Basic Information

Insect: Pterostichus niger
Gene Symbol: -
Assembly: GCA_947425015.1
Location: OX380338.1:6122320-6125663[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.5e-05 0.0035 19.2 1.5 1 23 454 476 454 476 0.97

2 18 0.014 2 10.5 3.3 1 20 482 501 482 504 0.93

3 18 1.8e-05 0.0025 19.7 0.5 1 23 510 532 510 532 0.99

4 18 3.7e-05 0.0052 18.7 3.5 1 21 538 558 538 560 0.94

5 18 3.8e-05 0.0054 18.6 4.6 1 23 566 588 566 588 0.99

6 18 3.7e-05 0.0052 18.7 5.3 1 23 594 616 594 616 0.97

7 18 2.9e-05 0.0041 19.0 8.1 1 23 622 644 622 644 0.97

8 18 1.4e-07 2e-05 26.3 2.7 1 23 650 672 650 672 0.98

9 18 0.00011 0.015 17.2 6.7 1 23 678 700 678 700 0.97

10 18 1.8e-05 0.0025 19.7 6.9 1 23 706 728 706 728 0.98

11 18 6.8e-07 9.5e-05 24.1 2.8 1 23 734 756 734 756 0.98

12 18 9.5e-06 0.0013 20.5 7.9 1 23 762 784 762 784 0.98

13 18 4.1e-05 0.0057 18.5 9.1 1 23 790 812 790 812 0.98

14 18 2.5e-05 0.0035 19.2 7.7 1 23 818 840 818 840 0.98

15 18 0.0015 0.21 13.6 8.8 1 21 846 866 846 868 0.94

16 18 0.00012 0.017 17.1 0.5 1 23 874 896 874 896 0.97

17 18 0.047 6.6 8.9 4.5 1 23 906 928 906 928 0.98

18 18 1e-06 0.00014 23.6 0.9 1 23 934 956 934 956 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.5e-05	0.0035	19.2	1.5	1	23	454	476	454	476	0.97
2	18	0.014	2	10.5	3.3	1	20	482	501	482	504	0.93
3	18	1.8e-05	0.0025	19.7	0.5	1	23	510	532	510	532	0.99
4	18	3.7e-05	0.0052	18.7	3.5	1	21	538	558	538	560	0.94
5	18	3.8e-05	0.0054	18.6	4.6	1	23	566	588	566	588	0.99
6	18	3.7e-05	0.0052	18.7	5.3	1	23	594	616	594	616	0.97
7	18	2.9e-05	0.0041	19.0	8.1	1	23	622	644	622	644	0.97
8	18	1.4e-07	2e-05	26.3	2.7	1	23	650	672	650	672	0.98
9	18	0.00011	0.015	17.2	6.7	1	23	678	700	678	700	0.97
10	18	1.8e-05	0.0025	19.7	6.9	1	23	706	728	706	728	0.98
11	18	6.8e-07	9.5e-05	24.1	2.8	1	23	734	756	734	756	0.98
12	18	9.5e-06	0.0013	20.5	7.9	1	23	762	784	762	784	0.98
13	18	4.1e-05	0.0057	18.5	9.1	1	23	790	812	790	812	0.98
14	18	2.5e-05	0.0035	19.2	7.7	1	23	818	840	818	840	0.98
15	18	0.0015	0.21	13.6	8.8	1	21	846	866	846	868	0.94
16	18	0.00012	0.017	17.1	0.5	1	23	874	896	874	896	0.97
17	18	0.047	6.6	8.9	4.5	1	23	906	928	906	928	0.98
18	18	1e-06	0.00014	23.6	0.9	1	23	934	956	934	956	0.96

Sequence Information

Coding Sequence: ATGAATTCTGGTGACCAACATAATTTAGCCCCAACGGCTGGGGCACAATCGCAACCGGGTGCATCATCAGATGTTCAACCTACAACAACAGTGCCCACCGATTTGCGTGTGAACACCACCGCGTTGAACGCTGTTGCTCTTAGTAGTGTGGCCAAGTACTGGGTGCTCACTAACCTCCTGCCAGGACCAATTCCGCAGGTATCGGTGTATGGGTTGCCCGGGGCTGGCCGCAACGACAGCACAGGGAAACCGACTCAGGAGGGTCTGCTCGCTCAACACGGTGGACTTTTACCAACCGATCCAATGCTACTGCAGCACAACTCTCAAATACCTGTGAGTATATCCACACCGCAGGGAGTAGCCAACATATCTATACCAGTCAACACAATGCATATGGATAATCGACAACCGAATCGCAACCAGGTGGGCCAGAATCAGCAGCAAGCGGGACAGCAAGGAGATGCGCAGACAGCGAGTCAGAATCAACAGCAGATGAACAGCCACGCGCAACAGCAACAACAGCAGCTCAACTCACAGCCACCACCTGGACATTCTTCGAACCCCGGGCCCAACATGGTTCAAGTTCAAGTGCAAGACGGTAATATGGTCTCCGTCATCGACGACTCCAAGGATCAGATTCAGAAATCTGACATGCTGAGCAATCAGCAACAACAACAGTGCAACCAACAAGAACAAATGCAACAACAAATGTCTGGACCGGACAGTCAACAAATGGGTCAACAACAAAACCTCACAGTGCAGCAGCTACAACATCTTCAAGTGCAGCAGGTTATTGATAATGTCGTTCGAATGGAAAGTTCAGTAGATAATAATCAAGAAGGCAATCAAAATGATGGAAGTATGCCGGATAACTTACAAATAGTGAAAGATGAGAAAGGCATTCAGAATTGTGCGAAACTTCTATCATCGGCGCAATTTGGTTTACAAGATATTAAAGGAAACTTTACAATGCCGGACATTAAGACGGGTCATCATATGATGGATGTGCGGACAGCTGACGGTAGCATAGTCAAGATATCGGCTGGTATTCAAGAACAGGATTTGGCTAAAACGTTGGGTGTTGAAATGGTTCAAAACATGTACAAAGTGAATGTAGACGATATAAACCAACTATTAGCGTATCACGAAGTGTTCGGCAAGCTGCAGAATGAGATGGTGGCGGGGGTGGGAGGTCAGCAAGGTACAGTGGGAGCGACAGGTGCGCCCAACAACTCGAGCGCGGGGGTGGTGACAAACGCCAACATCGCCAACATGAATAAGTCGCTAgagagcgatcaggagccgtccacatcgtccatctcggcggacagtccaccggccgtgattgcggctggcacgcatgtgtgcgatctgtgcggcaagatgttcccattccgctatcagctcattgtgcaccggcgctatcacacagagcgtaaaccctttacgtgtcaggtgtgcggcaaagcgttcacgtgcgctgccgagctcacgcgacacggcaagtgccacctaggcggttccatgtatacctgtgccgtctgttttcatgtgttcgctgatgctgcgtcacttgaacgtcacatgaagcgccactccaccgacaaaccgtacgcctgtaacatttgcggcaagtcttttgctcgcaaggagcacctggacaaccatacgcggtgtcatacgggcgaaacgccataccggtgtcagtactgcgctaaaacctttacccgcaaagaacatatggttaaccatgtccgcaaacacactggtgaaactccacacagatgtgagatttgcaaaaagtcgttcacacgtaaagaacatttcatgaatcatgttatgtggcatacaggtgagactccgcaccactgtacgacttgtggtaagaagtatacgcgcaaggagcacctcgcgaaccacatgcgctcacataccaatgatacaccgttccgttgtgagatttgcggcaagtcgttcacgcgaaaagaacacttcacgaaccacatcatgtggcacacgggcgagacgccgcaccgttgtgacttttgttccaagacattcacgcgcaaagagcatctgttgaatcacgtgcgtcagcacaccggcgagtcgcctcaccgctgcaccttctgctccaagtcgttcacccgcaaagagcacctcatcaaccacatccgacaacacacgggcgagacgcccttccgatgcagctactgccccaaggcgttcacccgcaaggaccacctggtgaaccacgtgcgtcagcacaccggtgagtccccacacaagtgcacgtattgcacgaaatccttcactcgcaaagaacacctaacgaatcatgttcgccaacacacaggcgaatctccgcatcggtgtcacttctgctccaagtcgttcacccgcaaggagcatctgacgaaccacgtgcgcattcacactggggaatcgccgcaccgctgcgaattctgccagaagacattcacccgcaaagaacacctcaccaaccacctgcgccagcacacgggcgagacgccgcattgttgcaacgtatgctccaagccgttcacgcggaaagagcatctcatcaaccatatgcgctgccacacgggcgagcgcccgttcgcgtgcaccgaatgcggcaagtctttcccgctcaagggcaacttgctgttccatcaacgttcacacaacaagggctccaacgcagagcgaccgtttcgctgcgacctatgtcctaaggactttatgtgcaaagggcatttggtatcgcataggcgttcacatagcggtgagcggccgcacgcgtgtcctgactgcggcaagacctttgtggagaagggcaacatgttgcgacatctgcgtaagcacacaagtgaagcggcacagcaggcggcTGTGGCCGTGTCTGTGGCGCAGCCCTCCACGTCCAACATCCAGATACCACAGATTAGCCAAGCTCAGGCGCAAGCACAGGCGATGCCACCGCCTATGCCGCAACATCTGCCGCTGCACCAGCAGCCTGCGCATCCTGTCGTTGTACCGACCGCCAACGGCAACGTGCTTGCCTCGTACTAA
Protein Sequence: MNSGDQHNLAPTAGAQSQPGASSDVQPTTTVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGAGRNDSTGKPTQEGLLAQHGGLLPTDPMLLQHNSQIPVSISTPQGVANISIPVNTMHMDNRQPNRNQVGQNQQQAGQQGDAQTASQNQQQMNSHAQQQQQQLNSQPPPGHSSNPGPNMVQVQVQDGNMVSVIDDSKDQIQKSDMLSNQQQQQCNQQEQMQQQMSGPDSQQMGQQQNLTVQQLQHLQVQQVIDNVVRMESSVDNNQEGNQNDGSMPDNLQIVKDEKGIQNCAKLLSSAQFGLQDIKGNFTMPDIKTGHHMMDVRTADGSIVKISAGIQEQDLAKTLGVEMVQNMYKVNVDDINQLLAYHEVFGKLQNEMVAGVGGQQGTVGATGAPNNSSAGVVTNANIANMNKSLESDQEPSTSSISADSPPAVIAAGTHVCDLCGKMFPFRYQLIVHRRYHTERKPFTCQVCGKAFTCAAELTRHGKCHLGGSMYTCAVCFHVFADAASLERHMKRHSTDKPYACNICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTTCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTFCSKSFTRKEHLINHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRCHTGERPFACTECGKSFPLKGNLLFHQRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRKHTSEAAQQAAVAVSVAQPSTSNIQIPQISQAQAQAQAMPPPMPQHLPLHQQPAHPVVVPTANGNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00903477;
90% Identity: iTF_01226018;
80% Identity: -