Pnig027937.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380346.1:32362609-32365902[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.88 1.2e+02 4.9 0.3 2 23 213 234 212 234 0.96 2 29 0.00024 0.033 16.1 0.0 1 23 240 262 240 262 0.98 3 29 2.6e-05 0.0036 19.2 2.3 1 23 268 290 268 290 0.99 4 29 0.0004 0.056 15.4 4.2 1 23 296 319 296 319 0.96 5 29 0.0011 0.16 14.0 0.3 2 22 327 347 326 350 0.89 6 29 0.0059 0.84 11.7 0.7 1 23 355 377 355 377 0.98 7 29 0.0095 1.3 11.1 3.2 1 23 383 406 383 406 0.96 8 29 3.3e-05 0.0046 18.8 3.6 1 23 412 436 412 436 0.93 9 29 3.6e-06 0.00051 21.8 7.6 1 23 444 466 444 466 0.98 10 29 1.4 2e+02 4.3 1.6 5 20 477 492 474 495 0.87 11 29 0.0041 0.58 12.2 0.8 1 23 501 523 501 523 0.95 12 29 0.16 23 7.2 2.7 1 23 528 550 528 550 0.94 13 29 0.038 5.4 9.2 1.1 1 23 556 578 556 578 0.97 14 29 0.7 99 5.2 0.1 5 23 592 610 588 610 0.86 15 29 0.027 3.8 9.6 0.6 1 23 616 638 616 638 0.96 16 29 0.011 1.6 10.8 2.0 1 23 643 665 643 665 0.95 17 29 0.00035 0.049 15.6 0.3 1 23 669 691 669 691 0.99 18 29 0.00023 0.032 16.2 0.5 2 23 698 719 697 719 0.96 19 29 2.5e-05 0.0035 19.2 2.9 1 23 725 747 725 747 0.99 20 29 5.6e-05 0.0079 18.1 0.3 1 23 754 777 754 777 0.94 21 29 0.041 5.8 9.1 3.5 1 23 783 806 783 806 0.95 22 29 0.031 4.3 9.5 0.2 1 23 821 844 821 844 0.96 23 29 0.038 5.3 9.2 1.5 2 23 856 878 856 878 0.94 24 29 4e-05 0.0056 18.6 0.3 3 23 888 908 886 908 0.96 25 29 0.001 0.14 14.1 0.6 2 23 927 948 926 948 0.96 26 29 0.00021 0.029 16.3 0.5 2 23 951 972 950 972 0.97 27 29 0.00085 0.12 14.4 2.1 1 23 989 1011 989 1011 0.98 28 29 0.0082 1.2 11.3 2.6 2 21 1014 1033 1013 1035 0.94 29 29 0.0075 1.1 11.4 0.9 1 23 1044 1065 1044 1065 0.98
Sequence Information
- Coding Sequence
- ATGTTACAAGGTACCAGCAACATCCCGGATGAAAAATTAGACCAAGTACAAATTAATATAGATAATCGTGAAAAAGAGGTAAGAGAAAATGAAGAAGATGAAATAGAAGAATTCGATCTTAAAGCAGAGATTCAAAATTTGATGGAATTATCAGATGAACTAGACGAACTAGATGACTCTACACCTAAAGAAACTGTCGAGAAAAAAATTACAGAACAATCGAAAAATCAAGTTCCTCGCGGAAATAAACATTTGAAACGTCGAGCTCGTTCAACCTCAAACGAAAATTCTAATGATCAATCAAATAAAATAAAAGAAAAAATTGTGAAAAAACAAAGTTCACGTCGTGTTAAAAAATTGAGCCATCTTGCTCCTTCAACTTCGAACGAAAATTCTAATCAAATTGAAACCTACACTGACGACGATTCTGACTACAATCCACCCGACGACGCCGATTCAAGTTCTTCAGAAACAAAAATATCAAGAAACAATTCTCACATAAAAGAAAACGTCTCAGATGATGAAGATGAAAATATCTCGAAATCTGTTGATGAAGATATCAATATTAATAACTTAAATAATCCATTTTATATGAACAAAATTTTGGCTAAATGTAAAACAGAAGAAACAGGCATAAAATGTTGTATTTGTACAATTATAATTTCGCCGCCAGAGAACATAAAACAACATTTGAAAGAACATGCTGGTTTATCAAACTTTCAATGCGCGATTTGCAACGAAAACTTTGTAAAAAAACCGGAGTTAGTCGCGCACATAAAAGGGCACGCTTTTAAACATAATTATAAATGTAAAATTTGTACTAAACGTTTTCAAAACTTATCGGAATATAACGAACACATAAATCGGCATTTCAATGTAAAAAAACATAAATGTACAATTTGTGACAAAATGTTTAAGTATCCTCACGAAATACGAACTCATATTTACAAGGAACATAAAGATAAAATAGAAATGGTTGAGTGTACTTACTGTAATGAACAATTCCCTACGAAAGAATTGTTAGAAAACCATAAACTGAAAGTAAATCATGAAGGATTGAATTACAATTGTCCATTTTGTGAACAAATATTTACTGAGAAAGAAAAATACGATCAACATCAAAATATACATTTAGGAATAAATACTTTTGACTGTCATCTTTGTACAAATCAATTTAAATCAAGACGTGGATTAAATATTCATATTAAATCAAAACATTCCACAACAGGTACGTTTCAATGCAAAATTTGTCATAAAAAATTCTTTAATAATATTTTATTAATCAGACATATGAAAAGAACAGTACATCCCAACGCTAGAGAATTAAAATTTAAATGTAACGTTTGTCATAAATCGTTTATAAGAAAAAAATACTTACAACACCACATGAGGCTGCATCGAAAACGAGCTAGAAACGCGGAATGTATTTTTTGTCCTAAAAAGTATTTCACGACTGATTGCTTAACACGACATATTCCCAAACATGAAGATGTACAAAATTTCGATTGTTACATTTGCCAAGAACATTTCGAAAATAAAGAAAGTTTAGCTGAACATGTATCAAACCATCCTGGACCAAAATTCGAATGTAAAGTTTGTACAACAGTCTATCACAGAAAATGTGATTTAGATGTACATGCAGTTAGTCACGAGGAAATAAAGGTTTATAAATGTCATTTATGTTCAGAAGAATTCGGAGAAACAAGAGTATTAAATAAACATATAGAAAATCATTCATTACTCTTGTCTGGACCAAGAACAATTGAATGTATTTTTTGTCCAAAAAAATATTACAATGAAAAGGATTTAATATTGCATATTCCCACACATGCTGATGTAGAAAATTTCGATTGTTACATCTGTAAAAATCGTTTTGAAAATGAGCAAAGTCTATCTGAACATGTAAGGGATCATCCTGGACCTAAATATGAATGTAAAACTTGTAAAACAATTTATTATAGAGAACATGACTTAAAAGTACATGAAGTAAGCCATTTGGAAGCTTTTAAATGTAATTTATGTCCGCAAAAATTCGGAGAACAAAAGTTATTAGACGCACATATAAACACTCATAATTATATTCCATCGGTGAAGTGCTCAATTTGTAATTTGAAGTTGAGTAGACAAAGAGATTTAGAACGACATATGGACTTGCATTCTGGCATAAAAAAATTCAAATGTACAATTTGTGAAAAGAAATTTTCCTTGAAATTATATTTAAATAAACATATGCAAAGTCATGCTGATGTTCTTGATAAATATGAATGTACGTACTGCAAAAAAAGATTCGCTGACGAAAACCTTCTTAGAATTCATATTGGAATTAATCACGCGACAGTACAACAATTTAAATGTTCCTATTGTGACAACCAATTCTTTAATAAACAATTTTTAGATAAACATCTACAAGATTATCATCCAAATGAAAATGTTCCTATTCCGAATGAATTGGAAGTATTATATCAATGTTCTTTTTGTGAAGAACAGTTTTCAGATGAAAATATTTTGAATGAACACATCAAAGAATTACATTCTAACGAACCGGAAACGGAAGCAGTTGATGGACAATGTTCAATGTGTGAAGAAAAATGTGAAGATAATACCAAATTAAAACAACATATTTTGGATATACATTTTGGTATAAAAACTAGTGTTTTGGACTGTACTTTGTGTGGTAAAAAATTCACGAATGCAAATGGTTTTCAAGAACATATGTCTATTCATAATACAATTGATGATATAAAACCTGATCCAGAACCACCTAAAAAGATAATTATATCTTGTTATTATTGCCAGGAGAAATTTGAGAGTTTAGGGGATTTAAGGAACCACAAAAAAGTCCACGAAATTAAGTGTCCGACTTGTAAGAAAATATTACCATCGTCTAGATATTTAAACAGTCATATGAAAATACATGGAAAGAATAATACAGGAACTATTTATATTAATAATGACGTTACTAAATTTAAGTGTTATGTGTGTAGAAAGTATTTTAATAATTTAGAATCTTTAAACATTCACAAAAAAATTCACATGGTTAAATGTAAAATTTGTTCAAGAATATTGTCGTCGTCACGAGATTTAAAAAATCATATGCAGTGTCATGAAAGAGATTTGTCTTGTGAGAAATTCACTTGTGAAATTTGTGGTAAAGAAGTATTGCAACGTTTATTTAAGTCTCATATGCGGAATCATAATAAACAATCTATAACTGATTCTGCACATGAAGAAACTGCTGATGAAGAAGCTGCTGATGAAGAAACTGCTGATGAGGAAGCTGCTGATGCAGTCTGA
- Protein Sequence
- MLQGTSNIPDEKLDQVQINIDNREKEVRENEEDEIEEFDLKAEIQNLMELSDELDELDDSTPKETVEKKITEQSKNQVPRGNKHLKRRARSTSNENSNDQSNKIKEKIVKKQSSRRVKKLSHLAPSTSNENSNQIETYTDDDSDYNPPDDADSSSSETKISRNNSHIKENVSDDEDENISKSVDEDININNLNNPFYMNKILAKCKTEETGIKCCICTIIISPPENIKQHLKEHAGLSNFQCAICNENFVKKPELVAHIKGHAFKHNYKCKICTKRFQNLSEYNEHINRHFNVKKHKCTICDKMFKYPHEIRTHIYKEHKDKIEMVECTYCNEQFPTKELLENHKLKVNHEGLNYNCPFCEQIFTEKEKYDQHQNIHLGINTFDCHLCTNQFKSRRGLNIHIKSKHSTTGTFQCKICHKKFFNNILLIRHMKRTVHPNARELKFKCNVCHKSFIRKKYLQHHMRLHRKRARNAECIFCPKKYFTTDCLTRHIPKHEDVQNFDCYICQEHFENKESLAEHVSNHPGPKFECKVCTTVYHRKCDLDVHAVSHEEIKVYKCHLCSEEFGETRVLNKHIENHSLLLSGPRTIECIFCPKKYYNEKDLILHIPTHADVENFDCYICKNRFENEQSLSEHVRDHPGPKYECKTCKTIYYREHDLKVHEVSHLEAFKCNLCPQKFGEQKLLDAHINTHNYIPSVKCSICNLKLSRQRDLERHMDLHSGIKKFKCTICEKKFSLKLYLNKHMQSHADVLDKYECTYCKKRFADENLLRIHIGINHATVQQFKCSYCDNQFFNKQFLDKHLQDYHPNENVPIPNELEVLYQCSFCEEQFSDENILNEHIKELHSNEPETEAVDGQCSMCEEKCEDNTKLKQHILDIHFGIKTSVLDCTLCGKKFTNANGFQEHMSIHNTIDDIKPDPEPPKKIIISCYYCQEKFESLGDLRNHKKVHEIKCPTCKKILPSSRYLNSHMKIHGKNNTGTIYINNDVTKFKCYVCRKYFNNLESLNIHKKIHMVKCKICSRILSSSRDLKNHMQCHERDLSCEKFTCEICGKEVLQRLFKSHMRNHNKQSITDSAHEETADEEAADEETADEEAADAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -