Pnig009547.2
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380334.1:22753743-22757015[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.1 5.7e+02 2.8 0.7 1 23 728 751 728 751 0.83 2 11 0.0047 0.66 12.1 0.1 1 23 785 807 785 807 0.96 3 11 0.00052 0.073 15.1 0.5 1 23 813 835 813 835 0.96 4 11 0.00013 0.018 17.0 1.2 1 23 841 863 841 864 0.94 5 11 0.00015 0.022 16.7 0.2 1 23 872 894 872 894 0.98 6 11 0.53 75 5.6 2.8 3 23 902 923 901 923 0.93 7 11 0.00023 0.032 16.2 4.3 2 23 930 951 929 951 0.97 8 11 0.0056 0.8 11.8 4.0 1 23 956 978 956 978 0.97 9 11 1.8e-06 0.00025 22.8 3.8 1 23 984 1006 984 1006 0.97 10 11 4.7e-06 0.00067 21.5 0.4 1 23 1012 1034 1012 1034 0.96 11 11 6.4e-05 0.0091 17.9 1.5 1 23 1040 1063 1040 1063 0.98
Sequence Information
- Coding Sequence
- ATGTTTAACAAGTGGACAAACGAAATCTCGCCTTTGGATGGTTTCCCACCCTGGGTCTGTCTTTCATGCCGGACGCAAGTCAACCGCACATTCAACCTATTTAAAAAATGGATCAAATCTCACGAGACCCTTCAAAAATACATTCGTAAATATAAAGTTACAAATCAAGTTCCTAATAATACCGTAATTAATGTACAGTTAATTGGTATTAATTTTAAGCTAAATAATATAGAAAAATCTATAAATACAGATTATAAAACTGTAATTGAAAATGAAGACAAATGTGAAGATTTAAATCAATTAGACCACGAAGATTATAAAGAAATTGATAGTACAGATAATTTAGATTCATTTAAGAATATAGATAATGAAATTAATAATAAAAATAATAAATTATTTAAAGAGGAGGCCAGTAAAAATGATATAGATAACAATACAATAGTTTCTGAGGAAACAGAATCATTGATAGAATATGATGAACAACTAGATGACAAAAATTATCTATTTGATGTTTCTGAAACTCCATTAAAGAGAAAAACTGAAGATATTACTTCAGGTAATATTAAAGTACATTACGATGTACCTAAAGATAATATTATTCCTATTATTGAAACAGATAACAAAGTTATAGAAGAGATACTTAAAATAGTAAAACTAACAGATAATATTGATCAGAAGCAACAGATTCCAAATAAAGAAAATACTTCTGCATCTTGTTCTGATGAGCCAGTCGGTATTGATCAATTAATAGAAATTTCTACGGATGGACAGCATGTTATTAGCACTAAATCATCTGAAAATATAATTAATATTGTCAATCCTATTACACATATCTTAAAACAAAATGAAGAACAAAATATTGTAGCAGTTCAAGAGTTTAGTAATAATAATACTGAAATTTTATTAAATTCAAAAAGTTCTTCCATAGCGAAAAATAATTTAAAATCTGAAGAAAATTTGAACAACATCTATTTAAATTCTTTAGTTCAACCCACGACTCAACATAATATTTTAGACAAACCCATAATAAATGCTAAAATTACAGAAAGTAATGAAGATTTACCACTTTCAATACCAGTGTCTAAAGAACACACTTCGGAAGTTCTGATAAACAATTTAGGTTATATCTCGGAAACCGGTAATCAAATTTGTACCACAAGTTTTTCAGAAACATCGAACAATTTACATTATAAACTTTACTCTGCTAATTACTACAATAATAATAGTAATTTAAATAACAACAATTTTCAACAGAATTATATAGATAATAATTTCCAATATGCAAATGATAACTATTCCATAGAAATTGATGAAGTAAAGAAAATATCTGGATATCTACAAGAATCTTATCATGGAAGTCCTTCAAATGTTTATTGCAATTTAGATGACAAAATGTACTATAATAATTGTGATATGTCAGTGTCTAATATTTTGGATAATACAACCAATAATTCTTCCGTATGCTCTCCTAATTCTGACTTAAATAATGAAGTATTAAGTTTTAGAAATGTAGTTGAAAATAAATATATGAGTACATTTCAAACTTATTGTACTTATTCTAATGAAGAATTGAACTATAAATCATCTGATGTAGAAACATTATCAGTAAATAATTTTAATCAAGATGTATTGACAAAAGAAAATTTTAAACTATTAGAAAATGTAGAAAAGAATTTGGAAACTGTTGCCAACCTTGAATCATTAATAATTAAAAATGTTACAATGCAAAATCAAGTTCCACATAACTATGCAACTTGTTATGGTAATCAGAATAATACTACAAATGAACTGCGGGAAACTAATATACCATATACCGGAAATTTCGCATTGGGTTGTAACATTTATAACAGAGAATATACACCGCCCGTATCTGTTAATAATTCTATTTTTACTAGCCAATATAATAACATGCATTATAATGAAATCCGAGAAGACTATAGTCCAACATTGAAAAAAGATTGCTTTACTTTCTCTGAAGATTCTAATGGTAACGAAATACCATGCAAGAAAACAAAAATCCCCAGAAAACGCAACAAAACTGCTAACAATAAAGAAAATAAATTCTTTCAAGTTTTCCAAGATATGGAGATTGCTTCCAGACATTGTAATACCCCAATAGAATTCACTGTATCTCTTGAAGACATCCAGATAACATATTTAATAGAAAGAAATAAATCTTTATACTGTTGCACAACTTGTAATGTAACCTACGAAAATATTGCTCAGATATTAGATCATGGTACGTCATTGCATAGTTCTTCCCATGATTTTATGGAAAATGAATATCTTTCTATAAATGTTGAAAAACCAGATAAATCAGTGAAGCTTATAGTTAACCACGAAAAGAAGAAATTTATTTGCAAAAAATGTGATAAAAATTTTGGTGAAGTTGCTGCTTTGTATCGTCATGTTGCAGTTCATGTCAGTAACCAAAGATATTTCTGCGAAGAATGTGGTAAATCTTTCCCAGTGTATCGATATTTGTCTTTACATAAATTAATTCATAGTAGAATAAGAGTCTACGCATGTAAACTTTGCCCGAAAACTTTTAGAGCTAAAGATACTTTACGAACACATGAAATAGTTCATCATGAAGCAAACCAAAACAAACCTTTTATTTGTGAGATATGTGGAAAAGGTTTCGTAATTGACCAATATTTAAAAATTCACATGAAAAGACACAACAAAGAAACTGGAAGAATTTGTCATATTTGCGGGAAAATATTAAAAAATGAAGAACTTTGTTACAAACATATAAAAGAAAAGCACTTGGTTGTCAACTTGAAAGAATGCGAAATTTGCCATAAAACTTTTCACGCTAACCGAAACCTAAAGGCTCATATGAAACTCCACGGCACACGAGATTTCAAGTGTGACCAATGTGAGAAAGAGTTCTTCTTCAAACGAGATTTAGTAAACCATCAACATCTTCACAGTGGATTTAGGCCTCATATTTGCCACTATTGTGGTAAGGACTTCAGAAGTCTAGGGGCTTTATACAAACATATGAGGACACATACGAAGATAAAACCGCACATATGTGGTATTTGTCAGAAAGCGTTTAGCCAACTAAGTAGTCTGCAAGCTCATGAAAGGGTTCATTCTGGGTACAAACCCTATAAATGTCAGAAATGTGGTAAAGGTTATGTGCAAAGTAATGTTTTTCAGCAACATATGAAGAAAGTCCATCCTGGAGAAATAATTTGA
- Protein Sequence
- MFNKWTNEISPLDGFPPWVCLSCRTQVNRTFNLFKKWIKSHETLQKYIRKYKVTNQVPNNTVINVQLIGINFKLNNIEKSINTDYKTVIENEDKCEDLNQLDHEDYKEIDSTDNLDSFKNIDNEINNKNNKLFKEEASKNDIDNNTIVSEETESLIEYDEQLDDKNYLFDVSETPLKRKTEDITSGNIKVHYDVPKDNIIPIIETDNKVIEEILKIVKLTDNIDQKQQIPNKENTSASCSDEPVGIDQLIEISTDGQHVISTKSSENIINIVNPITHILKQNEEQNIVAVQEFSNNNTEILLNSKSSSIAKNNLKSEENLNNIYLNSLVQPTTQHNILDKPIINAKITESNEDLPLSIPVSKEHTSEVLINNLGYISETGNQICTTSFSETSNNLHYKLYSANYYNNNSNLNNNNFQQNYIDNNFQYANDNYSIEIDEVKKISGYLQESYHGSPSNVYCNLDDKMYYNNCDMSVSNILDNTTNNSSVCSPNSDLNNEVLSFRNVVENKYMSTFQTYCTYSNEELNYKSSDVETLSVNNFNQDVLTKENFKLLENVEKNLETVANLESLIIKNVTMQNQVPHNYATCYGNQNNTTNELRETNIPYTGNFALGCNIYNREYTPPVSVNNSIFTSQYNNMHYNEIREDYSPTLKKDCFTFSEDSNGNEIPCKKTKIPRKRNKTANNKENKFFQVFQDMEIASRHCNTPIEFTVSLEDIQITYLIERNKSLYCCTTCNVTYENIAQILDHGTSLHSSSHDFMENEYLSINVEKPDKSVKLIVNHEKKKFICKKCDKNFGEVAALYRHVAVHVSNQRYFCEECGKSFPVYRYLSLHKLIHSRIRVYACKLCPKTFRAKDTLRTHEIVHHEANQNKPFICEICGKGFVIDQYLKIHMKRHNKETGRICHICGKILKNEELCYKHIKEKHLVVNLKECEICHKTFHANRNLKAHMKLHGTRDFKCDQCEKEFFFKRDLVNHQHLHSGFRPHICHYCGKDFRSLGALYKHMRTHTKIKPHICGICQKAFSQLSSLQAHERVHSGYKPYKCQKCGKGYVQSNVFQQHMKKVHPGEII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -