Pnig010787.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380334.1:39011462-39014969[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.9e-05 0.013 17.5 4.3 1 23 183 205 183 205 0.99 2 15 6.9e-05 0.0097 17.8 0.7 1 23 211 233 211 233 0.97 3 15 5.7e-05 0.0081 18.1 1.2 1 23 239 261 239 261 0.98 4 15 2.5e-07 3.5e-05 25.5 0.8 1 23 267 289 267 289 0.98 5 15 6.8e-05 0.0097 17.8 0.3 1 23 295 317 295 317 0.96 6 15 3.3e-07 4.7e-05 25.1 3.1 1 23 323 345 323 345 0.98 7 15 6.4e-05 0.009 17.9 1.9 1 23 351 373 351 373 0.95 8 15 8.2e-05 0.012 17.6 2.7 1 23 525 547 525 547 0.98 9 15 0.002 0.29 13.2 0.1 2 20 554 572 553 575 0.92 10 15 0.0014 0.2 13.7 0.3 2 23 582 603 581 603 0.97 11 15 4.7e-05 0.0066 18.3 0.4 1 20 609 628 609 631 0.94 12 15 0.00011 0.016 17.1 3.3 1 23 637 659 637 659 0.97 13 15 8.5e-07 0.00012 23.8 5.3 1 23 665 687 665 687 0.98 14 15 5.4e-05 0.0077 18.1 2.4 1 23 693 715 693 715 0.95 15 15 0.00018 0.025 16.5 1.6 1 23 721 743 721 743 0.98
Sequence Information
- Coding Sequence
- ATGTGTTTTCTGTGTCTAGATAAAGACAGTAATCTAGAGAGTACTTTTAACAAAGATAAAAATAAGATATCCATTCAAGAAAAGCTTGAATACTGTGTTTCTGAAATGGCAACACCTGGATTGGAATTACCAACGCTTATTTGTCATAATTGTCATAATCATGTTAATGCATTCTACACATTCAAAAAAATGTGTTTAGGTAGTAAAAAGCGATTAGATGATTACCTAAATCAAATGAAACAAAATCCATCAAGCAGTACAACCCCAAATTTAACCCCAAATTTTGAAACTAGATCAAAGAAAAATCTAGTTAATTTCAATAGTAAAAAGATATCAAAAAGCATAGAACCTGATGAAGACGATAATACAACTGAAGCTATGTCAGATGATGATTCAAATTCATTTTCCGGGGATCAAGATGCTCTTGAAACTGAGCCCGACATAATGGAATTTAAAAATGAACCTGTAGACTTACCAGATACTACAGAAAATAATTCGAATACTAACGAATCTTTCCCAGAAGGTAGATCTGAACCAATTAAAGTATACAAATGTACAGCATGTAATAGAGAATTTAGAACAAAACATGGTTTACAAAAACACACTCAAATGCACACGAATCCGGAGAAATTTAAATGTTCAGTTTGCCAAGAGGAATTCACTTCACAAATAGAACTGAAGCATCATTGGGCCGTTCATGCTACTGAATACCCATTCCAGTGTAAATTTTGTTCCAAAAAATTCACCGATGAAATATCTTTATCAGCCCATTTGGATACTCACACCGGAGACAAGCCATACGAATGTTCACTATGTCCAAAAACATTCAAAGATCGCAGTGGTTTGACCAAACATATGTACATTCACTCGGAAGACAGACCCTACTTATGTACAATTTGTGGAAAAGGATTCCGACAAAAAGCAATTTTAACTGAACACATAAATAGACATTCTGGCCTCAAACCATTTGAGTGCGAGATCTGTCAAAAAAGATTCAAAGATAAAAAGCAGCTTAAAAGACATTTAAACAGACATGTTGATATACAACCTTTCCTGTGTACTGTTTGCGGTAAACGGTACAAACATAAAATTAGTTTAGTAAATCATATTAAAGAACACAATGATGAAAAGAATTATGAATGTAGAACTAGCCCTGAACCTGATTTACCTCTACTTATATGTACTGCCTGTCACAATCATGTAAATGCATTTTACTCATTCAAGAAGCTTTGTTTAGATAGTAAGAAGAAATTAAATGAATTTATTCGTCACACAAAACCGAATAAATCTTCAACCAGCAACGTAAAGGCCGACTTCGAAGTGACTACAGTAAAAAATGATGTATCTGATTCTCGGAAAACAAAGTCTGCAGATCTAACTCCTAACACTAATGATGATGCCTCAGATGACAGTGACGATTCCAATTCATTTTCTGGAGATCAAGATCAGGATATATTTGGAAATAATCCAGAAATAATTGAAATGAAAAGTGAACCACTTGAATTAAACGATAACTCAAATACAAACGAATCATTTCCTAGTATAGAAAACAAAAGTGAATCAATAAAACTTTATAAATGTCCAATTTGTGAAAAACAGTTCAAGTTAAAGAATCATTTGACAATGCATAGTCAAGTTCATAAAGACATAAAAGGTATTAAATGTTCAGTTTGCCAAGAAAAATTTTCGTCTCCAGTCGAACTACGCGAACACTGGCCAGTACATGCTAGTGAATATCCCTCCGAATGCAAATTTTGTGAAAGAAAATTCACAGATGATATTGCCTTAACAGCACACTTGGATACTCATTCTGCTGAGAAACCATATGAATGTACAGTTTGTTCAAAAACGTTTAAGGACAAAGGTGGTGTAAAGAAACACATGCCTATACATTCAGAAGAAAGACCTCATATGTGTACAATATGTGGAAAACGGTTTCGGCATCGAGCGATTCTTACTGATCATATAAACACGCACTCGGGTTTAAAACCATTTGAATGTGAGACTTGTCAAAAGAAATTCGCAGACAAAAAGCATTTAAAGAAACATATGAAAACACATTTAGATCTCAGACCGTTTTTATGCACAATGTGCGGTAAACGGTACAAACATAAAATCAGTTTGATAAATCACATTAAGGAGCATAATGATGAAAAACAATTCGAGTGTAGAGTGTGTCAGAAGAAATTTGTGCGTTTGGGTAGTTTAAAATATCATGAGAAGAGTCATGAAGTAAAATAA
- Protein Sequence
- MCFLCLDKDSNLESTFNKDKNKISIQEKLEYCVSEMATPGLELPTLICHNCHNHVNAFYTFKKMCLGSKKRLDDYLNQMKQNPSSSTTPNLTPNFETRSKKNLVNFNSKKISKSIEPDEDDNTTEAMSDDDSNSFSGDQDALETEPDIMEFKNEPVDLPDTTENNSNTNESFPEGRSEPIKVYKCTACNREFRTKHGLQKHTQMHTNPEKFKCSVCQEEFTSQIELKHHWAVHATEYPFQCKFCSKKFTDEISLSAHLDTHTGDKPYECSLCPKTFKDRSGLTKHMYIHSEDRPYLCTICGKGFRQKAILTEHINRHSGLKPFECEICQKRFKDKKQLKRHLNRHVDIQPFLCTVCGKRYKHKISLVNHIKEHNDEKNYECRTSPEPDLPLLICTACHNHVNAFYSFKKLCLDSKKKLNEFIRHTKPNKSSTSNVKADFEVTTVKNDVSDSRKTKSADLTPNTNDDASDDSDDSNSFSGDQDQDIFGNNPEIIEMKSEPLELNDNSNTNESFPSIENKSESIKLYKCPICEKQFKLKNHLTMHSQVHKDIKGIKCSVCQEKFSSPVELREHWPVHASEYPSECKFCERKFTDDIALTAHLDTHSAEKPYECTVCSKTFKDKGGVKKHMPIHSEERPHMCTICGKRFRHRAILTDHINTHSGLKPFECETCQKKFADKKHLKKHMKTHLDLRPFLCTMCGKRYKHKISLINHIKEHNDEKQFECRVCQKKFVRLGSLKYHEKSHEVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226028;
- 90% Identity
- -
- 80% Identity
- -