Basic Information

Insect: Pterostichus niger
Gene Symbol: Gnf1
Assembly: GCA_947425015.1
Location: OX380345.1:2145897-2156735[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0052 0.74 11.9 1.9 2 23 159 180 159 180 0.98

2 15 0.00015 0.022 16.7 2.8 2 23 187 208 186 208 0.97

3 15 0.00031 0.044 15.8 6.1 1 23 217 239 217 239 0.97

4 15 9.6e-06 0.0014 20.5 6.4 1 23 299 321 299 321 0.97

5 15 0.0099 1.4 11.0 1.7 3 23 345 366 343 366 0.95

6 15 0.0018 0.26 13.3 8.7 1 23 440 462 440 462 0.95

7 15 0.0017 0.24 13.4 1.8 1 23 468 491 468 491 0.95

8 15 8.5e-06 0.0012 20.7 0.9 1 23 496 518 496 518 0.98

9 15 9.1e-06 0.0013 20.6 3.3 1 23 530 552 530 552 0.97

10 15 1.7e-06 0.00023 22.9 0.4 1 23 559 581 559 581 0.97

11 15 7.5e-05 0.011 17.7 1.6 3 23 593 613 591 613 0.92

12 15 0.001 0.14 14.1 4.1 1 23 619 641 619 641 0.99

13 15 3.1e-05 0.0044 18.9 1.8 1 23 647 669 647 669 0.96

14 15 8.4e-07 0.00012 23.8 0.3 1 23 675 697 675 697 0.99

15 15 0.00061 0.086 14.8 0.1 1 23 703 727 703 727 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0052	0.74	11.9	1.9	2	23	159	180	159	180	0.98
2	15	0.00015	0.022	16.7	2.8	2	23	187	208	186	208	0.97
3	15	0.00031	0.044	15.8	6.1	1	23	217	239	217	239	0.97
4	15	9.6e-06	0.0014	20.5	6.4	1	23	299	321	299	321	0.97
5	15	0.0099	1.4	11.0	1.7	3	23	345	366	343	366	0.95
6	15	0.0018	0.26	13.3	8.7	1	23	440	462	440	462	0.95
7	15	0.0017	0.24	13.4	1.8	1	23	468	491	468	491	0.95
8	15	8.5e-06	0.0012	20.7	0.9	1	23	496	518	496	518	0.98
9	15	9.1e-06	0.0013	20.6	3.3	1	23	530	552	530	552	0.97
10	15	1.7e-06	0.00023	22.9	0.4	1	23	559	581	559	581	0.97
11	15	7.5e-05	0.011	17.7	1.6	3	23	593	613	591	613	0.92
12	15	0.001	0.14	14.1	4.1	1	23	619	641	619	641	0.99
13	15	3.1e-05	0.0044	18.9	1.8	1	23	647	669	647	669	0.96
14	15	8.4e-07	0.00012	23.8	0.3	1	23	675	697	675	697	0.99
15	15	0.00061	0.086	14.8	0.1	1	23	703	727	703	727	0.92

Sequence Information

Coding Sequence: ATGATTAACAAAGATAATGCATTGTCCCTGGACAAGATATGTCGTTCCTGTATGACCGAAGGTAATCAAATGAGATCGGTATACGATACCAATACAGATTCAGTGCAGCTTGCGGAAATGATAATGGCTTGTGCTTCAGTACAGGTTGTGTCAGGAGATGGTTTACCTGGCTTGCTTTGTCCAAAATGTGAAGAGCAACTAAACATAGCATATCTGTTCAAGCAACAGTGTGAGCGAACAGATACTACACTTAGAGAATACACAAATCATGCTATATCTGGAACCATAAAAGAGGAATCAGAATCTCTAGATATTGTTGTAAAACCAGATATTGACGTGTTGGAGATATATGAAAATGATAATGATGGAGGTCGGGATGATGACGATGATGATGATGACCAATACTCCGGGTCGGAGAGTGTACATAGTAACTACTCATCTACTGTTAGAAAAAAGAAACCTGTGAAAAATCGACAGTGTAGATTTTGTAACAAGATGCTGTCAACAAAAGATGGTCTTAGACTACACGAAAGACGCCACACTGGTGAGAAATTAAAATCCTGCCCAGTGTGTCATGCAACATTCGCCAAATCCAATCACTTGATTAGACATATGTCAATGCACAATAAACCAACAGATGAATACAAGCACACATGTCAAGAATGTGGCATGGGTTTTACGAAGGCGTCTCATCTGCACAAGCACCGGCGAGAGCACAAGAACACGGATGATACCGTTGCCGATGGTGCAGGAGGTGAGGGTTGTTCACAGCCCGATGAAGCTACTGCCACCGTCAAAAGCGAAGTGTATAGCGACAATGAAGCCGGAACCACCTCGACCAGTTCGCGGCCCAAGCTAAGACCTAAAAGAGAACCTCTGGACATAGATAAACTTCATTCTTGTAAGATTTGTTTGAAATCGTTTACAAAATCTAGCCACCTAAACCGCCACATGCTGACGCACGGTGTATCACCGGACAAATCATCGGCGAAAGAGAAGAGCACGGAGCCCAAGGAAAAGAAGTATATGGCTTGCGAATTTTGCGATCGCAAATTTGTGTATCGCAAGAGCTTTTTACACCATATCCAACTAGAGCATCAGATTTCTGAAGACAGCGATACACCGCTTAGCGAGTACGCTACCATTATCACCAAGTCGAAGGTTGATGGCTCTACACTTAACTCCTCAACTGGTAATATTGAAAATGGTGGTAGTGGAGGTGGCGATCAAGCCGGTGGTGATGGAACTGAACGGCCATTAGGTGTAGGGGAAGATGATTTCGAGGAGTTCATGCGACAGGAAGAAGCGAAGAAGGTGCATGCATGCCACGTGTGCAACCACAAATTTACACGAGCCAATCATTTGACGCGTCACATGACACTACATCGCGCTGTGCTTATACACAAATGTGATCGCTGCGAGAAAGCCTTCATGACACCTGAACATCTCGCCACCCACGTCCAGGAATATCATGTAGACCGACCGTACGTTTGTTCGCTGTGCAATAAACCATTTAGCCGAGGCGAACACCTGATTCGGCATCTGAAGGTCCACGACAAAGAAGCAGGCAACGGAGGTTCAGATGAGCACAAATGCTCAATTTGTGAAAAAGTGTTCGCACGTTCTGATCATTTAGCGCGCCATACGAAACTGCATCTAGCGCAGGACAAACGGCATGTTTGCGGCGAATGCGGCAAAGCATTCAACCGCCTCGACAACTTGCGCACCCATGCTCGAATTCACACGGGCGTGCGGGACCCGCAACGGTTACATCTCTGTATCTACTGTGGTAAAGAATTCAATAATTCCAGTAATATGATCGTACACATGCGCCGACACACCGGCGAACGACCTTACAAGTGCGCGCAGTGCGGAAAGGGCTTCCCGCGCTCGCACGATCTCAAGTGCCACGAACGCACTCATAGTGGTGAGAAGCCTTACCTATGTACCCTTTGCGGAAAATCATTCAATAAGAGTAACAAACTACTACGTCATACAAGAGTGCATACTGGGGAGAGGCCCTATGTGTGTTCACTTTGTGGACGCGCGTTCACTCAGTCTAACGATCTAGCGCTCCATATGCGGCGCCACACGGGTTCCAGGCCGTACGCATGTGGGATGTGTCCGGCACGATTCATTCAATCAGGACAACTAAAAGCTCATCGTCGCTCTCAAGGGCATTGGTTGGAGACTCCACCAGAGCTAAAAGGTGCGCATCGTGTCACGCCTGTTACGCCGTTAGTTAATCCTCCGCCGATTAAGTTCAAAACGCGAGTGCAACGTATTAAGGAGGAACCATCGATATTGGGGCATACTATTGGAGTGGGTGTTAATTTGGTTGGAGTGGTAGCAGCAGCAGCTGCGGCGGCTGCAGCTGCAGCGTCCAAAGAAAGCGGTGAACATAGCACGGCTGGTGACGCAGTTGTCTCGGCAGATAGCGGTGCTTCACCGTTCTTTGTGCATGGTCGGGACCAACAACAACAACAACAACAGCAGCAGCAGCATCAAGCCAAGGACTTAAAGATGGAGGAGGTACATAATTTTAGCATCACCAACCTCAGTCGAGAGACGAATGCGCCCGGCCCCGCTGGTTTCCCGCAACCTGCGGGGCCCAGCGTTGTTGAGCCGGGCACTTCTTTCTCTAATAGCATTGCAATGACGTCGAGTACTTTTGCTGACATTAGGTCTTACTTTACCAGTCTTTCAAAGAAACCAGTGCCAACAAAAACAGAAACTCCAAGTGGGAATACTTCGAAGAAACGGTCTATTACAGACTTGAATACTAGTGATGATATTGTGCCAGATACACCGGAAAATAATGTTAAGAAACCCAACAAGAAAAATGATAAATCGCAGTCTAAACGACGAAGAATAGTGACTGTAAGTTCAGACTCTGAAACAGAAAATGGTAGAAGCAAAGGAGTACCTTCAAAAGCATCACAAGAGATAACCTCTACATCTAGCAGGAAAACGAAAAAAGAAATTGAAGCTCATAGAACCACTAAACCTAACCAAAATAAAACTAAAGATAAAGATATTGAAAAACCTAAAAATATTAACAAAAAGAAAATAAATCCTTTGGAGGCATTTGGTAGCGAACCTGTTGCACAAGTCAAAATTAAGAAAATTCAACAGTCTGAATTGAATATTCATGAAGATGATGATTTTGACAAGACACTGATAGATTTAGATGAAGATGACTTATTTCAAAAGGCAGAAGTCAATACCACCAAGAAAGAAAAACGACCACCTGTTGATATATCATCAGTTTCATCGGATGATTCGAAACGAGCATCTACTAAGAAGAAAGAAGAACGACATGTTAATAAATCATCAGTTTCATCGGATGATTCCAAAAATACACCTTCTAAAAAGAAAGAAAGTTCTCTTGCGAAAGAGAAGACACCATCACGCAAGCGAAAATCTAATGAAGATGAAGATGATCCTACCGTGGATCCAGATCAAGATAGGTTTGAGAAGAAGCGTTATTCAGCTATGTTATACCAAAAATATTTGAACAGAAGTGGTCCAGCACATTTAGGGGCAAAATGGATTCCCAAAGGTAAACCGAATTGTTTGAATGGATTATGCTTCATAATAACTGGAGTTTTGGATTCGATGCAACGTGAAGATGCACAAACTCTCATTGTGGAACATGGTGGCCGGTGCACCCAAAGTGTTTCAGGTAAAGTGAATTATATGGTTTTGGGCGACGATGCTGGTCCATCTAAGGTGGAGAAAGCGAGAAAAATAGGAGTTAAAACGATATCAGAAGATGATTTAATTGATTTAATATGTTTAAAGTCTGGCATTAAAAATCAAAATAAAAGCGAACCAAGCAGTGAGACTAATTCATCACAAAAAACGTCTACTTCATCACCGGCAGCTACTCAAGTAAAAGAAGAAAAATCTAAAAGGTCTATTAAACAAGAGAGTAACAAAACACCAGTAAAACCCGAAAAAACTAAACTTCCAGTTAAAAAAGAACAGATTTCAGATGATGACGATGAAATTCCATCTACAACTGTTAAACAAGAAATTGATAAAGTTACAATAGTTCCAAAAACTATAAACAATAAAAAGAAAACAACACCAGCTCCTGCAAAACCAGCAGCTAACGATAAGCAAATAGACATTGGTAATTTAGCGTGGGTGGACAGATACAAACCGACCGATATTAGTCAGATCATTGGACAGCAAGGGGACCGTAGTAATATGAACAAGTTAATTAAGTGGCTTCAAAATTGGCAGAAGAATCGAGCTCGCGAAATTTCTGGAAAAGGAATTCCAAAACCATCTCCATGGGCAAAGGACGACGACGGCTCATACTTCCGCGCTGCTTTACTTAGTGGCCCACCTGGAGTGGGCAAGACCACTACAGCCACGCTGGTGTGCAAGCACCTGGGTCTGGATACTGTGGAGTTCAACGCTTCAGACACGCGCAATAAACGCATGGTGCATGCCGAGGTATCGCATATTCTCAGCACCACGTCCTTGGCGGGGTACGCTGCGGATGGTGCAGCTCCGACCCGCCAGCACGCGCTGCTCATGGACGAGGTGGACGGCATGTCAGGCAACGAGGACCGCGGCGGCATTCAAGAGCTCATTGGTCTCATCAAAACGTCCAACATTCCGATCATATGCATGTGTAATGATCGACAGCATCCCAAAATTAGGACTCTTGCAAATTATTGTTTTGATTTGAGGTTTAGCAAACCTAGAGTTGAACAGATTCGGGGATCAATGATGTCAATTTGTTTCAAAGAAAAACTACCAATTAAAGGCGACGCTGTAGCCCAGATCATCCAAGGAACGGGCCAAGACGTTCGACAAACGTTAAACCAGTTAGCGCTGCTGGCGGCCGGTTCCGGCGGTGATGCCGATCAGGTCACCCAACAAGCTCGCGCTGCCCAGAAAGATGTCAAGCTGGGTCCGTGGGAAGTTGTACGCAAAGTCTTCTCCGAGGAGGAACATAAAACCATGTCATTTATCGACCACGGAAAGCTGTTTTTCTACGATTATAGTATTGGGCCTCTCTTTGTTCAGGAAAACTATTTGAAGGTAGTGCCACACTGTCCGAAATCTCAGCATTTGCAGCGTTTCGCACAAGCTGCTGATGCCATCAGCATGGGTGACGTGGTTGACGCTCGCATTCGTTCCACCCAGAGCTGGGGCTTGTTGGACGTGCAGGCTATGTACGCATCAGTATTACCCGGCCATTATTTGCGTGGCCACATCGGGGGCCAGATCGACTTTCCTGCGTGGCTTGGGAAGAATTCCAGAGCTACTAAGTTTAAGCGATTACTTAGTGAGATTCATGGGCACACGAGGATGAGTACGTCATGCGACCGTACGTCTGTGTCATTGGACCTGGTGCGACCGTTACGGGATGCCGTGGCGGGTCCATTACTTCGCGATGGTGCAGAAGGTGTCCCGGCAGCGATGGACACTATGCGTACTTATAGTCTACTGCGCGAGGATCTCACCAGCTTGGTGGAGCTGGCGCATTGGCCCCGCACTCGCGATCCTTTTGAACAAGTTGATGCCAAGGTGAAAGCTGCGTTTACGCGCGCCTACAATAAGGAAACTCCGACGTTGCCGTACGCTGCTCCCGCCGCCGTTCCTGTAAAGAAGCGAGCGGCTGCTGCAGCAGACGACATTTATGGCGAAGACGACGACGCTGCTGTAGAATCGGATGATGAAAAAGTCGACGATATTAAAACGGATGGCATGATTAAGATGAAAAAACCTGGAACAACGAAAACAGCAGCAACATCTAAACCTTCATCAAGCAAAGGTAAAGCTCTAACAAAAGGGCGTAGTGGAAAACGCGGAAAATAG
Protein Sequence: MINKDNALSLDKICRSCMTEGNQMRSVYDTNTDSVQLAEMIMACASVQVVSGDGLPGLLCPKCEEQLNIAYLFKQQCERTDTTLREYTNHAISGTIKEESESLDIVVKPDIDVLEIYENDNDGGRDDDDDDDDQYSGSESVHSNYSSTVRKKKPVKNRQCRFCNKMLSTKDGLRLHERRHTGEKLKSCPVCHATFAKSNHLIRHMSMHNKPTDEYKHTCQECGMGFTKASHLHKHRREHKNTDDTVADGAGGEGCSQPDEATATVKSEVYSDNEAGTTSTSSRPKLRPKREPLDIDKLHSCKICLKSFTKSSHLNRHMLTHGVSPDKSSAKEKSTEPKEKKYMACEFCDRKFVYRKSFLHHIQLEHQISEDSDTPLSEYATIITKSKVDGSTLNSSTGNIENGGSGGGDQAGGDGTERPLGVGEDDFEEFMRQEEAKKVHACHVCNHKFTRANHLTRHMTLHRAVLIHKCDRCEKAFMTPEHLATHVQEYHVDRPYVCSLCNKPFSRGEHLIRHLKVHDKEAGNGGSDEHKCSICEKVFARSDHLARHTKLHLAQDKRHVCGECGKAFNRLDNLRTHARIHTGVRDPQRLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCAQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCSLCGRAFTQSNDLALHMRRHTGSRPYACGMCPARFIQSGQLKAHRRSQGHWLETPPELKGAHRVTPVTPLVNPPPIKFKTRVQRIKEEPSILGHTIGVGVNLVGVVAAAAAAAAAAASKESGEHSTAGDAVVSADSGASPFFVHGRDQQQQQQQQQQHQAKDLKMEEVHNFSITNLSRETNAPGPAGFPQPAGPSVVEPGTSFSNSIAMTSSTFADIRSYFTSLSKKPVPTKTETPSGNTSKKRSITDLNTSDDIVPDTPENNVKKPNKKNDKSQSKRRRIVTVSSDSETENGRSKGVPSKASQEITSTSSRKTKKEIEAHRTTKPNQNKTKDKDIEKPKNINKKKINPLEAFGSEPVAQVKIKKIQQSELNIHEDDDFDKTLIDLDEDDLFQKAEVNTTKKEKRPPVDISSVSSDDSKRASTKKKEERHVNKSSVSSDDSKNTPSKKKESSLAKEKTPSRKRKSNEDEDDPTVDPDQDRFEKKRYSAMLYQKYLNRSGPAHLGAKWIPKGKPNCLNGLCFIITGVLDSMQREDAQTLIVEHGGRCTQSVSGKVNYMVLGDDAGPSKVEKARKIGVKTISEDDLIDLICLKSGIKNQNKSEPSSETNSSQKTSTSSPAATQVKEEKSKRSIKQESNKTPVKPEKTKLPVKKEQISDDDDEIPSTTVKQEIDKVTIVPKTINNKKKTTPAPAKPAANDKQIDIGNLAWVDRYKPTDISQIIGQQGDRSNMNKLIKWLQNWQKNRAREISGKGIPKPSPWAKDDDGSYFRAALLSGPPGVGKTTTATLVCKHLGLDTVEFNASDTRNKRMVHAEVSHILSTTSLAGYAADGAAPTRQHALLMDEVDGMSGNEDRGGIQELIGLIKTSNIPIICMCNDRQHPKIRTLANYCFDLRFSKPRVEQIRGSMMSICFKEKLPIKGDAVAQIIQGTGQDVRQTLNQLALLAAGSGGDADQVTQQARAAQKDVKLGPWEVVRKVFSEEEHKTMSFIDHGKLFFYDYSIGPLFVQENYLKVVPHCPKSQHLQRFAQAADAISMGDVVDARIRSTQSWGLLDVQAMYASVLPGHYLRGHIGGQIDFPAWLGKNSRATKFKRLLSEIHGHTRMSTSCDRTSVSLDLVRPLRDAVAGPLLRDGAEGVPAAMDTMRTYSLLREDLTSLVELAHWPRTRDPFEQVDAKVKAAFTRAYNKETPTLPYAAPAAVPVKKRAAAAADDIYGEDDDAAVESDDEKVDDIKTDGMIKMKKPGTTKTAATSKPSSSKGKALTKGRSGKRGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -