Pnig016290.2
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- lolal
- Assembly
- GCA_947425015.1
- Location
- OX380338.1:33837438-33843013[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-15 1.2e-12 48.8 0.0 2 45 390 434 389 434 0.95
Sequence Information
- Coding Sequence
- ATGACTACAATGCAGCAGttttgtttgcgatggaacaaccatcaaccaaatttcatttctgtattctcaagtcttctcaacagtgaatcactagttgatgttactctagctgctgaaggaagacatttacaagcacacaaagttgtattgtcagcatgtagctcatattttcagtcattgtttacaataaatccatgtcagcatcctatagttatattgaaagatgttaaatttatagatcttaaagttatggtagactttatgtattacggcgaagtaaatgtttcacaagaacaattgccacacatattaaaaacagcagagatgctaaaaatcaaaggcttagccgaaatgcCAGACTCAACTTCACTCACCAAATCGCAGAGTAGCTCTGTCGAAAGGCCAGAGATTTTAACACCTGGGGACTCCAATTGGAGTTCTGACGCACAAAGGAGGTCGTTATCTCCATCTTCTTGCCCTTTGTCACCAAGTTCTCGGAGAAAACGTTTAAGAAAATCATCAACAGGCTCAGGTTCAGGATCAACAGAACGCACATCGGAAGACCATCCAAACGAAGCACATATAACTTCACCCAGCGGTAGTATAATTAGCACACATATTAAACCTGATCCAGGTTTTATATCAGATTGTGGCACACCTTTGCGGACTGTGAAGCAGCAACACAGTAGTGATTCAGAACCTCATCGCGATAGCTCACAAGAAAGTATTGAAGGAGAGACACCGCATCAAATTACCTTGCAAATACCACAACAGTCCGATGTGAATATAGTTCACAACATGGAACAAAATCCTATCGATATGGCTGGGCCATCAACGTCATCAGGGTGTACACAGCCTTCTGTTGCAGGGTTGCAATGGGCTTTTCTGGAACACACCTATCATCCTCGATTCGCACTTCCCTCATGCCATACGAACATGACTCTCCCACCTGACGTACAGTACAATATGGCGGACGAATCGCTACCGTTGTCAACCATAAATGCTGAAAATGTGCAAACGCAGACCAACTCCGCAGCTAGTCCGTGCAACAGCGTCTGTCAATCTCCACCGAGCTCATCTCCGCCACCGATGATGCCTCCCATTATTCACGGACAAACTCCCATTACTGTTCCAATTAAAAGAAAACGTTCGATTAATCCACAAGCTGATGAGAATTTCGTGAAAGCTTTGGAAGCGGTTAGATTTGGAGGAATCGGTTTCTGCAAGGCAGCGAGGATGTTTGGAGTAAATAACAGGACTTTATGGTTGGAATACAAGAAGCGAGGATATCCTATCAGTAGACTGAGTATCAAGAACAGAGTTCCCAAACTTGAAAACGCATCTTCCTCAGATCAAGCACAGCAGCAACCGCAAATTGCTCATTCTTCCAATAAAATAACAGTTCAGTCAGGATTAATCGGTCCTAAACGTGGAGGCAGACTTCTCATGCGCCAACCTCGCGTGAAGAAAGAATGTGATCCGAACCAGACTTCACCGGAGGTTGATCCACTCGCACCGCAGTTTCTGACAGTACCGCATGCGAGAATGGAGCGCCAATGTTCGGAACCCATGCCGACGATATCTCCTCCACCGTTAAACCTTCTCACTGTTCCCGGCACAGGAATATTGGTAAAGCAGCATTCGCATCCTCTTTTACCCAGTCAAATACAAGCGAGATCTTCAACTCCATTACCAGGATCGTCTGCACCTTTACCTGTTCATTTTTTGGTACCAACTTCTAACAGTGGGGAAGCAGAACGAGCTATAAGTCCAGTTGTAATAGTCACAGATCCTCTATCTACCTCAACAGAAACTCCTATGAGAGCTGATAGTGCAGCAACTGCTACACTTCGAGTACGCACAGAGGAGTTAAAACGATCTATTTCATCACCACAGACTGGCTCCCCGCGATCGAGTCACTGTCCAGTGGTGCGACAAGGACCGGCATTAGGATGTAATTTTTGTTGGAATACAGTCGACGCACACGGAAGAATTTTAAGAAGAAAAACGAAATATCATTGTCCAGAATGTCAGACTAACTTGTGTATTGTTCCTTGTTTTCAAGAGTATCATGAGCGACATAACAGCGGGGGTACGCACACAGACCCGATAGCGTTAACGTCGTCAGTAATGCGAGTCTTTCCAAAAACTAGTTCCATGTAA
- Protein Sequence
- MTTMQQFCLRWNNHQPNFISVFSSLLNSESLVDVTLAAEGRHLQAHKVVLSACSSYFQSLFTINPCQHPIVILKDVKFIDLKVMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPDSTSLTKSQSSSVERPEILTPGDSNWSSDAQRRSLSPSSCPLSPSSRRKRLRKSSTGSGSGSTERTSEDHPNEAHITSPSGSIISTHIKPDPGFISDCGTPLRTVKQQHSSDSEPHRDSSQESIEGETPHQITLQIPQQSDVNIVHNMEQNPIDMAGPSTSSGCTQPSVAGLQWAFLEHTYHPRFALPSCHTNMTLPPDVQYNMADESLPLSTINAENVQTQTNSAASPCNSVCQSPPSSSPPPMMPPIIHGQTPITVPIKRKRSINPQADENFVKALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKRGYPISRLSIKNRVPKLENASSSDQAQQQPQIAHSSNKITVQSGLIGPKRGGRLLMRQPRVKKECDPNQTSPEVDPLAPQFLTVPHARMERQCSEPMPTISPPPLNLLTVPGTGILVKQHSHPLLPSQIQARSSTPLPGSSAPLPVHFLVPTSNSGEAERAISPVVIVTDPLSTSTETPMRADSAATATLRVRTEELKRSISSPQTGSPRSSHCPVVRQGPALGCNFCWNTVDAHGRILRRKTKYHCPECQTNLCIVPCFQEYHERHNSGGTHTDPIALTSSVMRVFPKTSSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00768031;
- 90% Identity
- iTF_01225951;
- 80% Identity
- iTF_01275505;