Basic Information

Insect: Pterostichus niger
Gene Symbol: -
Assembly: GCA_947425015.1
Location: OX380335.1:33483556-33485583[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.084 12 8.1 0.2 2 21 27 46 26 47 0.92

2 14 0.0012 0.17 13.9 1.6 1 21 56 76 56 77 0.94

3 14 0.0028 0.4 12.7 0.3 2 23 82 104 81 104 0.95

4 14 4.3e-06 0.00061 21.6 0.6 1 23 110 132 110 132 0.99

5 14 1.9e-05 0.0027 19.6 1.0 1 23 280 302 280 302 0.97

6 14 0.046 6.5 8.9 0.2 1 22 310 331 310 331 0.89

7 14 0.00029 0.042 15.8 3.0 1 20 374 393 374 396 0.93

8 14 0.012 1.7 10.8 0.2 1 23 401 424 401 424 0.96

9 14 3e-06 0.00042 22.1 0.4 1 23 430 452 430 452 0.98

10 14 0.00017 0.025 16.5 4.4 1 23 460 482 460 482 0.99

11 14 0.0072 1 11.5 0.5 3 23 490 510 488 510 0.97

12 14 0.0007 0.098 14.7 0.2 1 23 516 539 516 539 0.97

13 14 0.0019 0.26 13.3 0.3 1 23 551 573 551 573 0.94

14 14 0.00044 0.062 15.3 1.4 2 23 653 674 652 674 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.084	12	8.1	0.2	2	21	27	46	26	47	0.92
2	14	0.0012	0.17	13.9	1.6	1	21	56	76	56	77	0.94
3	14	0.0028	0.4	12.7	0.3	2	23	82	104	81	104	0.95
4	14	4.3e-06	0.00061	21.6	0.6	1	23	110	132	110	132	0.99
5	14	1.9e-05	0.0027	19.6	1.0	1	23	280	302	280	302	0.97
6	14	0.046	6.5	8.9	0.2	1	22	310	331	310	331	0.89
7	14	0.00029	0.042	15.8	3.0	1	20	374	393	374	396	0.93
8	14	0.012	1.7	10.8	0.2	1	23	401	424	401	424	0.96
9	14	3e-06	0.00042	22.1	0.4	1	23	430	452	430	452	0.98
10	14	0.00017	0.025	16.5	4.4	1	23	460	482	460	482	0.99
11	14	0.0072	1	11.5	0.5	3	23	490	510	488	510	0.97
12	14	0.0007	0.098	14.7	0.2	1	23	516	539	516	539	0.97
13	14	0.0019	0.26	13.3	0.3	1	23	551	573	551	573	0.94
14	14	0.00044	0.062	15.3	1.4	2	23	653	674	652	674	0.96

Sequence Information

Coding Sequence: ATGGCAGTAGAGGCTTTAAGGCAACTTGGTGGGATGTATCCAAATGTAGTTACTACTGAACAAACACTACCGATGCTGTCATGCAATATTTGCAGCATGAAATTTCTTACTACATCAGATCTTCGGGTACATACAATAACATGTAGGGCACAGTTTTTTCAAAATTACAAATGTTCAGTTTGTAATATAGTATTTAATAATGAGCAAAATTACAATAACCATAAATGTATTTTGATCAGACTTCCTTGTAAGTATTGCTACACATATTTTACAGCCAGAACTGAATTAGAGAAGCATATTGAAGTAAACCATAACACCCGTCGTCCTTATAAGTGTCAGTTTTGTAACATGGCATTTCCTAGATCTTCGAGTTTAGCAAATCATTTAAAAATCCACAATTATTTGCCAGGCAGAGCACTAATTACTAACGTTAATAAAGTAGAAGGACCTGATTCAACAAATATATCTACTTGGGCTTTTGAAAGTGTGTATGTTTCGGACAATGCAGTAAATCATTCATCTACAGACGCTTTATCGAATTGGAATTTGGGTTATGTAGCTAATCCTTTAATACAAACAGAAACAAATGATGAGTTAAATGTGGCTGCTCCAGAAATCATTGGCACAAATGATTTTGCTCAACAATCAATTAATGAAAATAACATCACAGAAAAAGATAATGATAAAAAATTGTGTGATAGCTTAGATTTTCAAATTCCAGTAAAAATAGAAGTAGTACCATATGCATCAGATATTGAAAAATGTTTAGACGAATCATTTCCCATAACAAGTATGCCGCAAATGGAAGTTACGATTGGGACAGACAGTAGAAAACCGCATGTGTGTTCAAACTGCGGAATGAATTTCAGTAGAGAAAAGGCATTAATTTCTCATATGAAATTACATTCAATCGATTTGCTATCGATATATGAATGTGAAAATTGCGAAGAAACATTTTCAGATGAAAACATTTTATTGCAACACAAAAAAACATGTGGTATAGTTTTAAATCAAACCTTTGAACAGAATTTAAATGTTCAAATACAAAACAAAAAGACAGAATCTTCTAAAAACGTAAGAATCGTAAATATTACAAAACCTCAAGTAAAGGTGGGTAAACATCCTTGTCCAGATTGTGATAAGCACTTTACAACAAAACAGAAAATGTTTAGACATTTATGGATTCATCGTAAAAAAACATTCACTTGTGAATTATGCGCTATGACATTTGCACTTCAAGCAGAATTAGACAAACATCGGTTATCTCAACATCCAGCTGATAGTCCTTATGTTTGTAACGAATGCGGGAAATGTTTTGCAAGTCGACAGGGACTTTGGGAACATGGAAGAGTTCATGGGGGAGGTTCTGCTGGTATGTTTACTTGTAACAAATGTAGCAAAACATTTGCTAGTCGTCAAGGTTTTTTAATTCATCATAGAACACACACAGATGAAAGACCTTATGGGTGTAGGTTTTGTTTAAAAGCATTCAGAGATGGGGGAACACTCAGAAAACATGAGAGAATCCATACTGGCTATAGACCATATGTTTGTCCAATTTGTTCACATGACTTTAATCAAAAAGTTGTATTGCGAGAACATGTACGATGGGTACATGCGGCTAATAAGACTGAAAATGATAATGGAATGTTTTTATGTCAAATTTGTAATGTTAGTGTTAGTGATAGAGAAGAACTATGTGCGCATATTGTAAAACACAGTGATTTATTAACGTTAGAGGCAAAAAATAATTTGAAAGATTCCAAGAACCAAAATAATACAAAAGTGAGTAATAGAGTTAGGAAAAAAAGTTTACAACCGAAAACTAATAATGCAGTTAAAATTGAAAGCATGTCACCAGAAAAAATTGTTAAACCTAAGGAAGAACAGCTGGATTTAAGTTCTGGAGATTATAGTTTGATTCAATATGATTTTACCCAAGATCAAAATAATGTTGAATGTGATTTATGTGGACATAAGTTTCCATCACAAAAAGACCTTATGACGCATGTTCATATACATATATAA
Protein Sequence: MAVEALRQLGGMYPNVVTTEQTLPMLSCNICSMKFLTTSDLRVHTITCRAQFFQNYKCSVCNIVFNNEQNYNNHKCILIRLPCKYCYTYFTARTELEKHIEVNHNTRRPYKCQFCNMAFPRSSSLANHLKIHNYLPGRALITNVNKVEGPDSTNISTWAFESVYVSDNAVNHSSTDALSNWNLGYVANPLIQTETNDELNVAAPEIIGTNDFAQQSINENNITEKDNDKKLCDSLDFQIPVKIEVVPYASDIEKCLDESFPITSMPQMEVTIGTDSRKPHVCSNCGMNFSREKALISHMKLHSIDLLSIYECENCEETFSDENILLQHKKTCGIVLNQTFEQNLNVQIQNKKTESSKNVRIVNITKPQVKVGKHPCPDCDKHFTTKQKMFRHLWIHRKKTFTCELCAMTFALQAELDKHRLSQHPADSPYVCNECGKCFASRQGLWEHGRVHGGGSAGMFTCNKCSKTFASRQGFLIHHRTHTDERPYGCRFCLKAFRDGGTLRKHERIHTGYRPYVCPICSHDFNQKVVLREHVRWVHAANKTENDNGMFLCQICNVSVSDREELCAHIVKHSDLLTLEAKNNLKDSKNQNNTKVSNRVRKKSLQPKTNNAVKIESMSPEKIVKPKEEQLDLSSGDYSLIQYDFTQDQNNVECDLCGHKFPSQKDLMTHVHIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -