGCTATCCGTTTTCGATGAAAGTAATGCCTTTTTACCTCAAAGAATTGCAGCTTGTGTAAATGTTGAAATACATAAAAATGATAAAATGCCTACAACGGTATGTAAATCATGTTTTACTAAAGTTGAGGACTGGTTCAGTTTTAAAAAATGTTGTGATGATTCTCAATCAAAATTACGACAATGGGCCAGTATTAATAGCATAATTTGTAACAAGACTATGAATATGACCATTCAAGTTAAAGAAGATGTTCCACCAAATTCAGAAGATATACAAATAATAGAAAATGAGATAAGTATTTTTAAAGAAGAACCTATAGATGAGATTTATTTACCATCTGATACAGAAGAACCTGACGTTGATCCTTTTATGCTTCAACCTTGTGATGCTCAAAATTCTTCAACATATGAATCAAGTGACTCATTACTAGTGCCTACTTATGAGTGTCCTGCAACAATACACGGGATGAACGCACCTCCAATGAATACTGAAAACAGAGGTATACAGATAAAAATATCCTCTTTAACAAGCGAATGTAGCGTATGTTACAAACTATTTAGTAGTCCACATAACCGTATACGACATGAACGTACTGTGCATAACATTGACAGTATACATCCATATATTGAAACATCAACTGATTTTGAGTCAGATATTACAAACATGCAGTCAATGAATTCTGAAGATTCTAATATGAATAATAATGTAGATGAATCTAGTGGTGTTACTCTTGAACAATTTGCTGCTAGCTTACAATTAGTACAAAGCACACCGAATGTTAATTCTAGACCAATTTCTGAAAGACATTTTATTGAATATAATAAAATGTTAAGTCAAATGGTGGCTAATTTATGTTGTTATTTTTGTGGCATTCGTTATACATCCTACAAAAGTTTAATAGGTCATTTGTCAAAAGTATTGAAAATTGAAAAATTTACTTGCTTTTTCTGTTGTATCGCATTTCCAAATCGTTCTCAGTATATGAAACACGTGAGTAAAAAGTTTTGTAAACAACGAGCACGTTTTATAAGGGATATAAATTGTCCATTTAAAGCTTATCAGCATTACAAATGCACAATTTGCGATGAGCTGTATGTGCATAAAATGCTTTTAACCAGTCATTTATTAAGTACTCATTTGGAGTCAAATCATCCATCTTTATGTGATCGATGTAATCAATCGTTCCAAGATTATAACGATTATAAGGAGCATCTACAAAATTCTTGTTTTTATAAAATTTATTGCAGTATTTGTAAACTATCATACAGTCCTGAAGAATTTACCGAACATTGTAAAATTCACGAGGAAAATAATTTAGAATTTAATTTTGATGATTATATTAACAAAAAATATGATTGTAGAACCAAAATAGCTAATCCTAAACCATTTATAGAAAATATTACGAATGTTAATAAGTATTCTTGTAGTAGATGTGGTAAACAGTTTCCTACTCTTGATATGTGGTGTGAACATCAACAAATTCATTCTGATAATGATATTCATCGTTGTAATGAATGTAACAGAGTTTTCGTAACAGAATTTGAATTAGAGCAACATAAAAATACCCATGCTAATAATAATATTAAGTTGAAATTATACCGTTGTTCAGATACAAATTCATATAAAGCAGTTTCCGATTTTACATCTTCAAATTCATCGCAGTTAGAACAAAACAGTGATCATGTGTACGAACCGCAAGAACAACAAAAAATTGCTGCAACAGAAGAAAATAAAAAATTTAGATGCACGGTATGTAAAAAATATTATCCAAGCCAAAAAAGTCTTCGTTCGCACAAAAGACAGCATTTGAATATTGATTATAGATTATATACAAAAAGACGAAAATGGTTTTGTTCAAAATGTAACAGGAGTTTCGGAAGTACATTAAAACTTGGAGCTCACAAAAAAGAGTGTTTGCTTAATAAAGAAAATTCTACAGCTACAACTATAGTAAATATCAAAAAAGAGGATTCTGAATTGAATGGTGCGGGTGCCCATATCTGTCAAGTATGTAATAAATCTTTTCCGACAGAAAGAGGCCTTATATTACATTCTAAATTACATACTTCCAGAGAAAATGATTCAGAAAAAATGCAATGCCAGGTTTGTAACCAAGAGTTTTTAAACATCGAAACACTACTTGATCACTTGAAATCACATTCTACAAAAAGTTTAAATACTATATTGCAAACTGAAAAACCTACGATAGAATGCAAAATATGTAACAAAATGTGTGTGAATAATACAGGTTTGGCAAGACACATGAAAACACATTATTTGAATCAAACAAGTCCACAAATGAGAATCAAAACTGAACCTGAAACAAAATCATTCAAATGCAACTTTTGCAGTACGGAATTTGAAAGTCGTCCTGCATTAAATTCTCATATTAAAATACATTTAAACGGGGCAAATATTGCATATAACTGTACCTTTTGTTCCAAAGTCTGTTCAAATGGATATCAACTAAGTGCTCATGTCAAATATAAGCACTCAGATGAATCTAGAAACATTAAAATAAAACAGGAATTTCTGAACCATCGTTGCCGTGTCTGCAAAAAGAACTTTGTAAGCGAGGCTCTTCTGCAGACACATCTTAAGACACACGCAAAAGTAAAGGTGAACAAAAAATTCAAATGTGACTCTTGTTTAAAAACTTTATCTTCCGCTTCAGCCCTTAATCGTCATATCAAGGGTACTTGTTTACATTGTGCAAAGTGCAACAAAAATTTTTTAACGGTACAAGCACACACATCTCATAAAGGTTGGCATATGAGACAACATAGCACCAGCACCTCACTATTTAATTGTAACCACTGTAACGCTGAATTTAATTTTCAAAAAGATTACGTAAAACATTTAAAAACGCACAAAAAAACATACAAATGTAATTACTGTTCAAAAGCTTTCCACTACATGAAATCTTTATTAACTCATTCGAATTTCGCTCACGGATCCGATGGTTTAAAGACAAAAACTTCAGTGAAAAATCCGGTAAGTTTTAAAATTAAACGAGAGGTTAAAACCGAGGTAAAACAAGAACGACCAGCTATGTATAGGTGTACTGAGTGTAATACGACCTTCGTAAACTCTAAACAATTGAGGCTTCATGTTTTGGCTTCTCACATAACAGAGGGTACTTTACTACTTCCAGCAGTCGTTCTCTCGGTCGTGCACCCTCCGCCCTCGCCCGCCCTCCCCAGCGACAGTCCGCAATCGCAGATCGCATTCACAGGTACTCAGTTAGCGGTATACCACAGCACAGGTGTACGTATCGCGTGTCGAGTTTGA
- Protein Sequence
- MDIVAVSTNSCNLMCRLCLSTDDYLLSVFDESNAFLPQRIAACVNVEIHKNDKMPTTVCKSCFTKVEDWFSFKKCCDDSQSKLRQWASINSIICNKTMNMTIQVKEDVPPNSEDIQIIENEISIFKEEPIDEIYLPSDTEEPDVDPFMLQPCDAQNSSTYESSDSLLVPTYECPATIHGMNAPPMNTENRGIQIKISSLTSECSVCYKLFSSPHNRIRHERTVHNIDSIHPYIETSTDFESDITNMQSMNSEDSNMNNNVDESSGVTLEQFAASLQLVQSTPNVNSRPISERHFIEYNKMLSQMVANLCCYFCGIRYTSYKSLIGHLSKVLKIEKFTCFFCCIAFPNRSQYMKHVSKKFCKQRARFIRDINCPFKAYQHYKCTICDELYVHKMLLTSHLLSTHLESNHPSLCDRCNQSFQDYNDYKEHLQNSCFYKIYCSICKLSYSPEEFTEHCKIHEENNLEFNFDDYINKKYDCRTKIANPKPFIENITNVNKYSCSRCGKQFPTLDMWCEHQQIHSDNDIHRCNECNRVFVTEFELEQHKNTHANNNIKLKLYRCSDTNSYKAVSDFTSSNSSQLEQNSDHVYEPQEQQKIAATEENKKFRCTVCKKYYPSQKSLRSHKRQHLNIDYRLYTKRRKWFCSKCNRSFGSTLKLGAHKKECLLNKENSTATTIVNIKKEDSELNGAGAHICQVCNKSFPTERGLILHSKLHTSRENDSEKMQCQVCNQEFLNIETLLDHLKSHSTKSLNTILQTEKPTIECKICNKMCVNNTGLARHMKTHYLNQTSPQMRIKTEPETKSFKCNFCSTEFESRPALNSHIKIHLNGANIAYNCTFCSKVCSNGYQLSAHVKYKHSDESRNIKIKQEFLNHRCRVCKKNFVSEALLQTHLKTHAKVKVNKKFKCDSCLKTLSSASALNRHIKGTCLHCAKCNKNFLTVQAHTSHKGWHMRQHSTSTSLFNCNHCNAEFNFQKDYVKHLKTHKKTYKCNYCSKAFHYMKSLLTHSNFAHGSDGLKTKTSVKNPVSFKIKREVKTEVKQERPAMYRCTECNTTFVNSKQLRLHVLASHITEGTLLLPAVVLSVVHPPPSPALPSDSPQSQIAFTGTQLAVYHSTGVRIACRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -