Pnig051565.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380339.1:3855478-3858925[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.4 9e+02 2.2 1.1 1 23 378 401 378 401 0.91 2 15 2.6 3.7e+02 3.4 1.0 1 21 457 477 457 480 0.87 3 15 0.019 2.7 10.1 1.4 2 23 562 583 561 583 0.97 4 15 0.0005 0.071 15.1 1.0 1 23 586 608 586 608 0.98 5 15 0.02 2.9 10.0 0.1 1 23 614 636 614 636 0.92 6 15 0.00029 0.04 15.9 5.2 2 21 644 663 643 665 0.94 7 15 8e-05 0.011 17.6 0.3 3 23 670 690 669 690 0.98 8 15 0.12 17 7.6 2.0 1 20 696 715 696 718 0.94 9 15 1.4e-06 0.00019 23.2 0.5 1 23 724 746 724 746 0.97 10 15 0.0005 0.07 15.1 2.2 1 23 752 774 752 774 0.97 11 15 0.036 5 9.3 1.2 1 23 782 804 782 804 0.94 12 15 1.1e-05 0.0016 20.3 0.7 1 23 812 834 812 834 0.98 13 15 3.3e-06 0.00047 22.0 1.5 1 23 840 862 840 862 0.98 14 15 9.5e-05 0.013 17.4 3.4 1 23 868 890 868 890 0.98 15 15 1.3e-05 0.0019 20.1 0.2 1 23 896 918 896 918 0.98
Sequence Information
- Coding Sequence
- ATGTCAAACAATAATGATGTTCGTTCCCCTGAAAAAATAAATAACATAATTCAAAGATGTGCAGCCAAAACATGTTATAATAATTCAAAAGAAAAACCTTTACTACAGTTCTTTCCATTTCCAAATAATGAAAGATTGGCACGAATCTGGGCTACAAACGCAGATCGAGAAGATATTCTTTCTAAATCTCTCTTTGTTATGAAACGATATGTTTTATGTGCAGAACATTTTGAAGATAAATACTTAAAAACTGAAGATGTAACAAAAGCTGTGTTTAAAGATGATATTAAACCAATTCCTACAGTATTTCAAAATAAATTAAACTATTTTACCTGGCGAGAAACTAGACTGTTCGCTATGGATGACATAAAAGCCAACAATTCTGCTGCGAATAGTACTATATCCAGTGACATAAATGTACTACATAATGATATTCAATCCAATGTTGAGTTTGGCAGATTAACTTATACCGATGATTTATATGAGGAATTTGTTTCAAATCCAGGTGTTCTCAGTATGAAGACAGATGTTTCGGATCGACTTATAAAACGAGAGTACTGCAGATTATGTGCAAAACGATTACCTATTGCTAACTTAGTACCATTGTTTGATAGCAGAGGTTGTATTAGTTACGGTGAAATGTTAGAAATGTGTTTACCGGGAAAGTTCAAAGAAAATGATAAATATCCACATGAGATTTGTTCTTCATGCATCAAAAAATTAGAAGATTGTTGTAAAATATTGAAATCCTTTATTGAAGCAGATTTAACTATTAAAAAAAATTATAGTAATATTGAAACTGCAGCACTTATCAATGATAATATAAATAATCCAAATTCTGAACAGCTCGTGGGGGATATTTTAAATTCGTTTGAAGATAAATCAATAATTATGATAAGTCCAGATTTAACATCCGTTGAAAAACAAGAAATATGCAACAATAATCAAGAACAAACGGAAATTAAAGAGCAATCATTTTTTAACATTAATGACGAACTATGTAATGATTTAATTGACGATACTTTGAAAAATAATAATATTATTCAGAATTCAATACCTACTGAGGACTCATTATCATCTGAAATTAATAAAATTAAAACCACTGAACAAGATGAAAAACTAGAAATTATGTTTCAATGTATAACATGTTTAAAATTATTTAATAATAAAAAAGAAGTAACTGATCATTCACTTTCGACTCATACCAAAGAAAATAAAACAATTTTGTTTAGAATAGTAAAAGCAAAATTAAGAAAAAAAGAAAAGATTAAAACTTTACCTAACGAAAATAAAGATATTAAAGAAAATATTGAAGAGCTATTTTCAGTAAATGAAAAAAATGATAATAACGAAAAGGCAGAAATGAAATTTCAATGTATGAAATGTTTAAAATTGTATAAAACTAAGAAAAAAGTTCTTGAACATTCGTTGGCGGTCCATCCGACTCCTGGTGAAAGTAAGATTGTCTGCAAACTAGTTAATGTGAAAAAGAAAATAATTAACAATAAAAAACCAGCTGAAAAACAATCTTCATCCGTGAAATATGAATGTTTATTATGTAGTTCTCATCACAGAACTAAAGACACTTTAATTAAACACACTCATCTTCATCATCCAAATCTCACCAAAGGGAAATTTCTTTGTCGAATTCTTAAACCAAAAAAATACCGAAGCCACAAAGTTACATGTCTACGATGTAGCGAATCGTTTGAAAGTGTTATTAAATATCGAAAACATATGAAGAAACATGTTTCATTTAAATGCGCGGAATGTGGAATGTCTTTTGACAAAATTTATAAATTAAAGAATCATAGTCAGATGCATAAAGAACCGAAAATATATAATTGTATTGGATGTGGAGAACAATTTAATAGCAAAGGAGAGTTGTATACCCATGAAGAAATTCATAAACAGCCAAAAGAAGACGTCAAGTGTCAGAAATGCAATAAACGTTTTACCTCAGCGTATTCTCTTCGGAAACATCAACAATGTCACGAATCTTGGCTGTGTAATGTTTGTGGAAAACTATTTCCAAATAAAATGTATTTATCCCGTCATATACAAATTCATTCCGATGAACGTCCTTATAAATGTAAAGTTTGTATAAAATCGTTTAAAACAATAGCCGTGCTCATCAAGCATAGAGAATGTCATGCAACAGAGAAAAAATACATTTGCCAAACTTGCGGCAAACAATTCCGAACATCGGGGACATTACGTCAACATATGGCGATTCATTCGACGATAAAAAAACATGTTTGCGATATTTGCGGCAGTGGATTCCATCGTAGAGGGAATTTAGTAAAACATAAAAAAATACATAATTATATCCGCGATGATTTATATAAATGTAAAATTTGTGATAAAGGACTCACCAATCTCAACGCTTATAAATTCCACTTGCAGCAACACAAAACGGGTGATAAGAAACCGTTTTATTGTAATATTTGCAATAAAAATTTCGCAGTCAAGTATCAACTGCAAGTCCACGCCCGGTTGCATTCAGGTGAGCGTCCATACCAATGCGATTTCTGCGAAAAATCATTCCGCAGCAAAGCATCGTTGAACCAGCACCGGCTGATCCATCTCGATGTTTTCCCTCACGAGTGCGACTTCTGCGACCGGAAGTTCCGGCGGTTACAGTCGCTGATCGTGCACCGGAAGACACACACCGGTGAGCGACCGTTTCCGTGCCCGATCTGCTCGCGAGCGTTCGCTAACCGAGGAGATATGAACAAGCACAGGAAGATCCATGCCAGGAAAGCTGCAATAGTCAATGACTTACATTTTAATGATGAAAGTGTTCATAATGCTGATTATATGGATTATATTGATGGAGGTGAAGTGGAATGTCATATTTTACAGACGATTTTAAATAGTGATAGTTCATAA
- Protein Sequence
- MSNNNDVRSPEKINNIIQRCAAKTCYNNSKEKPLLQFFPFPNNERLARIWATNADREDILSKSLFVMKRYVLCAEHFEDKYLKTEDVTKAVFKDDIKPIPTVFQNKLNYFTWRETRLFAMDDIKANNSAANSTISSDINVLHNDIQSNVEFGRLTYTDDLYEEFVSNPGVLSMKTDVSDRLIKREYCRLCAKRLPIANLVPLFDSRGCISYGEMLEMCLPGKFKENDKYPHEICSSCIKKLEDCCKILKSFIEADLTIKKNYSNIETAALINDNINNPNSEQLVGDILNSFEDKSIIMISPDLTSVEKQEICNNNQEQTEIKEQSFFNINDELCNDLIDDTLKNNNIIQNSIPTEDSLSSEINKIKTTEQDEKLEIMFQCITCLKLFNNKKEVTDHSLSTHTKENKTILFRIVKAKLRKKEKIKTLPNENKDIKENIEELFSVNEKNDNNEKAEMKFQCMKCLKLYKTKKKVLEHSLAVHPTPGESKIVCKLVNVKKKIINNKKPAEKQSSSVKYECLLCSSHHRTKDTLIKHTHLHHPNLTKGKFLCRILKPKKYRSHKVTCLRCSESFESVIKYRKHMKKHVSFKCAECGMSFDKIYKLKNHSQMHKEPKIYNCIGCGEQFNSKGELYTHEEIHKQPKEDVKCQKCNKRFTSAYSLRKHQQCHESWLCNVCGKLFPNKMYLSRHIQIHSDERPYKCKVCIKSFKTIAVLIKHRECHATEKKYICQTCGKQFRTSGTLRQHMAIHSTIKKHVCDICGSGFHRRGNLVKHKKIHNYIRDDLYKCKICDKGLTNLNAYKFHLQQHKTGDKKPFYCNICNKNFAVKYQLQVHARLHSGERPYQCDFCEKSFRSKASLNQHRLIHLDVFPHECDFCDRKFRRLQSLIVHRKTHTGERPFPCPICSRAFANRGDMNKHRKIHARKAAIVNDLHFNDESVHNADYMDYIDGGEVECHILQTILNSDSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -