Pnig027938.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380346.1:32367468-32375114[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 4e-05 0.0057 18.6 0.5 1 23 343 366 343 366 0.96 2 33 0.004 0.56 12.3 4.7 1 23 371 393 371 393 0.98 3 33 0.0007 0.098 14.6 4.2 1 23 397 420 397 420 0.97 4 33 0.00017 0.024 16.6 2.8 1 23 422 445 422 445 0.98 5 33 0.0015 0.22 13.6 0.7 2 23 449 471 448 471 0.95 6 33 0.00055 0.078 15.0 1.2 1 23 482 505 482 505 0.95 7 33 2.5e-06 0.00035 22.4 0.5 1 23 508 530 508 530 0.98 8 33 0.0084 1.2 11.2 1.0 1 23 533 555 533 555 0.97 9 33 0.028 4 9.6 0.2 3 23 558 579 558 579 0.95 10 33 2.6e-06 0.00036 22.3 0.6 1 23 582 604 582 604 0.98 11 33 0.082 12 8.1 0.2 1 23 607 630 607 630 0.89 12 33 0.14 20 7.4 0.3 3 23 633 654 631 654 0.96 13 33 0.069 9.8 8.4 3.5 1 22 657 678 657 681 0.91 14 33 3.4e-05 0.0047 18.8 0.7 1 23 682 705 682 705 0.97 15 33 0.46 65 5.8 0.3 2 23 717 739 716 739 0.94 16 33 0.0068 0.96 11.5 1.0 1 21 742 762 742 763 0.96 17 33 8.6e-06 0.0012 20.7 6.0 1 23 1066 1088 1066 1088 0.98 18 33 6.8e-06 0.00095 21.0 1.1 1 23 1094 1117 1094 1117 0.97 19 33 8.6e-05 0.012 17.5 2.1 1 23 1123 1145 1123 1145 0.99 20 33 0.054 7.7 8.7 0.5 1 23 1152 1174 1152 1174 0.96 21 33 0.033 4.7 9.4 2.2 1 23 1180 1203 1180 1203 0.96 22 33 0.00072 0.1 14.6 4.8 1 23 1206 1228 1206 1228 0.99 23 33 0.00093 0.13 14.2 0.3 2 23 1233 1255 1232 1255 0.95 24 33 3.3e-05 0.0046 18.8 1.1 1 23 1264 1289 1264 1289 0.98 25 33 0.017 2.5 10.3 2.7 2 23 1296 1317 1295 1317 0.97 26 33 0.25 36 6.6 1.3 1 23 1323 1345 1323 1345 0.94 27 33 0.00015 0.021 16.8 0.8 1 23 1351 1374 1351 1374 0.95 28 33 3.7e-05 0.0053 18.6 1.7 1 23 1380 1403 1380 1403 0.97 29 33 4.7e-05 0.0067 18.3 1.3 1 23 1409 1432 1409 1432 0.98 30 33 7.6 1.1e+03 1.9 1.9 1 23 1437 1460 1437 1460 0.89 31 33 8.4e-06 0.0012 20.7 2.4 1 23 1465 1487 1465 1487 0.99 32 33 0.0051 0.72 11.9 1.4 1 23 1492 1514 1492 1514 0.97 33 33 2.5e-05 0.0036 19.2 1.1 1 23 1551 1574 1551 1574 0.96
Sequence Information
- Coding Sequence
- ATGTGTTTAAAAAGTTACAATCGCTTTAACGAATTCATTATTCTATTAAATGGAAGAGAGAGAGGTGTAAAACAAAGATTCAAGAATTTACAAATAAATTTCGGACTGAATAATTTTTTAAATAGCAAACCAGTACAGCTGAAGCCAAGTACTGATTTTAATATTAAACAAGAGATCCAAGATATTTTATTTGATGACTCTGATGATGAAGATATTGAAGATTGGTTTGCAAAAGAAATGGAGATCGAAGATTCATTACCGCCAATTAAACCTAAAGATGAAGAATGGAAAGATTCAATGATTTCATCAATAAAATCAGAAGTTTATTTGTTGTTATTAGAAGCTGAAAAACAAGAAGTAATTAAAGATCCAGAATTGCTACCAGAAAAAACAGAAGATGGCCAACATTTTGAAGAAGAAATAAAGTCTGAAAATCTAGAAGGAATTGAAGATTTGCTATCTGAAAAAATAGAAATAGTTGACCACTTGTTACCTGAAAAAATAGAAGAAGAACTAACATTGCCAAAAGAAGAACCAGAAAAAATGGAAGAAACGTTACAACTATTTGAAAAAGAAGTACAATCAACTGAAGAAATAGAAGAACCAGAAAAAATGGAAGAAACGTTACAACTATTTGAAAAGGAAGTACAATCAACTGAAGAAATAGAAGAACCAGAAAAAATGGAGGACTCTTTACAGCTATTTGAAAAAGAAGAAAAAAATATTGAATATCAAGTACAGTCAACTGAAGAAACTGAACTAGAAGAAACACTTTCACCCGAACCTGAAAAAAACGAACAAGAAAAAAAGATAGAACCGTTACAACCAGTTGAAATACAGGAAGGAGAAATTGAAGATCAAATACAATCAGAAGAAAAAGCAAAGGAAATTGTAGGTCCATTACCATTATTACACCAAGAACAGCAAATCAATAAAGACAAAATAATTATAAAATTAGTTTCACAAAAAGTTAAAGTACAGGATGATAATTCTACAAAGAAACCTGTAGCGTTGCGAATTGAAAATTTTCAATGTCTTACGTGTAATAAAAAATTTCCTTCAAACGCTGACCTTCAAAATCATCTTAAAGCTGATCATATATTTAATCCATTTACTTGTACAATATGCAACAAAAAATTCCAGTATAAAAAATCGTTCGACACACATGTTAAACGACATTCTGGTACTTATAAATGTGCTGATTGTACAAAAGTATTCCATAACATTAGTAGTTTAAGGAACCATATTGACAAATGTCATAAATATGAATGTACGAAGTGCAAAGAAATATTTTCTCACAAAGTTTATTTAGAAATGCATATGTACACTTCACATGAATTATTAGTTTGCTCAAAATGTGACCAAATATTTGCGAATTTTTCAGAGTTTAAACAACATACGGATACCAGCCATGTATTTATTCCTACACCTGAACCTGCTTGGTTTGAATGTTCGGTATGCAAATTAAAATTTACAGATAAATCTTTTCTTGAAATTCATACAAATCTTTATCATTTAAAATTTGAATGCTCCAAATGTAAAAAACGTTTTGCTAATGCTTCTCTATTAAAAGAGCACATGATTATTCATTTAAATTTTAAATGTACATTGTGTAGTCAAGCATTTGATAATTATTTGGATTTAGAGCAACATAAAAAAGAACATATTGGTTGTTCAATGTGTGAACAAATATTTGTAGATAAATCTATTTTAAAACGTCATATAAATGATGTACATTTAAAATTTGAATGTTCCAAATGTAAAAAACGTTTTGCTAATGCTTCTCTATTAAAAGATCACATGATTATTCATTCAGATTATCAATGTATAACCTGTGATCTAATTTTTGCTAATTACTCGGATTTAGAGCAACATTTTGCACTATCTCATTTTGGCTGTTTAACTTGTACACGAAAATTTGCAAATCAAGCTATTTTCGTACGTCATATGAATGTTGTTCATTTCAAATTTGAATGTTCCAAATGTAAAAAACGTTTTTTAACTACAACTTTATTACAGGAGCACATGCATATGAATTCACATTTTGCTTGTAAATTGTGTAACCGGAACTTTACAAATTATCCGGATTTAGAAAAACATTTAAAAACTCCTCATATGGAAGAAACTTTATTTCTTAATATTTATTTATCATGTACGATTTGTAAAGAAAAATTTTTAGATATACAAGTTTTGAAAAACCACATGAACAATGTTCATTTAAAATTCGAATGTACAAAGTGTAAAAAACGATTTTTAAATGAAACTTTATTACAGCAACACATGCAGTTAGAAAATGCTTGTTCCACAGAAGTCAAACTTAATGACATTCAATCGATTCCTACACAAAATTCCACAGAAAATACAGTTTCTAAACTTCGTAACACTCCTTTAAAATTTGATTGTTCTGCAGAATCTGAATTGGATGCTCCAATATACATTTGTTGTACATGTCAGAAACCTTTTCTGACCTTTTACAGTTTTAAGAAAATGTGCATACAAAAATATTTTCACTTTGAAGCATATATTAAACTATTAAAAGGATCCAGAAACACCAATAACCAAAGCTTCGGCGAATTGCAAATTAGCTTCATTCCTAATAAACTTTTAAGAAAACCAGCACAGCTGCTGAGAGAGAATAATATAGATATTGAAGATGTACAAAGTGAAAAATCTGAAGATGAAGATTGGTTTGCAGAAGAAATGGAAGTTGATGATACATTACCATCACCAGAAGCTGAAGATGAACCAAATGAAGAACCCGTACAGTTAATAATTAAATTAGAAAATATTGAGACTGGCGATTCATTGTTAGCGAGTGCAACTGAAAAAACTGGAGAGCCACTAGAGTCAACTATGAAAATAGAAGAAATTGATGAACCAGCACAGTCAACTGTAAATTTACAGTCTCAAGAAAAAAATCAAGTACAATCAACAGAAGAAACAATTAATATTATAGTACAACCGTTACAATTAGTTGAAGAACAACAAAACAAAGAAAATTTAATTTTACGAAAATTACTTGAATCACAAAAACAAAAAACAAGTAACTCTGACCAAATTTATAATGAACTTTTAGAACCAGTTTCGAATGAAGTCACTACAGTAAATACTTCATCTCATTCTGTAACTTATACAGACAATCAAAAAGAATCAATTACTTTCAAAAGAGGCGAACCCACTGTTAAAAAAAATAATTTCGAGTGTTCGATATGTCATAAAACATTTACCCAAAAAAGGACTCTAAAAACTCATCTAAAGCGCCATGCAAATATTAAAGATTATCCTTGTACGAAATGCGATAAAAAATTTGTAGACAATTGTGAATTAAAAGCTCACATAATGTCGATTCATCAAATTATTAAAAAATTTAAATGTACTGTTTGTAATAAGCAATTTTCAATTCAACGGCGATTAAGACTTCATATGAGGGTTCATGGACAAGATAGCTCTCATTTTGAATGTGTAATCTGTAAAAAGGAATTTACAGAGAAAGCTATTTTTGATAAACATATTAATAATCATTTAAAAGTTGCTCGATTTAATTGCACAATTTGCACTGATAAATTTTGTAGTGAACGTGATTTAAAAGCACATGTAAATAGTAATCATTTTGTATATAAGTGTTCTTTTTGTAAAGAAAGATTTACCCAGAAATTTACTTTACAAGAACATTCAAAAACTCATTTGAAAAATTTAAACTGTTCGGTGTGCGAAGAAAAGTTTAAAGATTATACCGATTTAAAAGAACATTTAGAAACTGAACATTTAGAAGAAATTAATCAATGGTTTTATGAATGTAACGCAATAAAGTGCCATAAAATTTTTGAAAATGAATCTGGGTTGAGAAAACATATTATGACTAAACATTTTAAAACTACAGATACTGAGTGTTTGATATGCAACGAAAAGTTTAAATTCAATCATATTTTAGAGAAACATATGAATAAACATGTCAAAATTGCGTCATTTACTTGTAAAACTTGTGATTTACCAATTGAAGGTAGCTACAATTTCAGAAAACATAAAGAATTTCATAAAACTAGTAAAGATTTTAAATGTTCTGTTTGTAGTAGACCATTCTCAAGTAAACAAATGTTAAGACAACATGTTTTAAATATTCATTTAAAAGTAAACGCTTTTAAATGTAGCAAATGTAAAGAGAGTTTTCCTTCTCAAAGTACTTATGAAAAACATCGAAATATTGTCCATTTGGGTATAAAAGCTTTTCAATGTACAATTTGTAGTAAAATGTTTGAATTAAAAAATTTGTTAAGGGTTCACATACGAAAAACTCATGATAATAAAGACTTTCATTGTATAAAATGTAATTCAAATTTTGATACACTAACTCTGTTAGAAAAACATAATAGTATGGTTCATTTAGATAACTGTTATCAATGTTTAATTTGCGAGAAAAAGTTTACAGATTATCACAATTTAAACTCACACGTTCGAATTCATGATGGTAAAAAACATAAGTGCCCTGTTTGCTCTGAAATATTTGGATATAAACGTGAACTATTACAGCATAAAAAAGAGCATAATGATTTAGAAACAAGAACTAATGCATTAGAGGAAACAGAAGACTCTAATTTATCGGAGGAAAATATCGAACCTACAATTGAAGAAAAGTTACAAAATAAAATCAGTTATGATTGTACCATTTGTGGAAAAATATTTGTATTTAAAAATCATCTTTCAGATCATATGAACAACATTCATCAAATTGTAAATTATTCTGCTGCTTCAAATGAAGAAAAAATAGTTACAAATATTCAACAAGAGCCCGAAACTGTTACTAAACAATTAAATAATGTAGCTATTGTAAATGAGAACGAAAATGTTGTTGAACAAGTAAAAGAAACAGTTGCTGATGATAGGTCAGCTATTCTTCCAGAGGTAAAGACTCTAAAAGAAACAAATGAGAATAAAATACCAATTCATATTATTCCTACACAAAGTTAA
- Protein Sequence
- MCLKSYNRFNEFIILLNGRERGVKQRFKNLQINFGLNNFLNSKPVQLKPSTDFNIKQEIQDILFDDSDDEDIEDWFAKEMEIEDSLPPIKPKDEEWKDSMISSIKSEVYLLLLEAEKQEVIKDPELLPEKTEDGQHFEEEIKSENLEGIEDLLSEKIEIVDHLLPEKIEEELTLPKEEPEKMEETLQLFEKEVQSTEEIEEPEKMEETLQLFEKEVQSTEEIEEPEKMEDSLQLFEKEEKNIEYQVQSTEETELEETLSPEPEKNEQEKKIEPLQPVEIQEGEIEDQIQSEEKAKEIVGPLPLLHQEQQINKDKIIIKLVSQKVKVQDDNSTKKPVALRIENFQCLTCNKKFPSNADLQNHLKADHIFNPFTCTICNKKFQYKKSFDTHVKRHSGTYKCADCTKVFHNISSLRNHIDKCHKYECTKCKEIFSHKVYLEMHMYTSHELLVCSKCDQIFANFSEFKQHTDTSHVFIPTPEPAWFECSVCKLKFTDKSFLEIHTNLYHLKFECSKCKKRFANASLLKEHMIIHLNFKCTLCSQAFDNYLDLEQHKKEHIGCSMCEQIFVDKSILKRHINDVHLKFECSKCKKRFANASLLKDHMIIHSDYQCITCDLIFANYSDLEQHFALSHFGCLTCTRKFANQAIFVRHMNVVHFKFECSKCKKRFLTTTLLQEHMHMNSHFACKLCNRNFTNYPDLEKHLKTPHMEETLFLNIYLSCTICKEKFLDIQVLKNHMNNVHLKFECTKCKKRFLNETLLQQHMQLENACSTEVKLNDIQSIPTQNSTENTVSKLRNTPLKFDCSAESELDAPIYICCTCQKPFLTFYSFKKMCIQKYFHFEAYIKLLKGSRNTNNQSFGELQISFIPNKLLRKPAQLLRENNIDIEDVQSEKSEDEDWFAEEMEVDDTLPSPEAEDEPNEEPVQLIIKLENIETGDSLLASATEKTGEPLESTMKIEEIDEPAQSTVNLQSQEKNQVQSTEETINIIVQPLQLVEEQQNKENLILRKLLESQKQKTSNSDQIYNELLEPVSNEVTTVNTSSHSVTYTDNQKESITFKRGEPTVKKNNFECSICHKTFTQKRTLKTHLKRHANIKDYPCTKCDKKFVDNCELKAHIMSIHQIIKKFKCTVCNKQFSIQRRLRLHMRVHGQDSSHFECVICKKEFTEKAIFDKHINNHLKVARFNCTICTDKFCSERDLKAHVNSNHFVYKCSFCKERFTQKFTLQEHSKTHLKNLNCSVCEEKFKDYTDLKEHLETEHLEEINQWFYECNAIKCHKIFENESGLRKHIMTKHFKTTDTECLICNEKFKFNHILEKHMNKHVKIASFTCKTCDLPIEGSYNFRKHKEFHKTSKDFKCSVCSRPFSSKQMLRQHVLNIHLKVNAFKCSKCKESFPSQSTYEKHRNIVHLGIKAFQCTICSKMFELKNLLRVHIRKTHDNKDFHCIKCNSNFDTLTLLEKHNSMVHLDNCYQCLICEKKFTDYHNLNSHVRIHDGKKHKCPVCSEIFGYKRELLQHKKEHNDLETRTNALEETEDSNLSEENIEPTIEEKLQNKISYDCTICGKIFVFKNHLSDHMNNIHQIVNYSAASNEEKIVTNIQQEPETVTKQLNNVAIVNENENVVEQVKETVADDRSAILPEVKTLKETNENKIPIHIIPTQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -