Basic Information

Gene Symbol
nfxl1
Assembly
GCA_012977825.2
Location
Scaffold:741819-747339[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 2 1.8e+04 -4.8 1.9 15 19 43 47 43 47 0.85
2 17 0.11 9.3e+02 -0.0 0.3 4 10 78 84 77 84 0.96
3 17 1e-08 9e-05 22.4 16.7 1 19 92 109 92 109 0.99
4 17 0.001 9 6.4 13.2 3 18 147 162 144 163 0.94
5 17 0.41 3.6e+03 -1.9 0.2 6 10 188 192 187 194 0.88
6 17 0.00011 0.97 9.5 9.2 1 19 198 217 192 217 0.89
7 17 0.00011 1 9.4 9.1 1 18 253 270 253 271 0.97
8 17 0.0059 52 4.0 7.6 1 12 305 316 305 316 0.94
9 17 0.41 3.6e+03 -1.9 1.0 6 10 326 330 325 330 0.92
10 17 7.5e-08 0.00067 19.6 14.6 1 19 336 354 336 354 0.93
11 17 0.00062 5.5 7.1 7.6 9 19 402 412 400 412 0.90
12 17 0.0005 4.5 7.4 6.8 1 12 422 432 422 432 0.95
13 17 0.74 6.6e+03 -2.7 5.8 14 18 463 467 463 468 0.89
14 17 0.00012 1 9.4 5.9 1 12 504 515 498 515 0.91
15 17 0.68 6e+03 -2.6 1.7 6 10 540 544 539 544 0.88
16 17 0.00099 8.7 6.5 14.3 3 19 553 569 552 569 0.92
17 17 1.9e-05 0.17 11.9 11.1 1 16 614 628 614 633 0.95

Sequence Information

Coding Sequence
ATGCGTCACCAGCATATTTGGAGTTGTGCAGAATGTTTCACTTTTATGCATTTACCTTGCATTCAACATTGGGTGAGGGATAGTTTGAGTTCTAAACATGAGAAAGGAATTATACCATTGTGGGGATGCCCTAAATGCAGAAAAGAATATAGAGAAGATCAAATACCAAAAAAATATACATGCTTTTGTGGAAAAACTGAAGATCCACCATATCAACCATGGTCGATTCCTCATTCTTGTGCGGACATATGTAGCAAGTTTCTTTTACCAAAATGTGGACACAAATGCATGCTTCTATGTCACCCTGGTCCATGCCCCCCGTGTCCAAAAATGGTGTCAGTTACCTGTTTCTGTACAAAACAATCACTTTGCCCACGGAGATGTAATGCAAAAGAGTGGTCCTGTGGAATAGTTTGTAATAAAAAATACAAAACATGTGAACATGCATGTGTTGAAAATTGTCATCCTGATCCTTGTCCACCTTGTGTAAAAAAAGTGCTCACAGCCTGCAATTGCAACAATAAATCTGAGTTAAGAAAATGTAATGAATCATTTTGGCAATGCAACAAAGTTTGTGGAAGACGTTTCTCATGCAATGTTCATATTTGTGAGAACTACTGTCACAAATCTGGAGATTGCAATACTTGTCCATTAGAACGTAATAGAACTTGTCCTTGTGGTAAGAAAAGATATGCTATAACATGCAAACAGCAGCAAGTACCAACATGTGGAGACACTTGTGGAAAATTATTGGATTGTGGAGCTCACTATTGTAATATGAGATGCCATACAGAACGTTGTGGCCAATGCTTAGAAGTTGTAACAAAATCTTGTCGTTGTGGTAGTTTTAGTAAAGAACTTTCATGTACTAAAGAATTTCACTGCAATAAAAAATGTTCTCAAGTAAGACTTTGTGGTAGACATCTTTGCAATAAAAAGTGCTGTGATTGTTTGATTAATAATACTTTTAAGGCCTGTGAAAAGGTATGTGATAATACTCTAAACTGCCGCAAACATAAATGCTCTGCTCCTTGCCACAGTGGACCTTGTTACCCGTGTCCTCGTACTATTGTTATTCAATGTCGTTGTGGCAATAGCAAAATTACTGTACCATGTGGAACACTTAAGAAGATCAAACCTCCAAATTGTAACAAGATGTGTAAAATTCCTCCGATTTGTCATCATCTAAAAAGAGAGTCACACAAGTGTCATCAAGGTGTCTGTCCACCTTGTCGTAAAACATGTAAATTAACTTATAAAAGATGTGGTCACGCTTGTCAAGTAGTGTGTCATACTAAAGTTTGGACTAAAGTGAAACCTAATGGAGTTACCAAACCTATTGGACCATGGGAAAATCATAAAGAAAGATGGGAATATCAGTCCTTCCCATGTCCTCCTTGTGAAGTCTCTGTAATGGTCACATGCCTTGGAGGACATGAAACTATGCCTTGGCCTTGTTACAAAGCTGTTTCAACTTCTTGTCTTAGAGAGTGTGGACAATTATTGATGTGTACAAATCATTATTGCGAAAAACTGTGTCATAAGCTAAACTCATTGGATGGCGACGATGATGATGATGATGATGATGATAATGATGATGATAATAAGTGTATGGAATGTGAAAAACCATGTAGTTTTCCAAGACCAAAGGGATGTACACATGCTTGTCCTAAATTATGTCATCCTATTCCATGTGAACCATGTAAACAGCTAGTAAAAATTTATTGTCACTGTGGAATCAATACTCTTTATATACGCTGTGTTCAACTCACTTCTGCCACCACTGATAGACGCAGTGAACTTCTACAATGTGGAAATCAGTGTCCCCAAAATTATCCCTGTGGACATCGATGTACTAATAATTGCCACCCTGGATTATGTCAAAAAGCTGAACTTTGCAATAAGAAAGTTAAAATGTTTTGTAACTGTAAAAGATTAAAAAAAGATTTTTCTTGTAACATAGTACGAGCTGGAAAAGCTTCTGTGGAATGCGATAACTTATGCCAAAAGAGAAAAGAGGAATTGCATAAAATAAGAGAATTTGAGTTAGAAAAAAAACAAAAAGAGGAAGAACTAAAAAATTTAAAGGAAATCGAAATGTTTGAGAAAAAATTTAAACCGAAACGAAGAGGAAAAGAGCGTCATCTGAATAAAGAGCTCTTAAACAATAAAACTGGCTCTC
Protein Sequence
MRHQHIWSCAECFTFMHLPCIQHWVRDSLSSKHEKGIIPLWGCPKCRKEYREDQIPKKYTCFCGKTEDPPYQPWSIPHSCADICSKFLLPKCGHKCMLLCHPGPCPPCPKMVSVTCFCTKQSLCPRRCNAKEWSCGIVCNKKYKTCEHACVENCHPDPCPPCVKKVLTACNCNNKSELRKCNESFWQCNKVCGRRFSCNVHICENYCHKSGDCNTCPLERNRTCPCGKKRYAITCKQQQVPTCGDTCGKLLDCGAHYCNMRCHTERCGQCLEVVTKSCRCGSFSKELSCTKEFHCNKKCSQVRLCGRHLCNKKCCDCLINNTFKACEKVCDNTLNCRKHKCSAPCHSGPCYPCPRTIVIQCRCGNSKITVPCGTLKKIKPPNCNKMCKIPPICHHLKRESHKCHQGVCPPCRKTCKLTYKRCGHACQVVCHTKVWTKVKPNGVTKPIGPWENHKERWEYQSFPCPPCEVSVMVTCLGGHETMPWPCYKAVSTSCLRECGQLLMCTNHYCEKLCHKLNSLDGDDDDDDDDDNDDDNKCMECEKPCSFPRPKGCTHACPKLCHPIPCEPCKQLVKIYCHCGINTLYIRCVQLTSATTDRRSELLQCGNQCPQNYPCGHRCTNNCHPGLCQKAELCNKKVKMFCNCKRLKKDFSCNIVRAGKASVECDNLCQKRKEELHKIREFELEKKQKEEELKNLKEIEMFEKKFKPKRRGKERHLNKELLNNKTGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01190905;
90% Identity
iTF_00286886;
80% Identity
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