Basic Information

Insect: Pterostichus niger
Gene Symbol: -
Assembly: GCA_947425015.1
Location: OX380340.1:36648401-36650379[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0011 0.16 14.0 1.0 2 23 221 242 220 242 0.97

2 10 5.6e-08 7.9e-06 27.5 4.9 1 23 256 278 256 278 0.97

3 10 1.4e-05 0.0019 20.0 3.7 1 23 284 308 284 308 0.98

4 10 0.12 17 7.6 5.5 1 23 314 336 314 336 0.98

5 10 0.0035 0.5 12.4 1.5 3 23 344 364 343 364 0.98

6 10 9.8e-07 0.00014 23.6 0.4 1 23 370 392 370 392 0.99

7 10 3.4e-07 4.9e-05 25.1 1.9 1 23 398 420 398 420 0.97

8 10 0.00048 0.067 15.2 0.1 1 23 426 448 426 448 0.97

9 10 6.4e-06 0.0009 21.1 0.1 1 23 454 478 454 478 0.97

10 10 1.3e-05 0.0019 20.0 0.6 1 23 484 508 484 509 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0011	0.16	14.0	1.0	2	23	221	242	220	242	0.97
2	10	5.6e-08	7.9e-06	27.5	4.9	1	23	256	278	256	278	0.97
3	10	1.4e-05	0.0019	20.0	3.7	1	23	284	308	284	308	0.98
4	10	0.12	17	7.6	5.5	1	23	314	336	314	336	0.98
5	10	0.0035	0.5	12.4	1.5	3	23	344	364	343	364	0.98
6	10	9.8e-07	0.00014	23.6	0.4	1	23	370	392	370	392	0.99
7	10	3.4e-07	4.9e-05	25.1	1.9	1	23	398	420	398	420	0.97
8	10	0.00048	0.067	15.2	0.1	1	23	426	448	426	448	0.97
9	10	6.4e-06	0.0009	21.1	0.1	1	23	454	478	454	478	0.97
10	10	1.3e-05	0.0019	20.0	0.6	1	23	484	508	484	509	0.96

Sequence Information

Coding Sequence: ATGAATTTAAATGAAACAAATAACTTAAAAGGCTTAAACATTATATTAAATAATTTAAATTTAATGAATCTACCATCATCATTATGGGGTATTCATATACATCCCAAATATGACTATATCGCAGCTATTCATGTTGGTTTTGAACAATCCTTAACTATTGACAAAGGAATAATTGTCCAGTATGACAGTATAAACGACAAAATTGAAGCCAGTATTTTTCTACATTGCAAAGCAGTATCTATACCTCAAATTAATCCAGTAATAACTTCTATAAACGATCTATGCCAGTTAATATTTTCAGTACATGACCTAAAAATTTGTGACAATTGGCAGCAAGTCAATAAAAACGATAGTTGCCTTATATATGTCGCCTCTGGGTTTGACAAATGCGTTATGTGCAATACGGATAAACAAAAATTAATTACTTACAATTTTGAAGACAACGACAAATCACCACAGATTGACACTTCGGAGTCCATTTGGCAAACTAATGATGTACAGCTAAACGAATCACTTTCAGATAATCTTATAGCTTCTAGTGAAGATGTAGATGTAGTAGTTAAACAAATACTAGAACTTGAGTACACTAATCAACCAAATGATATTCACATTGCATCTAATACAGAAACAACTGTAAGTGCAAACCAATCAGATCACTTGAAATGCAGCACTTGTTCGAAACAATTGACTAGTCTGACTGGGTTAATTAGACATGAACGCACACATGCAAAAACGAAAATTAATAAAATTGTtgacgataacttgcataactgcaatgtttgcggaaaatcttttcgaacgccaagtcatttaaaagttcatcaaaggaaacatacgaatgaaagaccgtatgaatgtaattatgaattttgcggaaagaaattttttaccaacagccatttaaaagaacatttaagactgcacacgggcgaaaaaccttacaaatgcccttattgtgataaagctaatagtcaccaatcagcgcatcatagacatgtacttacacatacgaatattaaacctaatttatgcaatatttgcggcaaaacttttTGTAAAGGATACAGAATGGAAGATcatttagcaacacatagtacagaaagaccatatgagtgtgagatctgtcagaaacggtttgcgaagcctgcaagtttaaatgtccatcggaaaacccacatagggaccaggccacacatctgtaacatttgtggcaaacgatacagctcgcaaagtaatttaggaacacatatgaaatcacatacagGTATAAAACCATACGCTTGTGGTGCTTGTCCAGCCCGCTTTGTTCACCCCCGTCTTCTGCGCATTCACCAGAGGGTTCATACAGGTGAAAAGCCTTTTCCATGTCCAGAACCTGGTTGTGGAAGAGCTTTTGCAAAGAATGTGCACCTGACAGTACATCGGAGGGTCCATAGCGGGGAAAGGCCGTATGTATGCTCTGAACTTGGATGCACCAGGGCGTTTACCACCTCAGGAAACCTTTCTGCGCATAAGAGGGTGCATCATCCTCAGCATCAACAACCAGGAGGTGCTAATGTTGCTGTCACATGA
Protein Sequence: MNLNETNNLKGLNIILNNLNLMNLPSSLWGIHIHPKYDYIAAIHVGFEQSLTIDKGIIVQYDSINDKIEASIFLHCKAVSIPQINPVITSINDLCQLIFSVHDLKICDNWQQVNKNDSCLIYVASGFDKCVMCNTDKQKLITYNFEDNDKSPQIDTSESIWQTNDVQLNESLSDNLIASSEDVDVVVKQILELEYTNQPNDIHIASNTETTVSANQSDHLKCSTCSKQLTSLTGLIRHERTHAKTKINKIVDDNLHNCNVCGKSFRTPSHLKVHQRKHTNERPYECNYEFCGKKFFTNSHLKEHLRLHTGEKPYKCPYCDKANSHQSAHHRHVLTHTNIKPNLCNICGKTFCKGYRMEDHLATHSTERPYECEICQKRFAKPASLNVHRKTHIGTRPHICNICGKRYSSQSNLGTHMKSHTGIKPYACGACPARFVHPRLLRIHQRVHTGEKPFPCPEPGCGRAFAKNVHLTVHRRVHSGERPYVCSELGCTRAFTTSGNLSAHKRVHHPQHQQPGGANVAVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00029577;
90% Identity: -
80% Identity: -