Pnig010661.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380334.1:38211371-38225609[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00075 0.11 14.6 4.2 2 23 34 55 33 55 0.95 2 15 0.00064 0.091 14.8 0.9 1 23 61 84 61 84 0.95 3 15 0.0067 0.95 11.5 1.4 2 23 88 110 87 110 0.96 4 15 9e-05 0.013 17.5 0.7 3 20 120 137 118 139 0.92 5 15 0.0024 0.33 13.0 1.4 1 23 147 169 147 169 0.99 6 15 0.0093 1.3 11.1 0.4 1 23 175 197 175 197 0.97 7 15 0.0039 0.55 12.3 3.7 1 23 203 225 203 225 0.93 8 15 0.00056 0.079 14.9 1.8 1 23 231 253 231 253 0.99 9 15 0.053 7.4 8.7 1.0 3 23 508 528 506 528 0.96 10 15 2.8e-05 0.004 19.0 0.5 2 23 569 591 568 591 0.94 11 15 4.5e-05 0.0063 18.4 0.1 1 22 601 622 601 622 0.93 12 15 7e-07 9.9e-05 24.1 1.6 1 23 630 652 630 652 0.98 13 15 0.0064 0.9 11.6 2.6 3 23 660 680 659 680 0.98 14 15 0.00058 0.082 14.9 0.9 1 23 686 708 686 708 0.93 15 15 0.64 91 5.3 3.5 3 23 716 736 714 736 0.94
Sequence Information
- Coding Sequence
- ATGAGATCAAATAGTGAATCTGGAAATATGCCATCTGATAATAACAGCAATATTAAATGTGAAACTATACAAATGAATACTGATCCAAATAAAAATTGTCAATGTACTATATGTGGTCAGAAATTTAGATTTTACAAAGCATTGCAGAAACACGAAAGTCGGCATCAAGGCGATGGAGGATTTATTTGTAAAACTTGTGGAATGCGATTTACAAGTTCAGATGCGCGTGAAAAGCATCGTGATAAAGTCCATAAAGTATTACGATGCAAAATTTGTAACATTCGATTTGATTTTGAAACAGAATATTTACATCATATAAACAGTTTGCATGATGGCCGAGACCGCGAATTATCAATTTGCAGTACTTGTGGCAAACAGTTCAAAACAAAAGGAGAATTAACACATCATGTATCCTCTAACTGTGGAACAATCAAAAATTACCAATGTTCTGTTTGTTTCCAAACTTTAATGACTGCTGGGTCGCTCCATAATCATATGTTGCGTCATACAGGACACCGAACTTTCATGTGTCGCTTTTGTGCCAAAACATTTTTAACTGCCGGACAATTGACAGTTCATGAACGAATCCATACACAAGAAAAAGCTTTCATATGTGAGGTATGTAATAAAGGATTTTGTCACCGTCAAAGTTTGATAACTCACAGTACACTCCATACCGGAATTAAACCGTATCAGTGTGAAGGATGTGGAAATTCATTCTCTTGTGTAGGAAACCTGTTGAAACATCGCAAAACGCATTCAGATAGTTGTGGAAAAATGCCTCTGACAACACACCGAGTCAAAAATCCATCGACAAAGTTAAAAGTTCAAGTAAATACACCACGTACTTCCAAATTGCGCACTTTGGAGAAACGTAAGAAATTTGAAGAAATTACAACACAGATTTCAAGTGATAAAACGTGGCAAAAGGAAGTGTCAAACAGCAGTACTTTACAATCGAATGTCATGACTCAAGAAATTGAAAATAATGTTACCAATAATTATGGACAATCTGATTTAAATATTACTGTTGAGCTACAGGATAAATATGAAAAATCTTCAAATAATTTACTTTCAGAACCCAATAATTGCATAAAACAAGAGAATTGGATTCCTTCTATTAATTTAAATAACGAAGAACGAAATTTTGCCTGTCTAGTTCCGTATCAAAAATTTCCATTTGATTCAACCGATTTTAACTTTATCCAATCTTTACATAAAAAGCCAGATGAATTACTGAGAATAAAATCTGAGGACAACATATTGGACCAAGTTGATGAAATTAATCATGCAGCGGAATCAATTAATGAAAGTTTAGAATGGTCAGAAGATGTAGCATCTAACCATAATAATGTATCTTCTGATGATTCCGTTGACTTACAAACCAGGAAATTTAAATTGAAACAAAGGGTACAAAAAAATAAGAAAAATGTAAAGTTTAGAAGAAAAAAGACGATTGATAAAGCAAAATTACAACAGTTTATAGAAGAACGGGAATTTGATGAAGTAAATGGAATGAATTGTAAATATTGTGGAAGCCATTATTCTGTGCCTCTTTGGCTTCTGAAACATGAACAGAAACATGAAGTGACGCTGAAAAACGGGTATTCGCAAGGAATTTTCAAGTGCAGTTGTTGTACTGAAACTTTTAAAACAAAAGATGAATGTATTAATCATCAACATTGTGAGCACGTCAATGAATTAACATGTAAGGAATGCGATCGAATCTTCGCAAATCCTGATAGTTTTAAAGCTCACCAGAATTTTTATCATCTGGGTGTACCACGGAAACGTTACGTTTATATATGTGAAAAATGTGGACGTGTGTTTAAGCAGAAGGCACTGTTAGTAGTGCATGAACAAACTTCTTGTGGTTCAGGCCCTCTGTTTCCATGTCGAGAATGTGGCAAAGCTTTCACAAGCAAGCACGTACTGAAGAGTCACATGCGAGTGCATGAGCCAGAAAAGTCTTTGCTGTGTAAGTTTTGTGGGAAGAGTTTTCACTGGAAAGGACAACTTAAAATTCATGAACGAAGCCATACAGGAGAAACACCATTCAAATGCCAGTTTTGCCCAAAAGCCTTTGCATATCGGGAGAGTTTAATAACACATAATACTCTTCATACAGGAATTAAACCTCATCTATGTGAAGCCTGTGGATCGAGATTCTCTTGCATCGGGAATTTGTTAAAACACAGACGAACTCACGCCAATACATGTGGAATTATGTCTCAAGTCAAAACTGAAGTTACATGA
- Protein Sequence
- MRSNSESGNMPSDNNSNIKCETIQMNTDPNKNCQCTICGQKFRFYKALQKHESRHQGDGGFICKTCGMRFTSSDAREKHRDKVHKVLRCKICNIRFDFETEYLHHINSLHDGRDRELSICSTCGKQFKTKGELTHHVSSNCGTIKNYQCSVCFQTLMTAGSLHNHMLRHTGHRTFMCRFCAKTFLTAGQLTVHERIHTQEKAFICEVCNKGFCHRQSLITHSTLHTGIKPYQCEGCGNSFSCVGNLLKHRKTHSDSCGKMPLTTHRVKNPSTKLKVQVNTPRTSKLRTLEKRKKFEEITTQISSDKTWQKEVSNSSTLQSNVMTQEIENNVTNNYGQSDLNITVELQDKYEKSSNNLLSEPNNCIKQENWIPSINLNNEERNFACLVPYQKFPFDSTDFNFIQSLHKKPDELLRIKSEDNILDQVDEINHAAESINESLEWSEDVASNHNNVSSDDSVDLQTRKFKLKQRVQKNKKNVKFRRKKTIDKAKLQQFIEEREFDEVNGMNCKYCGSHYSVPLWLLKHEQKHEVTLKNGYSQGIFKCSCCTETFKTKDECINHQHCEHVNELTCKECDRIFANPDSFKAHQNFYHLGVPRKRYVYICEKCGRVFKQKALLVVHEQTSCGSGPLFPCRECGKAFTSKHVLKSHMRVHEPEKSLLCKFCGKSFHWKGQLKIHERSHTGETPFKCQFCPKAFAYRESLITHNTLHTGIKPHLCEACGSRFSCIGNLLKHRRTHANTCGIMSQVKTEVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226108;
- 90% Identity
- -
- 80% Identity
- -