Pnig002411.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380344.1:34818053-34824902[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.1e-05 0.0072 18.2 0.7 3 23 207 227 205 227 0.97 2 18 0.00035 0.05 15.6 0.6 1 23 233 255 233 255 0.95 3 18 3.1e-05 0.0044 18.9 1.9 2 23 263 284 263 284 0.96 4 18 0.82 1.2e+02 5.0 0.0 1 13 288 300 288 302 0.90 5 18 3.1e-05 0.0044 18.9 5.1 1 23 466 488 466 488 0.97 6 18 0.00078 0.11 14.5 2.6 1 23 494 516 494 516 0.97 7 18 0.00014 0.02 16.9 3.1 1 23 522 544 522 544 0.97 8 18 0.12 17 7.6 0.2 1 12 550 561 550 563 0.89 9 18 7.5e-05 0.011 17.7 3.5 1 23 729 751 729 751 0.95 10 18 0.0036 0.51 12.4 1.3 1 23 757 779 757 779 0.96 11 18 2.5e-06 0.00035 22.3 1.3 1 23 785 807 785 807 0.98 12 18 0.00011 0.015 17.2 2.3 1 23 813 835 813 835 0.97 13 18 3.6e-05 0.0051 18.7 4.9 1 23 841 863 841 863 0.98 14 18 0.0063 0.89 11.6 1.3 1 23 868 890 868 890 0.97 15 18 5.3e-06 0.00074 21.3 2.7 2 23 896 917 895 917 0.97 16 18 6.9e-05 0.0098 17.8 1.5 2 23 924 945 923 945 0.97 17 18 0.27 38 6.5 1.1 1 20 1148 1167 1148 1169 0.94 18 18 0.00022 0.031 16.2 2.2 2 23 1177 1198 1176 1198 0.97
Sequence Information
- Coding Sequence
- ATGTTCAGTTTTCCGAATTTGTGTCGATTGTGTATTTCAACAGAAAATCTGAAATTCAATATAAAATCAGCTGATTCAAATAACATCACTGTCCATGACAAGCTAAAATGGCTCGAACCAAATATAATACAACCTGATGATCATTTGCCAATTTTCATTTGTGAAACATGTCATGAAAAACTAAATCTTGCTTTTATATTCAAAGAACAATGTTTGCAGACATATGAAAAACTAAAACATTATGTTCAGCATGTTCGGGAAGTACCTAAAGAAGAGGTGAAGGAAGTGAAAGAAGAATTATTAGAAGATATTTGTGATTCCTTGGATAATTCGAAATCAATTTTTTTTTCTGATATTGATAACGATTCATCAGACATAAATTTTTGTAAAACTGAAATAAAGGAAAATGAATCTGATGTATCAAATTGTTCATTTATTAACGAAATAGAAGTTGAACAATCTACAAATAAGAAAAATCGTAAATATCGTAAAAGAAAAATAAAAACAAATAAACTTGGAGGTATAAGTAGTGAAGATAATCCTTACGAATATACTTTACAAAAAGAAGATTGTGTGAAGGTAGTATACACCAGCAATTTTAGAGAAAAAATATTTGGTTGTAATAATTGCCAAAAATCTTTTACTGGTTATTCAGCTTTACGTCGCCACTTATTAATTCATATGAAACAGAGAGACTTTAAATGTGATATTTGTGGTATAAAAACTTTTACAAAAAGTGCCTTACAATCTCACGAATCATCACATAAGAAAGCTGCTGGATCAGAAGTTTGTGATATTTGTGGAAAATCATATAAAAGTAAAGATAGTTTACGAGAACATTCTCACACCCATAATAAAAAATATATGTGTGAAATATGCGGCAACAAATTTGCTAATAATATGTTAGAAGAGACAAGTATTCCTTTATCAATATGTTTAAAATGTTGCGAGAATATTCGACAAGCTTATGACTTTAAAAAGCAATGCATCTATTCGTTAAACTACTGGAATCAGCAATTAGATTTTCCAGATGTTAAAGCAAAAACTTTATTTTTAAAAGATGGAAGAGAAATACCTTTAAATAATATAGAGGATGCAAATAGCAATTCAAGTTCATCGTCAGATTTTAATATGCCATTGAAACCAAAACTATCAGACAGTACAATAACAAACTCCACAACTCAACAAAAAAACAAGAGAGAGGAAAATAATGACAGTCCAGAAGAAACAGATGAACAAGATTCAGATGCGGAAGATGAACCGAATACAGGAGAAAATAATCAAAATACTGATAATTCCGTTTTATTACCAAAATTAAAGCGTGCACCAAAATCAACAACGTTTCCATCAACAATCGATCGTACAACTTACATTTTAGATAAAAAGAAACATATATTTTTTTGTAAAACATGCAATAAGCATTTTGCTAATCGCGATTCCTTAAAAAATCACATGCTTCGACATACTGGTATCAAGCCTTTTTCCTGTAAACTTTGCGATAAAAAAACTTTCACTTATACTTCACTAAAATCTCACATGTTAGTTCACGCAAAAGAATTGCCATTTTCTTGCAAAGTTTGTAATAAATCATTTAAAGATAAAAATCGATTAGGTCAGCATATGAAATTTCATTCTAAACATCGGCCGCATATGTGTGATATATGCGGCAAAAAATTTGTACAACATTTGTTAGATGAGCCTTATTTACCTGCGTCAATTTGTGCAAACTGTTGCAATCAATTAAAACAGTCGTACGAATTTAAAAAACAGTGTATTAATTCGACAAATTTCTGGACACAGCAGTTACAAATATTTAATCAAGAATCTCTCTTTTTGAAAAAAGAGACATTAGTTACAAATGAAATTTGTGACGTTAATTCATCCAGTATTGCTGCAAAACAAAATGTAACCATTAAAATTGAATATCCAATAAAAAGACTTAAATCTGAACTTGTTAAACAAAAAAGTAATAATGATGAAGTGCTTTTAAATACATGCAGTTCTGATAGCAACGAAGAGGAAGATTCTCAATTAAATAATGAAACTATAGAAGAAAATGATTCACATTTGACAAATAGTATATCAAAGCGAAAATTAAATCTGAATCAAACCCCAAAATCAAATGTATTATTTCCTGCATCTATAGATCGCTCCACTTTTGTTACCGATAAAAAGAACAATATTTTTCTATGTAAGACGTGCAATAAGCATTTTGCCAATAATTATTCTCTGAAAGCTCATTTATTAAGACACAATGGTAAAAAACCTTTCTCATGCAATATTTGTAATAAAAAGACATTCACCTATGCAGATTTAAAATCACATAGTCTCGTTCACGATAATCATTTGCCATTTAGTTGCAATATTTGTGAAAAATCATTTAGAAATAAAGCTAGATTAGAAACGCATATGTTGCGTCATGAAGAAAATCGTCCTCATATGTGTGAAATTTGCGGGAAAAGTTACGTGAGAGATTGCAATCTTCGTGTTCATTTATTGAGTCACAGCGATGAAAAAAAATACCAATGCAATATTTGTCAAAAACAATTTAAAATGTGTAGTTCGCTAAAAAATCATATGGATCGCCATATGAAACGTACTTACAAATGCAAAATATGTGACAAGGTGTATGAATCAACAGGTGGATATTACTTTcacttgcgaacacataacgaaaaaaccattaaatgtaacttatgtgataagacattttactttaaaagtaaactcaagatccacatgaaatctcatactaatgaagtgtctataacgtgtccaatttgtaaaaaacagtttaccacgaatactgttcttaaacatcatcttttagttcacaccggtgaacgaccgtatATACTAGAAGAAGACAATAAAACTTCATTTCGAATATGTCCAAGTTGCTCTAAAAAGCTAAAACAAACTTACGATTTCAAAAAGCAATGTGCTTCTTCATATGAATATTGGCAGTTGCACTTTCTTACGAGTGAAACTATTATCAAAAAAGAACTCAACTTGGAGGAAGCAAGCTATAAATCTGAAGAAAATAAAACACTTCCAAGAAAAAGAGGAAGACCGAAAAAAGTGACTATTGAGAATCCATTAATGGTTACTAGCCTTAAAAACAAATTAGGATCCGTGTTGAAAACGAACAACAGCGAACCTAATCCTAATATTCTTAATCTTAAGAATAAGTTAACAACACTTTTAAAACCAGAAACTGAAATTAAAAAAGAGATCTCTAACAAAGTTGCTGTTCCAATACAGTTAAGTTTTACTAGTTTAAAAAGTAAATTAGGTAATGCATTAAAGATTGCTGCAATTCCAAACTTTCCACAAGAAAAAGTGTCTTCTGTTCTTAAACCTATAACGAAAAAACAAGCACAACAAAGATATTTTGTTATCAATAAATCGTTTTATATAATTGACATAAAGCGTGGCAGATTCTACTGTAAATCATGTAATAAATATTTCCTAAATTTGAAATCTTTAAAGTTACATATTATACAAGATTTAAGAATTAAAAATGTTCCATGTAGAATATGCAGGAAACGATTTTTCTCTCGTAGAGAATTAAAATCACATATGCAGAAGCATAAATAA
- Protein Sequence
- MFSFPNLCRLCISTENLKFNIKSADSNNITVHDKLKWLEPNIIQPDDHLPIFICETCHEKLNLAFIFKEQCLQTYEKLKHYVQHVREVPKEEVKEVKEELLEDICDSLDNSKSIFFSDIDNDSSDINFCKTEIKENESDVSNCSFINEIEVEQSTNKKNRKYRKRKIKTNKLGGISSEDNPYEYTLQKEDCVKVVYTSNFREKIFGCNNCQKSFTGYSALRRHLLIHMKQRDFKCDICGIKTFTKSALQSHESSHKKAAGSEVCDICGKSYKSKDSLREHSHTHNKKYMCEICGNKFANNMLEETSIPLSICLKCCENIRQAYDFKKQCIYSLNYWNQQLDFPDVKAKTLFLKDGREIPLNNIEDANSNSSSSSDFNMPLKPKLSDSTITNSTTQQKNKREENNDSPEETDEQDSDAEDEPNTGENNQNTDNSVLLPKLKRAPKSTTFPSTIDRTTYILDKKKHIFFCKTCNKHFANRDSLKNHMLRHTGIKPFSCKLCDKKTFTYTSLKSHMLVHAKELPFSCKVCNKSFKDKNRLGQHMKFHSKHRPHMCDICGKKFVQHLLDEPYLPASICANCCNQLKQSYEFKKQCINSTNFWTQQLQIFNQESLFLKKETLVTNEICDVNSSSIAAKQNVTIKIEYPIKRLKSELVKQKSNNDEVLLNTCSSDSNEEEDSQLNNETIEENDSHLTNSISKRKLNLNQTPKSNVLFPASIDRSTFVTDKKNNIFLCKTCNKHFANNYSLKAHLLRHNGKKPFSCNICNKKTFTYADLKSHSLVHDNHLPFSCNICEKSFRNKARLETHMLRHEENRPHMCEICGKSYVRDCNLRVHLLSHSDEKKYQCNICQKQFKMCSSLKNHMDRHMKRTYKCKICDKVYESTGGYYFHLRTHNEKTIKCNLCDKTFYFKSKLKIHMKSHTNEVSITCPICKKQFTTNTVLKHHLLVHTGERPYILEEDNKTSFRICPSCSKKLKQTYDFKKQCASSYEYWQLHFLTSETIIKKELNLEEASYKSEENKTLPRKRGRPKKVTIENPLMVTSLKNKLGSVLKTNNSEPNPNILNLKNKLTTLLKPETEIKKEISNKVAVPIQLSFTSLKSKLGNALKIAAIPNFPQEKVSSVLKPITKKQAQQRYFVINKSFYIIDIKRGRFYCKSCNKYFLNLKSLKLHIIQDLRIKNVPCRICRKRFFSRRELKSHMQKHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -