Ppup011955.1
Basic Information
- Insect
- Pteromalus puparum
- Gene Symbol
- -
- Assembly
- GCA_012977825.2
- Location
- Scaffold:714669-722817[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.2e-05 0.0058 17.0 0.9 2 21 379 398 379 399 0.94 2 13 0.88 82 3.9 0.4 1 23 406 429 406 429 0.96 3 13 1.3 1.3e+02 3.4 0.5 2 12 484 494 483 498 0.88 4 13 0.067 6.3 7.5 5.4 1 23 546 569 546 569 0.97 5 13 0.00034 0.032 14.7 0.2 2 20 579 597 578 599 0.93 6 13 0.031 2.9 8.5 4.0 1 23 606 628 606 628 0.99 7 13 0.12 12 6.6 7.3 1 21 718 738 718 739 0.94 8 13 8.1e-05 0.0076 16.6 1.6 1 23 747 770 747 770 0.93 9 13 0.2 18 6.0 1.0 2 21 781 800 780 801 0.95 10 13 0.0038 0.36 11.4 5.3 2 23 810 832 809 832 0.96 11 13 0.34 32 5.2 0.2 2 20 911 929 910 931 0.79 12 13 0.0003 0.028 14.8 2.2 1 21 975 995 975 996 0.95 13 13 3.5 3.3e+02 2.1 0.6 1 13 1003 1015 1003 1017 0.84
Sequence Information
- Coding Sequence
- ATGCCAACCCGTCAACAAATTAGTCGAAATTTAGTTACCAATATAAATATAGATGGTGAACAAACAAATGAGGATGATTTTGAATCATCAGAATCGAGCAGGAATGTACTTGGTAAACCAGAAATTTTACAAAGTACTATACAGTATATCACAAACGTTATGGATTCTGAAGACGATGAAGAAATAGATGTTGTCAACATTGATGAATATTTAAAGTCACCAAATAATGGGCTATCAGATGGCAATCTCACCATCAATAAATCTAAAATAGAAAGCAAAGCATGTTCTAAAGAAAGTATCAATGATGTCAAAGAATTAAAAACTATTGAAAACTTATTGGAAGACAGAGTGAGAAATCACAAAAGTGTTAATGCTTCAGATAATGTATCCAGCCAAAAAAGTTATTTTAAAACATGTACCACATTACAAAATAATAAATTATATAATCACAATTCAATTTGCAAAGAAAACAAATCTGTGATGAATGTTAAAGATACTAATAAATTAAACAATAGTAATAAAGATACTACTGTAAAAACAATAAATGATGAGGAATTTTTAAAGTCGATTACTGTAAAAGTAATTTTATATCGTAATGATGTAGATAATTATTTAAAATCTAAACAATTAATTAGTGAAACAGGAATGTCAAACTCAAGCAAAGTTAGTAAGATTTTCAACAACAATGACACTTTGAACATTGCCAATCGAAAACGAAATACTAAAAAAGCTCTAAAACAGACAACAATGTTACAGTTTTTTAATATTAAACCTGTAAAAGAGACTAAATCCCTTCATAGTATAACTAATGTTGATAAAAATAATAAAGATTCTCTAGATAAATCAGTGGGTAATAAAGAAACAACAACAATAAAGGTTACAAGCAAAGTTAGTGAAACACCTGCAATAAAACCTAAAACATTTCATCATGCAATAGAAAAGTCGAGATTGGAATCATTTGATTATTCCTCATCAAAAATGACTGATACACTTAATTTAAATACTTCCAAGCCTACGAAGAAGGCAACATTTATGTATTGCAACGACTGTAATTATAAGACTGACAGAGGTAAAACATGGATTTTCCAGCATATTAAGAGCAAGCATACCAATGGATTTATAAATGAGATTGCAAAGTGTCAACAATGTGGTAAAAAATTTAAAAAAGCTTCTCTGCTAAAATTACATCAAGCTACATGTAAAACTTTACCTCATTTTGTGTGTCCGTTTTGTCCTTCAAGAATTAAATATGGCAAAAATATTAGGACGCATTTACTAACACAGCACAAAAGTGACTTTCAGCCAAATGAGTTTAATGATATTTATCGCAAAATTGTCAATAAAGGAAAAGCATTCAAAGCTAAAGCACCCAAGTTGGCTTTTGAAGGAAGAAAAATTTCTAAAATGAAGCAAGGAAAAAAAAATACTATGAAGAATAAGATTGATCTGTATTGTACTGGTTGTAATCAATCATTTGTCAGAGATCATAAAAAAAAAAATAACAGAATCAAAATGTGTCCAAATTGTGATAAATTATTGCAATGCCAGTGTGTAAAATGCAAAAAAGTATTACAATCATATGAAAGTTGTTGGAGGCATATAACAGCTGTATGTGAACCACAAGATTTGAAAATTTTTCATTGCAATGACTGTAGCTATACATCTTTTGATAAACATAAACTTGTTACCCACATACAGCGAATGCATACTGAAATTGATCCAAAAGATTATGTTAAATGTCCAAACTGTGGTAAAGGATTTAAAAATCAAGCTTACATGAAGTATCATGAAAAAGCATGTGGAAGATCTAAGGACTACCAGTGTCAGTTCTGCTCTTACAAAACTAAATATATTTATCAATGGAATAAACATATTAAAAAGCATGCAATGCATTCAAAAGACGAAAATTTAGCCTTCAACGTCAGTAGTGAAATAGTCAAATCAACTCAAAATAAAATAAAAATGCACAGTAACGTAAATTATAACAAAGTTCAAATTATTGGACCAAACTCCATTGAACGAGAAAATTTGCAAGAAAAGACTTTGAATAATCTAAAGCTAGCGACATATTTATGTCTCAAATGCAAAGCCGTTGATCCATCAACCTCTGTCAAGATGATCAATTGCAACAAATGTCAAGTGCAAATGCGTTACTGCTGCAAGTCGTGTAATCGCATATACTCAACATGGGGTCACTTTTGTCACCATCTACTTCAAAAATGTGCTACACCAAGTAATTATCAGTGCGAGCACTGTGATCGGCAATTCACAATAAAAGATAATGTACGTCGTCATATTTTTGCTGAGCACATGACTGAGGTTGATGCGAATGGTAATGTTAAATGCCCAAAGTGTAAGAATAATTACAAAGGCAGACAAAATATGCTTAAGCACAAACGTCTTTGTGGTCAAGTAGAATTACATCTTAAGTGCAAATTTTGCAATATAAAGTCAAATTATAAACACAATCTTAGAAAGCATATGCTACGACAACATGCAAATTTGAGCCGTGTGGAGGTTGAAGATGCACTTAAGGAGACAGTTGAAAAAGCTAATAAGAAAAATAAAGGAACAAAAAAAAATGAAGTAGCCAAGTCTATAAGTAATACATCAACCAAAGAGAGAAAGAATAATTTGAAATTGGTGCCTACAAATAAAAATGGTTTCCATATTATTTCTCTCATAATGAATAAAACAGAAATTATGGATACACAGCATTTGATCCTGGTAAAATGTCCTGGCTGTTCCAAGTCTTACACTGTTGACAAGAAAAGAAAAGGCCATATACTTACTAGGTGTTTTTATTGCCAAACCAACAATATTTTCATATGCATACAGTGTTCCAAAGAGTACTTAAGGTTATTTCATATACGTAGACACCTGAAACGTGAGCATCTTTTGGATTCTGATGACCGTCTGTTACATGAATGCAGTAATTGTCAAAAACGTTTCACATTTTATGAGAATCTCAAAAATCACTGGCGTTTGTGCTTCAAGACTGATAATTTTATATGTGATTATTGTGGCTTTGCTACCAAGTACAAAGAAGAAGATGTTACAAGTACTTCCAACAGTGTTGCAACAACCAATGAAGCAGAAGGTTTTGATGTTTTGGTTAGTAATGAGGATGTAAAACCCAATGATACTTGTATCAAGAATTTGCTTGAAAAAATGGATCGCTTAAAAGTGAACTTTTATGAACTGGAAAATTCCCTTTTCATAAGGAAAGAAGCCAATAAAGTAGAATTCTGCAGGAAGAACTTAACTTCCATCATTGGTTTGATTGAGAAAGTTAGTAATTATAAAGCTTTATCCTATTTTCCAACCATCATGTTTAAGGCGTTGGAATGCACGTGCAAAACACTTTGTGGTATAAAGGATCAACTATCACAACTGAATGTCAAAGCTACAAATGCTATTATTAAAATTAATGGCATTATAGATTATGCGCATAATCTCAAAAGGAATATCGTTCGCACACTTAATGAGCAAGAATTTAAGCCTGAAATTGAGGAAGATGACTGCACTGTAGTATGCGAAATAGAATATTCAAACACTGTAAATGACATTAAATCCGAAATTATTGATATTTTTTCTTCAGATTCTGAATCTGAAGTATCAAACGATAAAATGATGTTGAAGAAAAAAGTCGTTAAATTAGATCGACTGAAAGATATCGAGACAACTCTACCTCAAACTGAAGCATCAACTTATAGTTTAGCTCACAGAGATAGTAGTGATACTGATGACAGTATTGTTGATAATAATACAGATAACAGTAGTCAAGGATCTAGTGATCCATCATACCATCCTTCTGATAGTGTGACAGATGACTGTTTAAATTTTCCAGTTATTGATTGCAGCTGTGAAAAGTCACAAAAAAGCAAAAGGCATATGCCGTTGAAACGGAGACTCATGATTGACTCTGACTCTGATGAAGCTGAAAGAGCAATATGTTTCAAACAAAATATTGTATCAAGAAAAGAAAAGACACCTTGCCAACGACAAAGAGTTTCTGCTTCAAACAAGCAATTGTTAGCCAAATTAAGAAAAACACTGACAGATACATCAGAGGAGTCTGATAATACTGCAGTCAAAATAAAGACACCAGCAGTGGAAAATAAAAGAAAGTCACCACCAGTAGGAAATAAAAACAAGACACCACCTGTCAGAACTTCAAAAAGAATCAAAACCCCAAGTCAAATTTGCTCTAATAGTCATTGTAAGGTAGACAATTCTATTAAAGATTGTAGCTCTGGTTGGGATCATGTTCATCAACTGCCTCGGAATAAATCTTGTGAACCATGTGAACAATCAGATGAATGGGACTACTCGGATGAAAGCGAGTCTGAAATTACTGATTTATGGCAAATACTAGATGGAGAACTTCCAAAATCTCAAGCAATATCAGAAATAAAAAGGGAGCATAAATTAGCATTGCTAGGGATTCGTAGAATCCTTCGCAGTTTGGTCAATTGTTGA
- Protein Sequence
- MPTRQQISRNLVTNINIDGEQTNEDDFESSESSRNVLGKPEILQSTIQYITNVMDSEDDEEIDVVNIDEYLKSPNNGLSDGNLTINKSKIESKACSKESINDVKELKTIENLLEDRVRNHKSVNASDNVSSQKSYFKTCTTLQNNKLYNHNSICKENKSVMNVKDTNKLNNSNKDTTVKTINDEEFLKSITVKVILYRNDVDNYLKSKQLISETGMSNSSKVSKIFNNNDTLNIANRKRNTKKALKQTTMLQFFNIKPVKETKSLHSITNVDKNNKDSLDKSVGNKETTTIKVTSKVSETPAIKPKTFHHAIEKSRLESFDYSSSKMTDTLNLNTSKPTKKATFMYCNDCNYKTDRGKTWIFQHIKSKHTNGFINEIAKCQQCGKKFKKASLLKLHQATCKTLPHFVCPFCPSRIKYGKNIRTHLLTQHKSDFQPNEFNDIYRKIVNKGKAFKAKAPKLAFEGRKISKMKQGKKNTMKNKIDLYCTGCNQSFVRDHKKKNNRIKMCPNCDKLLQCQCVKCKKVLQSYESCWRHITAVCEPQDLKIFHCNDCSYTSFDKHKLVTHIQRMHTEIDPKDYVKCPNCGKGFKNQAYMKYHEKACGRSKDYQCQFCSYKTKYIYQWNKHIKKHAMHSKDENLAFNVSSEIVKSTQNKIKMHSNVNYNKVQIIGPNSIERENLQEKTLNNLKLATYLCLKCKAVDPSTSVKMINCNKCQVQMRYCCKSCNRIYSTWGHFCHHLLQKCATPSNYQCEHCDRQFTIKDNVRRHIFAEHMTEVDANGNVKCPKCKNNYKGRQNMLKHKRLCGQVELHLKCKFCNIKSNYKHNLRKHMLRQHANLSRVEVEDALKETVEKANKKNKGTKKNEVAKSISNTSTKERKNNLKLVPTNKNGFHIISLIMNKTEIMDTQHLILVKCPGCSKSYTVDKKRKGHILTRCFYCQTNNIFICIQCSKEYLRLFHIRRHLKREHLLDSDDRLLHECSNCQKRFTFYENLKNHWRLCFKTDNFICDYCGFATKYKEEDVTSTSNSVATTNEAEGFDVLVSNEDVKPNDTCIKNLLEKMDRLKVNFYELENSLFIRKEANKVEFCRKNLTSIIGLIEKVSNYKALSYFPTIMFKALECTCKTLCGIKDQLSQLNVKATNAIIKINGIIDYAHNLKRNIVRTLNEQEFKPEIEEDDCTVVCEIEYSNTVNDIKSEIIDIFSSDSESEVSNDKMMLKKKVVKLDRLKDIETTLPQTEASTYSLAHRDSSDTDDSIVDNNTDNSSQGSSDPSYHPSDSVTDDCLNFPVIDCSCEKSQKSKRHMPLKRRLMIDSDSDEAERAICFKQNIVSRKEKTPCQRQRVSASNKQLLAKLRKTLTDTSEESDNTAVKIKTPAVENKRKSPPVGNKNKTPPVRTSKRIKTPSQICSNSHCKVDNSIKDCSSGWDHVHQLPRNKSCEPCEQSDEWDYSDESESEITDLWQILDGELPKSQAISEIKREHKLALLGIRRILRSLVNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -