Basic Information

Insect: Pterostichus niger
Gene Symbol: pita
Assembly: GCA_947425015.1
Location: OX380341.1:4759068-4762037[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00018 0.025 16.5 1.6 1 23 205 227 205 227 0.98

2 10 2.8e-05 0.004 19.0 3.3 1 23 233 255 233 255 0.98

3 10 9.7e-06 0.0014 20.5 1.6 1 23 261 283 261 283 0.97

4 10 0.001 0.15 14.1 0.8 1 23 289 311 289 311 0.96

5 10 9.3e-06 0.0013 20.5 2.0 1 23 317 339 317 339 0.97

6 10 3.6e-06 0.00051 21.8 0.4 1 23 345 367 345 367 0.98

7 10 0.0034 0.48 12.5 4.7 1 23 373 395 373 395 0.98

8 10 7.3e-06 0.001 20.9 0.6 1 23 408 430 408 430 0.97

9 10 0.00037 0.053 15.5 0.3 2 23 436 457 435 457 0.97

10 10 8.4e-05 0.012 17.5 0.2 1 23 463 485 463 485 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00018	0.025	16.5	1.6	1	23	205	227	205	227	0.98
2	10	2.8e-05	0.004	19.0	3.3	1	23	233	255	233	255	0.98
3	10	9.7e-06	0.0014	20.5	1.6	1	23	261	283	261	283	0.97
4	10	0.001	0.15	14.1	0.8	1	23	289	311	289	311	0.96
5	10	9.3e-06	0.0013	20.5	2.0	1	23	317	339	317	339	0.97
6	10	3.6e-06	0.00051	21.8	0.4	1	23	345	367	345	367	0.98
7	10	0.0034	0.48	12.5	4.7	1	23	373	395	373	395	0.98
8	10	7.3e-06	0.001	20.9	0.6	1	23	408	430	408	430	0.97
9	10	0.00037	0.053	15.5	0.3	2	23	436	457	435	457	0.97
10	10	8.4e-05	0.012	17.5	0.2	1	23	463	485	463	485	0.95

Sequence Information

Coding Sequence: ATGGAAGATAGACAAGCTACATTACGTGCTATGCAAATATGCAGATTTTGTTTAACGGAGAAAGATCCGTTAAGTAACATTTACGAAAGGGACAACAAGAATGCCATCCCCCTACCTTTGCAAATAATGGCTTGTGTTACAATTGAGGTATTTGCAAACGATGGAATGCCGCAATTAATATGCGATGATTGTCGGCTGCAAACCAGGAAATCATATTCATTTAAAACAATGTGCAAGAAATCCGACGACTCACTGAAATTATTTCTTTCAACTGGAGTTTTAACTACACATGAGAAGGAGGATATTTTAAAGACAAAACCAGCCCAGAAAAGGATTCACGAAACACAAATACAAACTTCTGCACCAGTACAAAAACGTTCAAAACCGGAAATAGAACCAGGTCAAATAGAATCTCTAACAGAAATAATTAATTCCGAAATATTAATTCACGACTCAGAAGGTCATCCAGAACCATTCATCACTGAAGTCACCGAAGAAGACTGTGACGAGGACGACGAAGAAGAAGAAATAATCGAAGAAACTATCGAACAAGGAGAAATTCCTCCAACTGAACAACCTCAAATTCCTCCGAAACAAGTCATCACCCATTGTTTCAGTTGTAATCATTGTGAACGTTCCTTCCCTTTACAACAACTCctagatattcatatgcgccaacacactcgcgaaagaaaatttccctgctacgaatgcggaaagaaatttttctcacggcacgatctatctaaacacgttcaaacacatagcggagacaaaccattttcatgcgtagtttgcgataaatcattctcccgTGCAACCTTACTTCATCGACACGAAAAAGTTCATGTTTCTGTTCCGAAATATTTATGTACTTATtgtgataaaacttatttatcatctgaagacttagatactcatatgacgacacataaaaagaaacggccgtttaaatgcgatcattgcgataagtcttttgcttttaaacaaggtttagaacgacacgtaacaattcacaacccggaaaatccttacaaatgcgattattgcgaggagagtttCACCACTCCTGGAAAATTAGCACGACATGTAACAAGCCACGCTGGTGCGCGACCATTTCCTTGTAAACTTTGCCCAAGAACTTTTCTTTTAAGCCATCATTTAACGCGCCATTTACGGAATCATTACAATAGAAAAGCGATGGAAAATGAGTACGGCGAATTCAAATGTGATATTTGTAGCATGTCTTTCAGAAGAAAAGATTCTTTAGTAAATCACACCGCGATTCATTCAATGGTGAATTTAAAGTGCGTAATTTGTAACAAAGAATTTTCGGACGCAAAAACGGTCAAAGAACACGTTTCCACTCATTTAGCAGGTTTACCATTTCCTTGTGACAAATGCGATTATTCCTTTGAAACTCAAGAAGAACTCGAAGATCATGAAGTTAAACATGTTGATGATGACGAAGAAGAAGAAGATGAATACATCTTGGAAAATGATTCATTACAAGTTGTACAATCACTACAAGAAGAAGGTGATGAACAACCAAAAATAAGAAGATCACAACGAACAACTAAAATTAAAAATTATGCCGATTTTTTAAAAGATGAATTAGGTTCAGATTCCGACGAAACAGTTGACGAACCGGAAGACATTAAACCAGAACTAACTAAAATACAAATCGGAACTATTCAACCGGTAATTAGAAGTGAAACAATTAAAATGTATAAAGGAGTTAAAGAGAAAACAAATAATTCTGAACAAAGATATATTCAACCTCAGATAGATTTACCTCCTCCACAGGAACCACCTAAATCAGAACCAGCCCACAAATCTGTCACTAAAATCACTACTTTAGAGAACTTAGGTATTTCCAAACAAACTCTCGATGCAATGACTGAAAAATCCGGATTTGTAGAAATGAAATTAGGACAAAAAGTTATCCGAGTCCAAAAACTAATGATGACTAAAGCCGAATACCAAGCAATGTCCAAAAAAACTAAACTAGAAATGAAAGGTTCTACAATTGTTGTTCAAAACCTTGAAGGAGGTCTCGACTTAAAAAAACTAGCTCAACTCACTAAAAATGCTGTCAAAGATCCACTAAATGAAAGCATTCCGAAAATTTCAGAAAGTAAAGTTGCTATACAACACCAACATAATGTTGACGATGTTCAACTTCCAAAAACACCGGTGAGAACCTACGTTAAAAAAGCAGTTATCAAAAAGGAAGACTTGTCACAAGAAAATCAAGAAATTGAAGAAATAAATAAAGAAATTATTACAGAGAGTCAAAGTATTGATTTAGATACGGTTGATGATGAATCTGCTACGATGCAGGAGACTGATATTTTGGAAACATTTTAA
Protein Sequence: MEDRQATLRAMQICRFCLTEKDPLSNIYERDNKNAIPLPLQIMACVTIEVFANDGMPQLICDDCRLQTRKSYSFKTMCKKSDDSLKLFLSTGVLTTHEKEDILKTKPAQKRIHETQIQTSAPVQKRSKPEIEPGQIESLTEIINSEILIHDSEGHPEPFITEVTEEDCDEDDEEEEIIEETIEQGEIPPTEQPQIPPKQVITHCFSCNHCERSFPLQQLLDIHMRQHTRERKFPCYECGKKFFSRHDLSKHVQTHSGDKPFSCVVCDKSFSRATLLHRHEKVHVSVPKYLCTYCDKTYLSSEDLDTHMTTHKKKRPFKCDHCDKSFAFKQGLERHVTIHNPENPYKCDYCEESFTTPGKLARHVTSHAGARPFPCKLCPRTFLLSHHLTRHLRNHYNRKAMENEYGEFKCDICSMSFRRKDSLVNHTAIHSMVNLKCVICNKEFSDAKTVKEHVSTHLAGLPFPCDKCDYSFETQEELEDHEVKHVDDDEEEEDEYILENDSLQVVQSLQEEGDEQPKIRRSQRTTKIKNYADFLKDELGSDSDETVDEPEDIKPELTKIQIGTIQPVIRSETIKMYKGVKEKTNNSEQRYIQPQIDLPPPQEPPKSEPAHKSVTKITTLENLGISKQTLDAMTEKSGFVEMKLGQKVIRVQKLMMTKAEYQAMSKKTKLEMKGSTIVVQNLEGGLDLKKLAQLTKNAVKDPLNESIPKISESKVAIQHQHNVDDVQLPKTPVRTYVKKAVIKKEDLSQENQEIEEINKEIITESQSIDLDTVDDESATMQETDILETF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01226082;
90% Identity: -
80% Identity: -