Pnig006210.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- -
- Assembly
- GCA_947425015.1
- Location
- OX380348.1:13210954-13220178[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4 6.7e+03 -1.6 0.0 28 39 111 122 91 124 0.65 2 2 3.3e-07 0.00041 21.5 0.1 3 39 246 282 244 287 0.91
Sequence Information
- Coding Sequence
- ATGGATGGTTATAGTACTGCTGAATATGCAGATATGATTTTTATTTATGGATTATGTAATGGTAATGCCTATTATGCGTCCAGAGAATACCAAGACAGATATCCAAATAGACGCCAACCTTCCCTTCGCCTATTTGCGCGCATTTTTCAGCTTCTACGTGAAACTGGATCAACAACTATACGGAGAGGTGTACAAAATGATGGCATTGCTAAAAAAAAAtctaaggacttattgaacgaccctcgtaACGTTGAAGATGAAGAGAATGTAATTGATGCTGTTCTCGATAATCCTGAAATCAGCACAAGACGCATCGGTGCTCAATTACACATGTCTCACAGCACTGTTTGGCGGATATTAAACCGCATTAGAAATGAACAGGAACCATTTATATCTGGTCCAGGTGAAGATTTCGTGTTTGTCGGCCAGACATTAGAGTTGTGCTGCACTGCGCGCGTGTACCACAACGTCCCCGATGACGCGCTGCACTGGACACGTCCGAATCACTTCATTTCTAATCTATTCTTCACTGATGGAAATAATATTGCACGCACGTTTCTACAAAAGATGGCAGATTTTGAAACGATACTCGAAACGGAACTAGTGCTGCCATCTTTGGGTCATTCCGAGAACTTTACAAATGACCTTCATAGATTCGTTGTTAGAGAAGTGGGCGTGATGCATGTTGCATTGATTTCGGCAATTATGAATCACAAAAGAGCATTATGGTTAGAAAAAGACCTGGTGGCAGCGGTTCGTGCAGTACAAAGAGGGATTCTAAATATGTATGCGGCAGCAGAGAGGTATAAGATCCCTAGAAGAACAATTAGAAATCATCTCAAGAGTGGCAGTTTGAAAAAATCACTGGGTCGAAAATCTATACTGAACGAAGAACACGAAGCTGATCTGGTAAGCAGGATAGTCAGATTTGCTGAAATAGGACTGCCAATGACACCACGAATCATTCGTCGTGTGGTCTACAAGTTTTTCGAACTTAGTAACTTTAAGCACAATTTCAACAATAACACCAAACACGCTGGTAAAGACTGGCTTAAAGCATTCATGAAAATAAATTCTATGATTTCTAAAAGAGAAGCTCAGTTTATGTACCCCGATAGAGATCATAAACTTAACAAATATATTGTTGGTGATCACTTTGCAAAAGTTTGCCGACTAACGATTCACCATCAACAGACTGTTCTGGCACACAAAGGAGCCAAGCGAGTTCATTTACAAAAATCGGTACACGCAGAAAGTGTCACCATTGCGGGATGTGTAAACGCACTCGGTACTGCAATACCACCTATGATCATTTTTAAAGGCAAACGATTGAAGCCAGAGTTGAACGATAACTTACCAGTGGGAACGAAAAAAAGTTTGGATTCGTCGGAATCGTCATCATCAGCAAACGTTCAGCTCGACCAAACACTAGTCAAACGTACTGGAAGAAGCTATTACCGCACGGTTTATTCTTCTGATTCGGGTGATGATGCTCATAGTAATGTGTCCCTCTCCCAACTGATAGAAAGAACTTATTTTCATGAACTCATGCCTACACTAACAAAAGCAATAGATAGAACACCGACTATACAAAAAAAAGCAATAAATTACAGAAGAACGCCAGTCACAAAAGACCTTTTTGACCGAAATAATATAAAAGAAAAGTGTGCAAAATCTGACACTAGAACAAATGCTGATACTTCACAGATGGAAACAGGATGGTATTGTCACGGATGTGAGGAGAATAGGATGGCCGATATGAGACAGTGCACCACATGCGGCAAATGGTATCATGAGGAGTGCGTCGGTTTATCAGCTGAAGATCTTGATGCCTTTGAGTGTCCTTATGGTTGTTAG
- Protein Sequence
- MDGYSTAEYADMIFIYGLCNGNAYYASREYQDRYPNRRQPSLRLFARIFQLLRETGSTTIRRGVQNDGIAKKKSKDLLNDPRNVEDEENVIDAVLDNPEISTRRIGAQLHMSHSTVWRILNRIRNEQEPFISGPGEDFVFVGQTLELCCTARVYHNVPDDALHWTRPNHFISNLFFTDGNNIARTFLQKMADFETILETELVLPSLGHSENFTNDLHRFVVREVGVMHVALISAIMNHKRALWLEKDLVAAVRAVQRGILNMYAAAERYKIPRRTIRNHLKSGSLKKSLGRKSILNEEHEADLVSRIVRFAEIGLPMTPRIIRRVVYKFFELSNFKHNFNNNTKHAGKDWLKAFMKINSMISKREAQFMYPDRDHKLNKYIVGDHFAKVCRLTIHHQQTVLAHKGAKRVHLQKSVHAESVTIAGCVNALGTAIPPMIIFKGKRLKPELNDNLPVGTKKSLDSSESSSSANVQLDQTLVKRTGRSYYRTVYSSDSGDDAHSNVSLSQLIERTYFHELMPTLTKAIDRTPTIQKKAINYRRTPVTKDLFDRNNIKEKCAKSDTRTNADTSQMETGWYCHGCEENRMADMRQCTTCGKWYHEECVGLSAEDLDAFECPYGC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -