Basic Information

Insect: Pterostichus niger
Gene Symbol: -
Assembly: GCA_947425015.1
Location: OX380345.1:19550080-19552234[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00037 0.053 15.5 0.3 2 19 236 253 235 255 0.94

2 14 0.0081 1.1 11.3 1.8 1 23 290 312 290 312 0.95

3 14 0.0086 1.2 11.2 1.6 1 23 326 348 326 348 0.96

4 14 0.0012 0.16 14.0 1.8 1 23 365 387 365 387 0.97

5 14 0.00032 0.045 15.7 0.0 3 23 395 415 393 415 0.97

6 14 0.00088 0.12 14.3 1.7 3 23 422 442 421 442 0.99

7 14 0.012 1.7 10.7 0.4 1 23 451 473 451 473 0.94

8 14 0.0017 0.23 13.5 4.1 1 23 478 500 478 500 0.97

9 14 0.076 11 8.2 1.3 1 23 505 527 505 527 0.94

10 14 7.9e-06 0.0011 20.8 1.7 1 23 533 555 533 555 0.98

11 14 8.8e-07 0.00012 23.8 1.1 1 23 561 583 561 583 0.99

12 14 0.00075 0.11 14.6 3.9 1 23 589 613 589 613 0.98

13 14 9.4e-05 0.013 17.4 0.6 1 23 619 641 619 641 0.98

14 14 0.00059 0.083 14.9 9.5 1 23 647 669 647 669 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00037	0.053	15.5	0.3	2	19	236	253	235	255	0.94
2	14	0.0081	1.1	11.3	1.8	1	23	290	312	290	312	0.95
3	14	0.0086	1.2	11.2	1.6	1	23	326	348	326	348	0.96
4	14	0.0012	0.16	14.0	1.8	1	23	365	387	365	387	0.97
5	14	0.00032	0.045	15.7	0.0	3	23	395	415	393	415	0.97
6	14	0.00088	0.12	14.3	1.7	3	23	422	442	421	442	0.99
7	14	0.012	1.7	10.7	0.4	1	23	451	473	451	473	0.94
8	14	0.0017	0.23	13.5	4.1	1	23	478	500	478	500	0.97
9	14	0.076	11	8.2	1.3	1	23	505	527	505	527	0.94
10	14	7.9e-06	0.0011	20.8	1.7	1	23	533	555	533	555	0.98
11	14	8.8e-07	0.00012	23.8	1.1	1	23	561	583	561	583	0.99
12	14	0.00075	0.11	14.6	3.9	1	23	589	613	589	613	0.98
13	14	9.4e-05	0.013	17.4	0.6	1	23	619	641	619	641	0.98
14	14	0.00059	0.083	14.9	9.5	1	23	647	669	647	669	0.96

Sequence Information

Coding Sequence: ATGGATGATCAAATTGTTCTTCATTTACCAGATGATATACATAAATTATGCCGAACATGTATGTCAGTTACAGAAAATGTGTTGTGTCATGATATTGTACTTATTGATTCTGACAAAAAAACTTTAGCAGGTGAAATGATACAATTTTGCCTTGCAAATTCTCTAGAATTTGAAGACGGATTGCCTAAATCAATTTGTGATGATTGTGCAAGTACCTTAGAACTTTTTTACAACTTTAAGTATCAATGTGAACAAACGGAAGTTAATTTAAGAAAAATATTAAATTTACCTTCAAAAGATAAAGATTTAGACATAAAGCAGAATGAATTAGCAAGAAATAATTCAAGAATTTTAAATTGCATGGAACAGTCTAGTGCAGGTGTTGTGATTCATGAAGACAACTTAGTTCTAAATTATATTGATAACGCGGTAGAAATACCGGAAGAGAATGAAATAACAGTGGATACATTTCAAAAAATAAGAAATTGTAGTACTGTTGTAAAGTACATTACAGAGTTTTCAGATACACAACAAGATTGTGTTAATTCAAGTTCACCCAGTGACATTCTTGCATTAATTGAAGAAAGGAAGGAAACTGGAGATGATAACACAACAGAAGATGACATAGATACCTTTGTTGAAGAAAGAAACGAATCTATTATAAAACAAGAACTGTTTAGTGATGATGAAGATAGTAATGAAATCAGCTGCAAATTATGTGATGAAGTGTTTACAAGTTCATCAGAATTCCAAAATCATTCACAATTTTGTAAAAATAAAACTGAATTAGAAAACATATTAAAGTTGGAGAATGATTCTATAGACCAATTAGAATTGTACCAAGATGAAAGTAATGATTTGTGTCCCCATATGTGCACGATATGTGGAAGCAAATTTAAAACAAGACAGGGTAAAAATGCGCATATGACTGCTCATGAAAAGGCAGCAGAAGGCAGTGATAACAAAGATGCCCCGTATACATGTGATTTGTGTAATAAAATATTTATGACTGAACCAAAATTGTCAACACATTTTTATAAACATGCTACCCAGATACGAACAGAACTAGATTCTTGTGATACTAAGAAAAATTTTAATTGCAAAATTTGTTACGAAAATTTTGATACCAATCAAGATTTGAAAGAACACTCAAAAAGACATACAAAAACTGGAAAAGTAATTTGCGAAATTTGTAATATAGATTTTGTAGGAGAAGTTAATTTAATTAGACATTTAAGGAAGCATGGAGTACATATTTTACTATGCAAAATATGTTTGAAAAGATTTGATAATCTACTAAAATTAAAAGAACACATGAAAACACATCTAATTGAAAGTGTTAAAACTATTTTTAAGTGTGCTATTTGTAAAGAAGAATTTGCTGATATAGAGTGTTTAAAAGTTCACTCGATAGAACATTTAAATGATATATATGAATGTACAAAATGTAAGAAAACCTTTCACAATAGAGTTGCTTACGAAAATCACGAAAAACAACATATTGAGCCAAGATTTTTATGTTCATTGTGTGGAAAACAATATTTCTCCAGTGTAACACTAGCTTGTCACATTCGGGCGCACAACAATgaaaaaccatttatttgtccacattgcaaaaaaggtttttcgtcccgagcaacattgtcagttcacaaaagaattcattcagcatttaaaccatacgtttgttcatactgtggatatagttgtcgtcagagcggcgatttagcaatgcatattcggacccatactggtgacaaaccatataaatgtacttttccaaattgtgaacgaaaatttacaacatccagtcaacgaaaggaacattatagaagacatacaaatgaaagaaaccataaatgtccactttgcggaaaggcattcttggaatcgaaaactttgaaagttcatatgctagttcatactggagaaaaacctcattgttgtgaaatttgtggtaaaaagtttaggagaactcatcatttatcgacacatataaaaGGACATAAAGACCATTTTCTTGTCACAAATGTAAAATAA
Protein Sequence: MDDQIVLHLPDDIHKLCRTCMSVTENVLCHDIVLIDSDKKTLAGEMIQFCLANSLEFEDGLPKSICDDCASTLELFYNFKYQCEQTEVNLRKILNLPSKDKDLDIKQNELARNNSRILNCMEQSSAGVVIHEDNLVLNYIDNAVEIPEENEITVDTFQKIRNCSTVVKYITEFSDTQQDCVNSSSPSDILALIEERKETGDDNTTEDDIDTFVEERNESIIKQELFSDDEDSNEISCKLCDEVFTSSSEFQNHSQFCKNKTELENILKLENDSIDQLELYQDESNDLCPHMCTICGSKFKTRQGKNAHMTAHEKAAEGSDNKDAPYTCDLCNKIFMTEPKLSTHFYKHATQIRTELDSCDTKKNFNCKICYENFDTNQDLKEHSKRHTKTGKVICEICNIDFVGEVNLIRHLRKHGVHILLCKICLKRFDNLLKLKEHMKTHLIESVKTIFKCAICKEEFADIECLKVHSIEHLNDIYECTKCKKTFHNRVAYENHEKQHIEPRFLCSLCGKQYFSSVTLACHIRAHNNEKPFICPHCKKGFSSRATLSVHKRIHSAFKPYVCSYCGYSCRQSGDLAMHIRTHTGDKPYKCTFPNCERKFTTSSQRKEHYRRHTNERNHKCPLCGKAFLESKTLKVHMLVHTGEKPHCCEICGKKFRRTHHLSTHIKGHKDHFLVTNVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -