Basic Information

Insect: Pterostichus niger
Gene Symbol: su(Hw)
Assembly: GCA_947425015.1
Location: OX380349.1:21457020-21460682[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 7.1e-05 0.01 17.8 0.4 2 21 125 144 124 145 0.94

2 13 0.026 3.7 9.7 0.5 1 23 180 203 180 203 0.96

3 13 1.5e-05 0.0022 19.9 2.3 2 23 208 229 207 229 0.96

4 13 3.7e-05 0.0052 18.7 1.8 1 21 234 254 234 255 0.93

5 13 5.9e-07 8.3e-05 24.3 0.4 1 23 266 288 266 288 0.98

6 13 9.4e-06 0.0013 20.5 0.4 1 23 298 320 298 320 0.99

7 13 9.7e-06 0.0014 20.5 0.9 1 23 326 348 326 348 0.98

8 13 0.00014 0.019 16.9 1.0 1 23 354 376 354 376 0.99

9 13 1.3e-05 0.0019 20.0 3.5 1 23 382 404 382 404 0.95

10 13 1.9e-05 0.0027 19.6 1.6 1 23 410 433 410 433 0.96

11 13 1.3e-05 0.0018 20.1 0.7 1 23 439 461 439 461 0.94

12 13 5.1e-07 7.2e-05 24.5 3.9 1 23 467 489 467 489 0.98

13 13 5.3e-07 7.4e-05 24.5 1.8 2 23 496 518 496 518 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	7.1e-05	0.01	17.8	0.4	2	21	125	144	124	145	0.94
2	13	0.026	3.7	9.7	0.5	1	23	180	203	180	203	0.96
3	13	1.5e-05	0.0022	19.9	2.3	2	23	208	229	207	229	0.96
4	13	3.7e-05	0.0052	18.7	1.8	1	21	234	254	234	255	0.93
5	13	5.9e-07	8.3e-05	24.3	0.4	1	23	266	288	266	288	0.98
6	13	9.4e-06	0.0013	20.5	0.4	1	23	298	320	298	320	0.99
7	13	9.7e-06	0.0014	20.5	0.9	1	23	326	348	326	348	0.98
8	13	0.00014	0.019	16.9	1.0	1	23	354	376	354	376	0.99
9	13	1.3e-05	0.0019	20.0	3.5	1	23	382	404	382	404	0.95
10	13	1.9e-05	0.0027	19.6	1.6	1	23	410	433	410	433	0.96
11	13	1.3e-05	0.0018	20.1	0.7	1	23	439	461	439	461	0.94
12	13	5.1e-07	7.2e-05	24.5	3.9	1	23	467	489	467	489	0.98
13	13	5.3e-07	7.4e-05	24.5	1.8	2	23	496	518	496	518	0.97

Sequence Information

Coding Sequence: ATGTCTGAAGCCAGCGAAGGAACCAACATCAAACAAGAAGTAAAAACAGAAGCTAACAGCTATGAAAGAGGTACAACAATTCTCGCTGACATTCCAATAGAAGAAACAATCAATCTCCACGATGCAGTTGTCATCGTACCTGAAAACACTAGTGGCAACATCACAATTAATACTGTTCATCAATCGGATAATGTTGTTGTTCTTGCTAGTATGACAAGTAATGGAGAGCTGATCACTCCAGATCTAGAGGCAGTTGTTACTGAAGTTGAGGAAGAAAATAGAGAAGATGTGAAACCTTCAGAAGTTGCTGAAAATGATGCTGACAAGGACACAAGTTTAGAAGAGGAAGAACCGATTGAGCTTGATCCTAATCAGTGCTCTTATTGCCGAAAGATCTTTAAGTCACAAACGGGCCTCAAGCGTCATCTTATAATCTGCCAGCCAGACCCATCCGACGACGATCAAGATGATCCCCTAGCATTCGAGATCTGCCACTGCTGTGGTGAGCCCCTCGATACCGCTCATAAAGTCGGCGACTTCTCCTGCTCCAAGTGCGAGAAGCTCTTCGTCAGTGAAAATGCCCGCGAGCGACATAACCGTATCGTTCATTGCGATGGACTTACCTGTCCTGATTGTGACAAGAAGTGTACCAGTCGTCGAGAACTGGAGAAACATATCTTCATGCATATGGAAAAGCCCTTTGCTTGCACCAGGTGCAATAAGGTGTTTACGAGGAAATATCATCTGGATAGACATGTACAGCAGACTGGATGCGATGGGAATCCACGCGCCCAGTACCAATGCCAAGTTTGCGAGAAAATTTTCGCTCGTCGTGACAATTTGCGTGATCATTTACGTGCTCATGCTGGACACGTCAAACGTAAGAAGATCTTTCAATGCCCTGATTGCAAGAAAGAGTTTCATGGTGCAGCGCTACTCGCAATCCATCAAAGAACGCATACTGgtgaaagaccgtttcagtgtacgatgtgccccaagcgttttccatcaagtggagcgatgaaaaaacacagtagaatgcatacaggagaacggccttatgaatgCGCAACCTGTCATGCTCGCTTCGCAGCTAAAgaaaccctcaaccgccatgttcgcactcacacgggcaataagcctcattcttgtcagttctgtggcaagtctttcattcaagctagccaacttcgtgcacatatcttccaccacactggcgagaacggatttacttgtgaacattgcggaaaagcattcaaccgacgcgCTAGATTGGTTACTCATGTTAGGTTTATCCATGAAGGGGCCAAGCCATTTGAATGTGATACCTGTAAGAAGACTTTCGTGAGGAAGGAGGATCTTGCGCGGCATTCAATCCTACATAGTGGACTTAAACCGCACGAGTGTCCAGTCTGCCACAAGTCATTCGCAATGAAATCCTCCCTAAAAACTCACATGAACACTCACCGCAAAGAGCAACCTCGTAGTTGCGACGAATGCGGCCGAGCTTTTATCCGTCAAGATTGTCTTATTCGTCACATGCGAACCAAACATCGCGATCAGCTCGAAGACATTCTTGCTGGCGCTGAAAAGAAACGTCTTCAGCAACAACTCCTTGCAGCGGCTTCTGAAGCCGTCAGCGAACAGAAACCTAGCATCGCTGAAACTGGTGTTTGGTCTGAATTGACGCTAACAGATTCTATAAAAGAATTGTTGACTTTGTTGGTTGATGAAGCGACTCTGAGGGCCTTTGGATGGCCGGATACTCCAGTTGATAAGCTTTTGGATTCGGTGATTAGAAGATGTGGACATAAACCAGCCTCTGATGAAGATTTTGATTATATTGGAAGATTGAGAGAAAATGCGAAACTACTTTTTACGGTAGTTATTGATGATTCTGCGGTGAAGAGTTTGTTAAACAATCAAACAGTTGATGAAGTAATTTTGCATGTTTTGCGTTTGGCTAAAGCGGAATAA
Protein Sequence: MSEASEGTNIKQEVKTEANSYERGTTILADIPIEETINLHDAVVIVPENTSGNITINTVHQSDNVVVLASMTSNGELITPDLEAVVTEVEEENREDVKPSEVAENDADKDTSLEEEEPIELDPNQCSYCRKIFKSQTGLKRHLIICQPDPSDDDQDDPLAFEICHCCGEPLDTAHKVGDFSCSKCEKLFVSENARERHNRIVHCDGLTCPDCDKKCTSRRELEKHIFMHMEKPFACTRCNKVFTRKYHLDRHVQQTGCDGNPRAQYQCQVCEKIFARRDNLRDHLRAHAGHVKRKKIFQCPDCKKEFHGAALLAIHQRTHTGERPFQCTMCPKRFPSSGAMKKHSRMHTGERPYECATCHARFAAKETLNRHVRTHTGNKPHSCQFCGKSFIQASQLRAHIFHHTGENGFTCEHCGKAFNRRARLVTHVRFIHEGAKPFECDTCKKTFVRKEDLARHSILHSGLKPHECPVCHKSFAMKSSLKTHMNTHRKEQPRSCDECGRAFIRQDCLIRHMRTKHRDQLEDILAGAEKKRLQQQLLAAASEAVSEQKPSIAETGVWSELTLTDSIKELLTLLVDEATLRAFGWPDTPVDKLLDSVIRRCGHKPASDEDFDYIGRLRENAKLLFTVVIDDSAVKSLLNNQTVDEVILHVLRLAKAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01226027;
90% Identity: iTF_01226027;
80% Identity: -