Ppup011958.1
Basic Information
- Insect
- Pteromalus puparum
- Gene Symbol
- -
- Assembly
- GCA_012977825.2
- Location
- Scaffold:729868-736785[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.064 6 7.5 0.4 1 21 172 192 172 193 0.94 2 18 0.00019 0.018 15.4 0.5 1 22 240 261 240 261 0.93 3 18 0.02 1.9 9.1 1.4 2 19 304 321 303 323 0.95 4 18 0.022 2.1 8.9 2.3 1 23 330 353 330 353 0.98 5 18 0.019 1.8 9.1 1.4 1 23 432 455 432 455 0.97 6 18 0.003 0.28 11.7 0.5 1 22 460 481 460 481 0.95 7 18 0.0011 0.11 13.0 3.2 1 23 488 511 488 511 0.96 8 18 0.00073 0.069 13.6 0.6 1 20 518 537 518 539 0.94 9 18 0.024 2.2 8.9 0.7 1 23 786 809 786 809 0.97 10 18 9.8 9.2e+02 0.6 0.6 1 11 842 852 842 853 0.87 11 18 0.033 3.1 8.4 0.8 2 23 871 893 870 893 0.95 12 18 0.00038 0.036 14.5 0.3 1 23 962 987 962 987 0.97 13 18 0.0045 0.42 11.1 0.6 1 21 994 1014 994 1015 0.96 14 18 6e-05 0.0057 17.0 0.3 1 21 1027 1047 1027 1048 0.95 15 18 0.00046 0.043 14.3 1.6 2 20 1061 1079 1060 1081 0.93 16 18 3.6e-05 0.0034 17.7 0.2 1 20 1111 1130 1111 1132 0.93 17 18 4.8 4.5e+02 1.6 5.1 1 21 1141 1161 1141 1164 0.95 18 18 0.45 43 4.8 0.1 2 20 1174 1192 1173 1194 0.92
Sequence Information
- Coding Sequence
- ATGGACATCGACGTAGATAACACTTTACCGCTAACAAACAACGGACCTAATAACAATAAAGAACAATACAGCTTGCAAGAGGAGATAATAGATTTACACGAATCAGAAGGCTCAGACATTGAAATAGTAGCCGTAAGCAAAAGCGTCGCAGAAGGAAGGACAAAAAATAAACTGAAGCAATTTATACGAAGTCGGCGAAAGACTAAAATTTACGTTAACTCGGTTAATTCGACCGCTGCGAGAAATCAAGACTCGTACATCAAAGAAGAAATTATAATTTCTGACGCGTCTGAATCTGACGGCGATATTCCAAACCAATTAAAAACCTTCAACAGATCAATAGGTCGTTGTAACTTTAGAGGCCTGCAAAACAAACCGAAAAGAAAAGTTCCTAATCCAAACGAATCCTTAAGTTCCATCATTCTCAATTGTCCGCGATGCAACATAACGAAAACAGTATTTTCCACGACTTTAGGAAATATTACTTGCAAAGAATGCAATGTTAATATGACCTATGTCTGCAATAAGTGCAATCTCCGATATCCGACGATGCTTGCATTGTACAGACACAAAAAACTGCAGTGTGAAACGATCGTCAAAACCAATGTCTTGCAACCGAAGAATATGTTCATTCTCAAGTGTTCCAAATGCAATCTATCCCAGAAGATTCAGCGGATAAAATTAAGCAAATGCCTTACTTGCCGCATCAACATGCCTTACGAGTGCATAGTCTGTAGCAAGACCTTCAATACATACTCCAATTTGTATGCCCACATGAAACGTCGTTGTCAGCCGAAGCATCGTACGTATTACTGCAACGAGTGCAGCTTCAATTGCACCTGCGAGTCCATACTCGTCCGGCATCTCAACAAGAATCATCCGGGACTCTTTATCCTCGATAACACGGTGAAATGCTGTGTATGCAACCAGACCTTCGAGGACGACATGCACCTCAAGCGACACGAAATTGGATGCGGCTCGTCGCTTTACCAGTGCAAGTTCTGCGCCTACAGACCTAAGTATCAGGAAAATTTGAAAAAACACCTGCTTACGCGCCATGCTGATAAAGTCTGCGCTAAAGATCTCCAAAAGGTTCTTAGACAATCGGTTTATCGGCCTACAATTGTCCAGAAACCGAAAGAAAAAGTTGCAAAAGGCATTCGCAAAACAGTTTCCGCGGAACCGAACAAAATCGACATAACTTCGAAGACCGTCTACTGTCCGAAATGCAACCTGGATTCGGAGTACATAAAGGGCTTCCGTCATTGTCCCACCTGCAAATCGAACTTCTGCTATCGGTGCAGCGAATGCAACGGCATGTATCGAGGCCTACCATCGCTCTACCGACACATCCACAGACAACACGGAAATCAGCGTTACGAATGCGAAAACTGTGGTAGATTCTTCTCTTTCTTTGGCGATGTCAACGAGCATCGCAAGACCTGTGGCCAAGAGCCCCGTTTCGAGTGCGAAATATGCTTCTTCAAAACAAGATACAAATACAACTTAAGAAACCACATGTTCAAAATACACGACGAGAACCGCCAGAATTTTGTTTGCCAAGACTGCGGCATGCAGTACAAGACACAAAGGACGATGACAAAGCACTTGGACAAATGCGAGAGACGCATCATTAGAATGACGTTGGACCAAAGATCTGACATCTTGTCACCCTGCAATATGAGCAAGAGGATGCCTAATATTCTTAAGAGGCGTGATGAAACAAAAGGTATACCAATTACAGAAGCATCAAATACTACAGCTGATTTAAATATAAATAGTAAAATTGAAGTCATATTATTAAAAGTCATTCCAGACAAAGCATCCAATAGTAACCAAGATTTTTTAAATAAAGATATATGGATAGATTCGTCAAATGATTCAGAGAAATCTCCAATTGTCCATCTAAATTTTGAAAATAATGAAAATCTGTTAGATAAAAAAGATGAAAATACCTCAGAGGATTATTTTCAACCTAACGATCAAATAAATTATGCCCTTGAATCTGATTTATTAGATTTGGCTGATGATGAAAAATTTCCGTGCATTAATAACGAATTGAATAATGATATATCTGTAATGAAAAATTGTATATCAGATGATTCAAATGGCATTTCAAATTCTGATGGTAATGAAAAAGGTTTTGTGGACTCATTGCCTCCTAAAGATGATCCATCTATAATTAATAATGCACCCTTGAATATAAACAGTGTTGGTGATACTTTTTTATCTACAAACGATACTGAATCATTGAATTCACTTGTAAGGCTGAAATGTACAAATTGCTCAACTTTGGTTCAGTGTCTTAAAGTAGAGCCACAAATGGAGTGTCAGAAATGTTGCATGAAATATCAATACCAATGCAAAATATGCACATCAGGTTTCGTTGCATTATATTCGCTTTATACCCACCTTATAAAGTTTCACAGTCGTGGCGAAGCTGTGCATAGTTTGATGATAAAGCCGCAATATGTTAAAGAGCCTAGACAGATTAGAAGACTGCAATGCGATCCTACAGAACTTTATAATTGTCAAAAATGTGGTTCGGGTTTTAAATTAGAAATAATTAAGAATAAGCATGAGACTATTTGCTCTAGAAATCCAAAGCTCAACTGCCCATTTTGCTCTTTCGCAATGAGCTTCAAAAAGAATCTTAAAGAACACATGATCAAGCTTCACTCAGAATCATTTGAAATAAATAAAGTGGATAGTATTATTAATCAGATTGTCAAGAACGGAAATAAACAAAGGAGAGATCAGAAAGCCGCGAGTCTTCTTCAAACGCTGCAAGCTGCCTACTGCCGTAAGTGCGATTGCCGTACACCGGTCCACGAACTGCTAGAGGGAGAAATGAACTGCGCGATCTGCAAAGAGAGCTTTGTCTTCACCTGCACTGACCCGCAGTGTTCACGGACCTTCCCGACCGCGAAGGACCTCAGTTCGCACGCGCGCATGCTGCACATTGAGAGGCGCGACAATTACCGCTGCGCTCACTGCCTCTACGCCACGACGAGCAGCAGGGATTTGATAAGGCATCAGAAGGATTGCGGCAACCTGGTAATCCTGCCGCCACGTCTATTTGTCTGTCCAAACTGCGACAAGGGTTTTAAGAAAGAACGCTATCTGCAAGTTCACCTACAGCGCCCTGAAGGCTGTGCCCGTAATAAACAGCGCGAGCTTGTCTGTCCAAAATGCAATAGGACATTTCGGATGCAGCACTGGCTTGAGAATCATCGCTGCGCGTCCGTAGCGACGCCGTTGGAGCTTCCAGAGCCGACCCTGTCAACAGAGCTGTTTCCCACAGAGCTCGTTCCACTTCAAGAGCCAGAATACCCTTGTCCCGATTGCGGGAAAGTCTTTAAACAGATGCGCTGGTTTAATGCCCACAAGGAGAAGTACTGCGACAAGCAGCGAGTACTTTATCGGTGTGCTCACTGTCGCTACCAGGGCTTCGAAAAGAAGAAGCTCAAGGTGCACATGAGATGCGCTCACATACATCTGTGCACTGGGAAGAAGCTGCGATGCGTGAAGTGTGGCACGAACTGGACTAGCATTTACTCTCTCAATAGACATCTAGACAGCTGCAGCGGTGATTACGAAACCGAGAGGGTAAAGATGAGGAGAAAAAAGAAAAAGTCCTGGGAAGAAATGTTTGAATACGCTTGA
- Protein Sequence
- MDIDVDNTLPLTNNGPNNNKEQYSLQEEIIDLHESEGSDIEIVAVSKSVAEGRTKNKLKQFIRSRRKTKIYVNSVNSTAARNQDSYIKEEIIISDASESDGDIPNQLKTFNRSIGRCNFRGLQNKPKRKVPNPNESLSSIILNCPRCNITKTVFSTTLGNITCKECNVNMTYVCNKCNLRYPTMLALYRHKKLQCETIVKTNVLQPKNMFILKCSKCNLSQKIQRIKLSKCLTCRINMPYECIVCSKTFNTYSNLYAHMKRRCQPKHRTYYCNECSFNCTCESILVRHLNKNHPGLFILDNTVKCCVCNQTFEDDMHLKRHEIGCGSSLYQCKFCAYRPKYQENLKKHLLTRHADKVCAKDLQKVLRQSVYRPTIVQKPKEKVAKGIRKTVSAEPNKIDITSKTVYCPKCNLDSEYIKGFRHCPTCKSNFCYRCSECNGMYRGLPSLYRHIHRQHGNQRYECENCGRFFSFFGDVNEHRKTCGQEPRFECEICFFKTRYKYNLRNHMFKIHDENRQNFVCQDCGMQYKTQRTMTKHLDKCERRIIRMTLDQRSDILSPCNMSKRMPNILKRRDETKGIPITEASNTTADLNINSKIEVILLKVIPDKASNSNQDFLNKDIWIDSSNDSEKSPIVHLNFENNENLLDKKDENTSEDYFQPNDQINYALESDLLDLADDEKFPCINNELNNDISVMKNCISDDSNGISNSDGNEKGFVDSLPPKDDPSIINNAPLNINSVGDTFLSTNDTESLNSLVRLKCTNCSTLVQCLKVEPQMECQKCCMKYQYQCKICTSGFVALYSLYTHLIKFHSRGEAVHSLMIKPQYVKEPRQIRRLQCDPTELYNCQKCGSGFKLEIIKNKHETICSRNPKLNCPFCSFAMSFKKNLKEHMIKLHSESFEINKVDSIINQIVKNGNKQRRDQKAASLLQTLQAAYCRKCDCRTPVHELLEGEMNCAICKESFVFTCTDPQCSRTFPTAKDLSSHARMLHIERRDNYRCAHCLYATTSSRDLIRHQKDCGNLVILPPRLFVCPNCDKGFKKERYLQVHLQRPEGCARNKQRELVCPKCNRTFRMQHWLENHRCASVATPLELPEPTLSTELFPTELVPLQEPEYPCPDCGKVFKQMRWFNAHKEKYCDKQRVLYRCAHCRYQGFEKKKLKVHMRCAHIHLCTGKKLRCVKCGTNWTSIYSLNRHLDSCSGDYETERVKMRRKKKKSWEEMFEYA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -