Pnig017001.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380343.1:3865155-3867002[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.022 3.1 9.9 0.2 3 23 223 243 221 243 0.95 2 12 0.0029 0.41 12.7 8.9 1 23 248 270 248 270 0.98 3 12 0.0019 0.28 13.2 0.6 1 23 299 322 299 322 0.97 4 12 0.0032 0.45 12.6 1.2 1 23 329 351 329 351 0.97 5 12 0.0014 0.19 13.7 2.4 1 23 357 379 357 379 0.98 6 12 0.00012 0.017 17.1 2.6 1 23 417 439 417 439 0.94 7 12 4e-06 0.00057 21.7 0.9 3 23 447 466 446 466 0.98 8 12 2.8e-06 0.0004 22.2 3.0 1 23 472 494 472 494 0.98 9 12 1.2e-05 0.0017 20.2 2.1 1 23 500 522 500 522 0.99 10 12 0.00012 0.017 17.0 2.6 1 23 528 550 528 550 0.98 11 12 0.0085 1.2 11.2 6.4 1 21 556 576 556 578 0.87 12 12 1.9e-07 2.7e-05 25.9 0.7 1 23 584 606 584 606 0.98
Sequence Information
- Coding Sequence
- ATGATTTGTAAAACTTGTGTTAAAAGTGCACATGACGCTTTCATCTTTAAAACGAAAATTCGTAAAACTGAATTGTGGTTACAGACTAATATTTCTATACTAAAAAAAGTAACACCTAATGAAAAAACTGATTATAAAAAGTCAGTCAATGCCGCCTCGGATCAAGTTAGTTTACAAGACGATACACAAGCAATTAAAACTTGGCTCGAGTCTAAAATTTCTAAGTTGGAAATAGTCCAACACAAAACTAAGAAATGCGATAATCCAGTGATCCAAAAAACTGGTTCTCATGATTTTCAAGAAACTCTGAGCGCGTCGCCTGAATTAAACAAGAAATGTATCACCATCGTGAAAAGAAAAAGAAAAGCTGAAACTGTACTGCAATCTGTTTCTAAATTACCAAAAAAGCTGCCTGAAGGAAAAATAAATAATTTACAAATAAAAACCTCAGAAGAAATGGTAAATAGTAAAATGCCAGAAATTGTCAGTCCAAGAAACAAAAAAGATGATAAATCTACAGAAAATATTAAAGGATTTCAGGATTTAACTAACACAAAGAAAGATTTAGTTTCAAACAAGAAATGTGTAGATAAATATAAGCCTAATAAAAATCTCATTGAACTATTGCCAAATTGTTTAACAGATCATGATTACAATTTAATTTTCTGTGAAGTTTGCTCTGAATATTTTCCGAGTAAATATTCATACGAAGAACACAAAACAATTCATACTGTTAAGAATCATAAATGTAAATACTGCACAAACAAATTTAAAACATTTGCACACTTAAAAAATCATTTGAAATCTCATGCAAACAAAATTGACCAAGTATTAGCTCAATACACACTTGACATTAATTATCCTCTTTACATGAACTCAAAACAGGAAAATTTTTTTATGTGTAAAGTATGTGTTGTTGTTTATAAACGATTTTCTTCATTGAGCGAACATTTGAAAATTACTCACGGCACAAAGGGCAAAAAATATTGTTGTAGTGTTTGTGAAGAAGGTTTCAACAAACGATTAGATCTACAAACTCATCTTCAGGCGCATACAGAGGGTTTACCTTATTTTTGCGTGCACTGTCCAAAAAAGTTTAATAAAATGTTGGATTTAATCAACCACGTTAAGACTCATAGTTCCAATGCGCCACTTTTTAATATTCCATATGAGCCTAACTTTGTAAAATATCGCAAAGATCCAGAAGAAGGAGACATACCTTTCTTAAAACACAAAAACGATAAAATATATTTGTGTCCGCACTGTGGAAAAAAATATAACCAGAGATATTTGTATAAAGCTCATTTAGAGTTCCACGCAGGAAACGATAAAGCTATTTGTCAAATTTGTGGTAAAACTTATCGTCGTGCCCAACTTAATAATCATATGCGAACTCACGATCATTCAGTTCCTCATGAATGTGATATTTGCGGAAAAGCTTATAAACAAAAATCATATTTAAAATATCATAAGATGACTCATACTAAACAACTTCCTTATAAATGTGAAGTTTGTGGAAAACTTTTCAAAGCAAGATACTACTTGAGATCTCATATGAAGTATCACAACAATGAAAGAAATCATGAGTGTCATATTTGTGGTACGAAATACTTTAAAAAAGGACAGCTGGTTGCTCATCTTCTAACTCATACACAAGAAAGACCTTTTACATGTAAATATTGTGATAAATCGTTCCGTACCTCAACAAACTGTAAATATCATGAATTTGCTCATGAAAGTAAAAGACCATTTGAATGTAATATTTGTGAGAAATCTTATTCGCGCCCTAATACCTTACAACAACATATGAAAATACACAACAAAACCCAGAATTGTATTGTTGAATAA
- Protein Sequence
- MICKTCVKSAHDAFIFKTKIRKTELWLQTNISILKKVTPNEKTDYKKSVNAASDQVSLQDDTQAIKTWLESKISKLEIVQHKTKKCDNPVIQKTGSHDFQETLSASPELNKKCITIVKRKRKAETVLQSVSKLPKKLPEGKINNLQIKTSEEMVNSKMPEIVSPRNKKDDKSTENIKGFQDLTNTKKDLVSNKKCVDKYKPNKNLIELLPNCLTDHDYNLIFCEVCSEYFPSKYSYEEHKTIHTVKNHKCKYCTNKFKTFAHLKNHLKSHANKIDQVLAQYTLDINYPLYMNSKQENFFMCKVCVVVYKRFSSLSEHLKITHGTKGKKYCCSVCEEGFNKRLDLQTHLQAHTEGLPYFCVHCPKKFNKMLDLINHVKTHSSNAPLFNIPYEPNFVKYRKDPEEGDIPFLKHKNDKIYLCPHCGKKYNQRYLYKAHLEFHAGNDKAICQICGKTYRRAQLNNHMRTHDHSVPHECDICGKAYKQKSYLKYHKMTHTKQLPYKCEVCGKLFKARYYLRSHMKYHNNERNHECHICGTKYFKKGQLVAHLLTHTQERPFTCKYCDKSFRTSTNCKYHEFAHESKRPFECNICEKSYSRPNTLQQHMKIHNKTQNCIVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -