Basic Information

Insect: Pterostichus niger
Gene Symbol: -
Assembly: GCA_947425015.1
Location: OX380338.1:37621445-37625011[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4e-05 0.0057 18.5 0.7 1 23 147 169 147 169 0.95

2 15 0.0019 0.27 13.3 1.1 3 23 177 197 176 197 0.99

3 15 7.9e-05 0.011 17.6 0.1 1 23 313 335 313 335 0.98

4 15 0.11 16 7.7 0.2 1 23 341 364 341 364 0.97

5 15 2.1e-05 0.0029 19.4 4.1 1 23 390 412 390 412 0.98

6 15 0.0023 0.32 13.0 0.1 1 23 427 449 427 449 0.95

7 15 0.0028 0.4 12.7 2.4 1 23 455 478 455 478 0.95

8 15 0.042 6 9.0 2.2 2 19 486 503 486 504 0.96

9 15 1.8e-05 0.0026 19.6 4.0 1 23 513 535 513 535 0.97

10 15 0.16 22 7.2 0.3 2 23 541 562 540 562 0.97

11 15 1.3e-05 0.0018 20.1 0.4 1 23 570 592 570 592 0.98

12 15 0.0056 0.79 11.8 0.2 3 23 600 620 598 620 0.97

13 15 0.00018 0.025 16.5 0.3 1 23 626 648 626 649 0.95

14 15 0.024 3.4 9.8 1.5 1 23 663 685 663 685 0.96

15 15 0.002 0.29 13.2 0.2 1 20 1049 1068 1049 1071 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4e-05	0.0057	18.5	0.7	1	23	147	169	147	169	0.95
2	15	0.0019	0.27	13.3	1.1	3	23	177	197	176	197	0.99
3	15	7.9e-05	0.011	17.6	0.1	1	23	313	335	313	335	0.98
4	15	0.11	16	7.7	0.2	1	23	341	364	341	364	0.97
5	15	2.1e-05	0.0029	19.4	4.1	1	23	390	412	390	412	0.98
6	15	0.0023	0.32	13.0	0.1	1	23	427	449	427	449	0.95
7	15	0.0028	0.4	12.7	2.4	1	23	455	478	455	478	0.95
8	15	0.042	6	9.0	2.2	2	19	486	503	486	504	0.96
9	15	1.8e-05	0.0026	19.6	4.0	1	23	513	535	513	535	0.97
10	15	0.16	22	7.2	0.3	2	23	541	562	540	562	0.97
11	15	1.3e-05	0.0018	20.1	0.4	1	23	570	592	570	592	0.98
12	15	0.0056	0.79	11.8	0.2	3	23	600	620	598	620	0.97
13	15	0.00018	0.025	16.5	0.3	1	23	626	648	626	649	0.95
14	15	0.024	3.4	9.8	1.5	1	23	663	685	663	685	0.96
15	15	0.002	0.29	13.2	0.2	1	20	1049	1068	1049	1071	0.93

Sequence Information

Coding Sequence: ATGGAGGAAGCAAGCTTCACTCTATGGCACGACGCTGGCAACAGCGTGGTGCACCGTGAAGAGGTGATCTGCGGCATCGACAATGGCTGTGCTATCATGCAGGCTGACGATGACGTCTGCGAGGAGGTTGTGGTCCAGCAGGACGTGGTGACGGAGACCATTGTCCCAGAGCAGGATGTCGGCGGCGCTGACAATGTGGTTTATCTCACGCCGGGGAATATGATTGTGATGAATCAGGCGGCGCCTGTTAGCTTTCAGGATAATTTTATGGAGTGTCAGGTAACGGAAGAAGTGATAACAGACGACTGGGTGCAAACAACTGGCGAAGAACGGGTAGAAATCCCCGTAGGGGAAGTCGGCGCCGAACAACAAATCGAGTACGACGACACGGAGGTGCCGCTCCCAACTGACCAAGACGAGTACACAGCTTCCCGACCGTACCCATGCGACTTCTGCAGTCGACGCTTCCGCAAGAAGGCGAACCTGATGAACCACATGGTGGCGCATCAAACAGACCGGCCGCACGGCTGCAATCTCTGCGGTGCCCGCTACATCCGCAAATGCGACCTTATGAACCACCTTAAAATACATGCTTATGTCCCTGATCCAGATGCCCTAGACGAGGAGGAACTTCCGCCCCTCTCCGCGGACTCCGACGCGGAGAAGACAACCACAACAAAAAAGAAAAAGACCGGCAAAAAGAGAAAACAACTTCCCTCCCCACCTAAACCTAAAATCAAACAAGAACAAGTTGACTCTGACGAACGGTACGAAGTCCCGTCTCGATCGTACAATTACGTCGAGGAAGACGTCAGATTATTAACAGAAATGGAGAACCATGTCAACTCTACCAGAAACGATAGCTTCAGTAGTTATAATGATGTTGATGCATCGATGGTAGAAGCACGATACCCGATCTTAGACCCGCGAAAACCTTTCGTTTGTCAACACTGCGGCGTTGCCTTCGCTAGGGAAAAGGCGCTAGCTTCTCATGCGAGAATACACGCTGGAGACTCACCATTCGAATGCGAAACTTGCAACGAAATGTTCTGGGATGTGACAGTTCTTCGTGAACACGTCCGCACGAAACATGGCGGAATGGCCAACGATTCTGACTATGAGGACATTGACGATGATGATTATGTTGATGATTCGAAATACGGTGATTTTTACTGTAAAGTTTGCGGAATGCGATTCCATCGCACTGATCTTCTCCGACGACATATGAGGAACCACGATGATGTCAAAGAAGAATTTAATGATGAAACAGAATACGCTCATGTTTGTAATGTATGCGGACAAAGCTTCAACGAAGCTCTAGATCTTCTTGCTCATGCTGAAAGTCATGCTAGACAGCTAGGGCACCGATGTATGTTGTGTGGGGAATGTTTTACTGATGAATCTACGATGGCGAATCACGTCATGCAACGACACGGGAAAAATATGCCGCCTAATACTTGTATGCTCTGTGGAAAAACTTGTAAAGATCGCCGAACGTTACTCAAACATTCATGGGATCATTCCCGAGAAAAACTCTTCTCCTGTTCAAAATGTGGCAAGAGTTTTCACAATAAAGCTAGACTAAAACGACACATGGTGTCGCATAGAAACAAAGCAGTGCAGTGTGACGTTTGCGGAGATGATTTCCCCGATGGAAGGTCTCTGATGAATCACAGGCATAGTCATTCGAATATTTCTGGCAgacagtttccgtgtcgggaatgtggaaagactttcggcagtcgaagttcccaacaaattcacattcgaatacatactggtgaacgaccgtatggatgcagattttgctggaaagccttcgctgatggtggaactctaaggaaacatgagaggattcatacaggggagaagccctacgcttgtgctgtgtgccccagagcgttcaatcaacgcgttgtgctgcgagagcacatTCGTTCACATCATTCCGGACCGGATCCTCAATATAGTCACACCATGACGCCATATTGCTGCGCCGTGTGCAATGATATGTTCTCCACGTCTCAAGATTTGATCATTCATTTGATCCACCACTGTGATCTGAATACTGCCATGAAGCGGCAACCTCAAGTTGGGCCAAGAAAATACAAACGACGACGAAAACTCAAACCTCACGAGCTAGAGCTCATCTCAAACCGAGTTGATAATGACCATGATGTATATTCCGATTCCGATGATAACGGAAAAACAACAACTAAAAGAAAAAGCCCGAAAAAAATTAAACCAACACCTACAAGTAGTAATAATAAAAGTAATTTAGAAAAAGAATATGAAACTGTGTTTCAAAGTTTTGAATCTGCGATACAAAATATTAATTCTCTCGTCAATTCCAAACCAGCGACTACTCGAGGAAGGAAAAAGATTAAACCAACTGAGTCTCAATTGGCTTCGATGCCTTCGAGACCAAAAATGATCCACACCCAAAAAACCAGAGTTCCCATTGATGCTCAAGGTGACGGGAAAGGCCGACACAAAACCAAGACATTGATCACTCGGACGACACCTGCCGAGCATGTTGTCAAAGAGAAAATCACATCCTCCGGTGAGAGAAATCGACCACGGACTAAAAATGTCAGTTATCACGTGCTACAAGCAGAAAAATTACCCTTAGCCACTTTTGCAGATGAAGATGACAGGGAAGGCCAGCAGGAGGACCTAGACCAGGAAAACACGAACCCTGATGAAGAAGAGTACGAAACAATAATGATTAAACCAGACCCAGACGCACCCAAAAATCATGAACTCGAAATGGAGTACCAAACGGTGGAAACAGAAATCCCTGATGTGGCCAACGAGGAAACAGTCCTCGCACAGGTTGAGGATCCTCCAGAGCAGAACTGCTCGCAGCTGACAGTGGTCAACATGATCAAAGTTACCAAAAACGTAGGCAAACGTACCAATAGCTTAACGCCGGGCCGGCACATCATAGGCCCGGGCAACAAAGTCATCCGAATCGTCAAAGGCGGTATGTTAGTTAGTAATAAAATTAAAAAAGAACCTGACTTGCTTGTTCCAGATCTGGACAACAGCAAGGCCTTGTTAAAACATGTGAAACAGGAAGTAGTTGAACCGAGTCCGTTGCATGAGTTGGCAGAACTGTCAATGCAACACGCGCAAAATCAGTTCCGATGCGAGATGTGCAGTGCGACATTTAATGATCGCTCGCAGCTCTTGATGCATGTTCCGGTTCATATCTGA
Protein Sequence: MEEASFTLWHDAGNSVVHREEVICGIDNGCAIMQADDDVCEEVVVQQDVVTETIVPEQDVGGADNVVYLTPGNMIVMNQAAPVSFQDNFMECQVTEEVITDDWVQTTGEERVEIPVGEVGAEQQIEYDDTEVPLPTDQDEYTASRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGARYIRKCDLMNHLKIHAYVPDPDALDEEELPPLSADSDAEKTTTTKKKKTGKKRKQLPSPPKPKIKQEQVDSDERYEVPSRSYNYVEEDVRLLTEMENHVNSTRNDSFSSYNDVDASMVEARYPILDPRKPFVCQHCGVAFAREKALASHARIHAGDSPFECETCNEMFWDVTVLREHVRTKHGGMANDSDYEDIDDDDYVDDSKYGDFYCKVCGMRFHRTDLLRRHMRNHDDVKEEFNDETEYAHVCNVCGQSFNEALDLLAHAESHARQLGHRCMLCGECFTDESTMANHVMQRHGKNMPPNTCMLCGKTCKDRRTLLKHSWDHSREKLFSCSKCGKSFHNKARLKRHMVSHRNKAVQCDVCGDDFPDGRSLMNHRHSHSNISGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPQYSHTMTPYCCAVCNDMFSTSQDLIIHLIHHCDLNTAMKRQPQVGPRKYKRRRKLKPHELELISNRVDNDHDVYSDSDDNGKTTTKRKSPKKIKPTPTSSNNKSNLEKEYETVFQSFESAIQNINSLVNSKPATTRGRKKIKPTESQLASMPSRPKMIHTQKTRVPIDAQGDGKGRHKTKTLITRTTPAEHVVKEKITSSGERNRPRTKNVSYHVLQAEKLPLATFADEDDREGQQEDLDQENTNPDEEEYETIMIKPDPDAPKNHELEMEYQTVETEIPDVANEETVLAQVEDPPEQNCSQLTVVNMIKVTKNVGKRTNSLTPGRHIIGPGNKVIRIVKGGMLVSNKIKKEPDLLVPDLDNSKALLKHVKQEVVEPSPLHELAELSMQHAQNQFRCEMCSATFNDRSQLLMHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01104958;
90% Identity: iTF_01226049;
80% Identity: -