Basic Information

Insect: Pterostichus niger
Gene Symbol: -
Assembly: GCA_947425015.1
Location: OX380342.1:1187544-1191344[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 9.4e-07 0.00013 23.7 1.3 2 23 134 155 133 155 0.97

2 10 2.7e-08 3.9e-06 28.5 0.5 1 23 161 183 161 183 0.99

3 10 0.0001 0.015 17.2 1.3 1 23 308 330 308 330 0.99

4 10 1.5e-05 0.0022 19.9 4.7 1 23 336 358 336 358 0.98

5 10 3.1e-07 4.3e-05 25.2 0.1 1 23 364 386 364 386 0.96

6 10 3e-07 4.2e-05 25.3 0.3 1 20 392 411 392 412 0.96

7 10 6.2e-06 0.00088 21.1 0.1 1 23 420 442 420 442 0.98

8 10 6.9e-06 0.00098 20.9 0.7 1 23 448 470 448 470 0.98

9 10 2.4e-08 3.4e-06 28.7 0.8 1 23 476 498 476 498 0.98

10 10 5.4e-06 0.00076 21.3 3.5 3 23 506 526 505 526 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	9.4e-07	0.00013	23.7	1.3	2	23	134	155	133	155	0.97
2	10	2.7e-08	3.9e-06	28.5	0.5	1	23	161	183	161	183	0.99
3	10	0.0001	0.015	17.2	1.3	1	23	308	330	308	330	0.99
4	10	1.5e-05	0.0022	19.9	4.7	1	23	336	358	336	358	0.98
5	10	3.1e-07	4.3e-05	25.2	0.1	1	23	364	386	364	386	0.96
6	10	3e-07	4.2e-05	25.3	0.3	1	20	392	411	392	412	0.96
7	10	6.2e-06	0.00088	21.1	0.1	1	23	420	442	420	442	0.98
8	10	6.9e-06	0.00098	20.9	0.7	1	23	448	470	448	470	0.98
9	10	2.4e-08	3.4e-06	28.7	0.8	1	23	476	498	476	498	0.98
10	10	5.4e-06	0.00076	21.3	3.5	3	23	506	526	505	526	0.99

Sequence Information

Coding Sequence: ATGTCTAAATTCATATGCCGCACTTGTACTACTTCGGATACCTCATTGGTTTCTCTTTTTACACATAAAATTGATGATGAATTGTTAAAAGATATATTAATTAAATGCGCAGCAATAAAGGTTTCAGAAGACGATTTATTACCACAAATGATATGCAATTCTTGTGTAGAAGTGCTTTTAATTTCGTACAAATTTAGAAAAAAATGTCAAGAAAATGATCTGAAGTTAAGGACTACATTGGATGAAAAACAAAGGAGTATCTCTAATTTTTCGCCAGAGATTAATATTGAGAGTAGTGTAGATTCTTACATATTAAAATCATTAACGGATGCAACTATTACTGAAAAATGTAAAATAGGAAACAACCAAACACCAACTATTCAACATACATCAAAATTACAATGTGATTTATGCGGAAAAACATTTACAAAAACGTCGAGTTTGAAATATCATTTGCGAATTCATAGCGGTGAACGAAATTTTCAGTGTTCTGATTGTGATAGATCATTTCCGACTTCTTCTCAATTAGCCGTCCATCAAAGATCGCACAATGGGTACAAGCCATACACTGATATCAATGAGACTTGTAAGAACATTTGTGTTGGATGCAAAACACAGTTATTATCTTTTTACAAATTCAAAACACAGTGCGAAAAATCTGATACTGTGTTGTGTTCCTATAAGAATAATATTTCATCAGTTTTTGTTAAAGAAGCTCGTGATGACATTCCAGGAGATTTGAAAATAAAACAGGAAATTGTTCATGAAGAAAACAGTAACACAGAAGACCCTGCAAGATCTCACAGTGCAAGTCCAGAACCCGATAATACAATTAAAGAATCTACAGATGAAGGTACAAATGATTGCAGTAGAAGGAAAAGTTCTCGGAATTCAAAGAGTAATTTAGTAGAGAAACCAATATATCAATGTACTATTTGTTCAGAACAGTTTAAAAAGTTGACGTATTTGGAACAACATGTTTCAACACACGAAAGTGCAACACCTTATGTATGCAAAGAATGTGGCAAATGTTTTCAAAAATACAAAAATTTAACTCTTCATCAAAAGCTGCACACGGGACAAAAACCTTACTTATGTACAATTTGTGGAAAAAGTTTTGCTCTGTCCGGAAATCTGAAGGCTCATCTAAGAATACATTCAGGCATTAAACCATATTCTTGCCAGGAATGTGGAAAGTCATTCACGCAGTGGTCCTCACTGAGAAGTCATCTTGTTTGTCATTCCGGTGAAAGATCATATGTTTGTGCCATTTGCGGAAAAACTTTCACAAGAGCTGGGATTTTATCTCGTCATATGACTTCCCATTCCGACGAAAAGAAATATCCTTGTAATATTTGCAGCAAAAGATTTAAGAATTCAAGTCAGCGAGCTCGACATTTAATCATACATACGGATGAGAAGAAATACCAGTGTACAGTTTGTGGAAAAGCATTTAATAGATCGAGTAATCTCAACGTACACAAAAAGATTCACACCGGAGTTCGACCACATGGATGTCCAATTTGTGGGAAGAGGTTCATTCAATTACACTGCTTAAAGTCGCATATGAACACACACTGTTGA
Protein Sequence: MSKFICRTCTTSDTSLVSLFTHKIDDELLKDILIKCAAIKVSEDDLLPQMICNSCVEVLLISYKFRKKCQENDLKLRTTLDEKQRSISNFSPEINIESSVDSYILKSLTDATITEKCKIGNNQTPTIQHTSKLQCDLCGKTFTKTSSLKYHLRIHSGERNFQCSDCDRSFPTSSQLAVHQRSHNGYKPYTDINETCKNICVGCKTQLLSFYKFKTQCEKSDTVLCSYKNNISSVFVKEARDDIPGDLKIKQEIVHEENSNTEDPARSHSASPEPDNTIKESTDEGTNDCSRRKSSRNSKSNLVEKPIYQCTICSEQFKKLTYLEQHVSTHESATPYVCKECGKCFQKYKNLTLHQKLHTGQKPYLCTICGKSFALSGNLKAHLRIHSGIKPYSCQECGKSFTQWSSLRSHLVCHSGERSYVCAICGKTFTRAGILSRHMTSHSDEKKYPCNICSKRFKNSSQRARHLIIHTDEKKYQCTVCGKAFNRSSNLNVHKKIHTGVRPHGCPICGKRFIQLHCLKSHMNTHC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -