Basic Information

Insect: Pterostichus niger
Gene Symbol: -
Assembly: GCA_947425015.1
Location: OX380338.1:30953361-30960152[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0022 0.31 13.1 0.2 1 22 189 210 189 210 0.93

2 16 0.0024 0.34 12.9 0.7 3 23 221 241 220 241 0.97

3 16 0.00038 0.054 15.5 0.8 1 23 247 270 247 270 0.90

4 16 0.06 8.4 8.6 0.1 2 23 403 424 402 424 0.94

5 16 0.0019 0.26 13.3 0.9 1 23 443 465 443 465 0.98

6 16 0.04 5.7 9.1 1.8 1 14 470 483 470 484 0.91

7 16 0.26 37 6.5 2.7 1 23 725 747 725 747 0.94

8 16 0.0068 0.96 11.5 3.6 1 23 752 774 752 774 0.95

9 16 0.22 31 6.8 2.0 2 23 781 802 780 802 0.97

10 16 0.0017 0.24 13.4 0.6 1 23 807 829 807 829 0.95

11 16 1.8e-05 0.0026 19.6 2.9 1 23 835 858 835 858 0.97

12 16 7.3e-05 0.01 17.7 2.5 2 23 870 891 870 891 0.97

13 16 0.00012 0.017 17.1 0.5 1 23 897 919 897 919 0.96

14 16 0.00011 0.016 17.2 1.0 1 23 925 947 925 947 0.98

15 16 6.6e-06 0.00094 21.0 2.6 1 23 953 975 953 975 0.97

16 16 0.029 4.1 9.5 0.4 1 21 981 1001 981 1005 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0022	0.31	13.1	0.2	1	22	189	210	189	210	0.93
2	16	0.0024	0.34	12.9	0.7	3	23	221	241	220	241	0.97
3	16	0.00038	0.054	15.5	0.8	1	23	247	270	247	270	0.90
4	16	0.06	8.4	8.6	0.1	2	23	403	424	402	424	0.94
5	16	0.0019	0.26	13.3	0.9	1	23	443	465	443	465	0.98
6	16	0.04	5.7	9.1	1.8	1	14	470	483	470	484	0.91
7	16	0.26	37	6.5	2.7	1	23	725	747	725	747	0.94
8	16	0.0068	0.96	11.5	3.6	1	23	752	774	752	774	0.95
9	16	0.22	31	6.8	2.0	2	23	781	802	780	802	0.97
10	16	0.0017	0.24	13.4	0.6	1	23	807	829	807	829	0.95
11	16	1.8e-05	0.0026	19.6	2.9	1	23	835	858	835	858	0.97
12	16	7.3e-05	0.01	17.7	2.5	2	23	870	891	870	891	0.97
13	16	0.00012	0.017	17.1	0.5	1	23	897	919	897	919	0.96
14	16	0.00011	0.016	17.2	1.0	1	23	925	947	925	947	0.98
15	16	6.6e-06	0.00094	21.0	2.6	1	23	953	975	953	975	0.97
16	16	0.029	4.1	9.5	0.4	1	21	981	1001	981	1005	0.85

Sequence Information

Coding Sequence: ATGAACCAATGGATTCCGAATACGTTAAACATTAAACTGCCGCCGGGAGTCAGAATTGAAAGAAATGTAGACGGAAGTTCAAATCAAGAACATGAGAAGAAAATTGAAACGTTTGAAAAGTCTAATACGGAAAGCAATAAGGGCTCAATCTATAATGAATTTTTAAGTAAAGTCAGTCATCTTACTACCTTAAAAATAAAAAAAATAGAAGACGATGCAAATGAAGAAAAAAGAAAAGATATGTCAGATATCGTAGACAGTTTAACAAAATGTGGATTAATAGTTAAAAAAGTGCCTTGTAGTACTGTTGAAATATCAGATATAAACCTTGAAGTTGATAATTGTCCAAAAACAGaatctattgaagaagacgaagatttcgacggtgacaatgaatcagaatatgaaattgagactctggatgatgacgaatcagatttggaatttgttccagaattgaaAAGGAAACGTGAAGAAAAACTTTCGAAAGAAACAGAGAAAAAGCCAACACAACAATTTCAACCAAAAAAATCCAGGGAATTTATCAAAATTCAAAGCACAAATTATTTATGCGTGATGTGCAACGAAAAGTTTCCATCATTCGATCTTTTAACATCGCATATGCGTAGCACAACTCCATGTCGAGTTGTCGTTGTGGCATGTCCAGTTTGCGGAAAAGAATTTCCCAGTAAATCACGATGTTCAGCGCATATGTATACGCACAAAGAAAAACCCAAATACCCGTGTGATAAATGCAAGAAACAATTTTCAAATCCAGTTACTTTGCAAATGCATTCTGAATATAATCACACCGAACATTTTGATTCAATAGACGGAGGATGGAAATGCAAAATACATTCATTCTATGAAGACAACAAATTAAATCTTAAAGATCCCATCGAAATGGAACCTATTGTAACGATCGTAGAATTACCAGCTTCAACAGATTGGAGAATAACTAGAAGGAAGATAGCGAAAGATGATGATGATAATGATAGTGATTATGAACCTCTGCTAGTTCGAAGAAAAACTAAATCCAATATGACAAAACAAAAGAAGACTAAGATACCTAAAACTGTAAACAGAAAAATAGTACCGCGTAAAGCGAAATACGAAGGTTACAAAAATCCGTTTGTCTACGACCATTTAAACACAAAAGATGATAAACCAACCTCAGAACGAAAATCAAATTCAAAAACAAAATGGACCTGCTTAATTTGTAATAAAAACTTGACTGGAAAAACAGAACTGATCGATCATTATGCTGCACATAAAGAAGATAAAATTAAAATAGAGGATGGTGAAAAATTAACAGAGAATGAAGTGTATCAATGTGAAGTATGTCTCAAAGAATTTACCTCGGAAAAACGATTTGAAAAACATGCTGAAACACACACCGATAGTCGCTTTAACTGTGATTATTGCGAAAAAAGTTTTAAGCGTCCATATGAAGATGATCAAGCCATTCTCACTATAAATTCAGACAACGAGATAATGGAAACAGTTGAATGGGAACATGATTACGCTCAAAATACAACTACCGAGGAGTACATTGATGAAACATACTTAGAGGATGTAGTAGAAAATACAACAGAAAATGATTTGATAGAAAGTACAACAGAAAATGTATTGATAGACAGGACAGATATTGTTAATAATATTGTAAATCAAAAGACCCAAGAATTAACTATTGAAAAACAACCAACTTTTGATTCATTTACAAGCAATGCAATTAAGGATCATAAATGCTACACTATTCGTGTAGGGTCTGATGACAAGGAAAAACATCAATGTGACAACAATAACTTTTTTGGACAGCCTGATGCAATTAAGTTTCCATTTCCTGTTTGGGACAATAACAATCAAAAATCTGAAGACTGTTATGGTGAGAAGTTAACAATAAAAGTAGAACCACTCGATATCAACTGGGATGACGAAGATTTAACTCTCATGGACCTGAAGAATAAGATGGGGCTGGCACCGAAGAAAAAACGTAAACAAAGAACAGCAAAAACAAATCCAAAAACATACCGTAGTCAAAAACAGCCGTGCATTCTATGCGGAAGTATTATACGTGGCAGATCTGCTCTTGTGAACCACTATCTCGTCCACAAGGAATCTAAAATCAAATCTAACTTGGAGCTCATCAACAAATATGGAGATGAGGACTTCTTTCGTTGTTGCGTATGTATGAAAGAATTTGTTACTAAACCACAATTAGACAAACATAGCGAATATCACGTACAGCGTCCCTTTTTCTGCGAAAAGTGCAATAAAAGTTTCAAACAAACTCAAAACTTTATATTTCACATGGACTCTCACCGTTCTAATACTGAATTAAAATGCAATACGTGTGATTTTACTACCACCTTCAAATTAGCTTTTGATAAACATGTAAAAAGTCATGCACGACAGGAGTACAAATGTGATGAATGCGATAAAGTTTTTCCAGCACGTACTTGGTTCTTGGAACATAAGAATTTTCATACTGGAGAACGGCCATTTTCTTGTGAAGAATGTGGAAAATGTTTTCCCTACAGTCGTTACCTGACAGCACATAAAAAGAGTATGCACCCTCACTGTTATTTCAAAGAACCTGAAATAAACGAATGTGCAATTTGTCAAAAAAGATATTCTCATAAAAACAGTTTAAGACTTCACATGAAAGTACATACGGGTGAAAACACTTATTTATGCGATATATGCGGAAAGAGATTGTCAAGTACCGATAAACTTCAGTTACATCGTCGGATTCATACTGGATATAAACCATATGCATGTACTGTATGCGAAAAACGATTCACAAAGAAAGATATTCTTACTGATCACCTGCGTACTCATTCTGGTGAGAAACCTTTTGCTTGTGAAACTTGTGGTAAATGTTTCTCACAGCGGTCACCTCTTACGATTCACCGAAGATATCATACTGGCGAACGTCCATACGTTTGTCATCTTTGCAATAAAGGTTTTGTATCTAAAGGGATTCTTGGTATTCACCTTAAACAGGGTAAGCACTAA
Protein Sequence: MNQWIPNTLNIKLPPGVRIERNVDGSSNQEHEKKIETFEKSNTESNKGSIYNEFLSKVSHLTTLKIKKIEDDANEEKRKDMSDIVDSLTKCGLIVKKVPCSTVEISDINLEVDNCPKTESIEEDEDFDGDNESEYEIETLDDDESDLEFVPELKRKREEKLSKETEKKPTQQFQPKKSREFIKIQSTNYLCVMCNEKFPSFDLLTSHMRSTTPCRVVVVACPVCGKEFPSKSRCSAHMYTHKEKPKYPCDKCKKQFSNPVTLQMHSEYNHTEHFDSIDGGWKCKIHSFYEDNKLNLKDPIEMEPIVTIVELPASTDWRITRRKIAKDDDDNDSDYEPLLVRRKTKSNMTKQKKTKIPKTVNRKIVPRKAKYEGYKNPFVYDHLNTKDDKPTSERKSNSKTKWTCLICNKNLTGKTELIDHYAAHKEDKIKIEDGEKLTENEVYQCEVCLKEFTSEKRFEKHAETHTDSRFNCDYCEKSFKRPYEDDQAILTINSDNEIMETVEWEHDYAQNTTTEEYIDETYLEDVVENTTENDLIESTTENVLIDRTDIVNNIVNQKTQELTIEKQPTFDSFTSNAIKDHKCYTIRVGSDDKEKHQCDNNNFFGQPDAIKFPFPVWDNNNQKSEDCYGEKLTIKVEPLDINWDDEDLTLMDLKNKMGLAPKKKRKQRTAKTNPKTYRSQKQPCILCGSIIRGRSALVNHYLVHKESKIKSNLELINKYGDEDFFRCCVCMKEFVTKPQLDKHSEYHVQRPFFCEKCNKSFKQTQNFIFHMDSHRSNTELKCNTCDFTTTFKLAFDKHVKSHARQEYKCDECDKVFPARTWFLEHKNFHTGERPFSCEECGKCFPYSRYLTAHKKSMHPHCYFKEPEINECAICQKRYSHKNSLRLHMKVHTGENTYLCDICGKRLSSTDKLQLHRRIHTGYKPYACTVCEKRFTKKDILTDHLRTHSGEKPFACETCGKCFSQRSPLTIHRRYHTGERPYVCHLCNKGFVSKGILGIHLKQGKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -