Ppup002006.1
Basic Information
- Insect
- Pteromalus puparum
- Gene Symbol
- opn4
- Assembly
- GCA_012977825.2
- Location
- Scaffold:327303-333377[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.015 1.4 9.5 0.5 3 21 8 27 6 28 0.86 2 14 1.2 1.1e+02 3.6 0.0 2 20 34 52 33 53 0.93 3 14 0.86 80 4.0 0.2 1 12 235 246 235 255 0.88 4 14 0.038 3.6 8.2 1.1 1 20 379 398 379 400 0.95 5 14 4.5e-05 0.0042 17.4 0.9 1 23 404 427 404 427 0.96 6 14 6.6e-05 0.0062 16.9 1.8 1 23 440 462 440 462 0.98 7 14 0.64 60 4.4 0.1 1 23 481 502 481 502 0.83 8 14 0.00042 0.04 14.4 0.6 2 23 508 529 507 529 0.95 9 14 6.4e-05 0.006 17.0 4.8 1 23 611 633 611 633 0.99 10 14 7.8e-06 0.00073 19.8 5.0 1 23 639 661 639 661 0.98 11 14 0.00017 0.016 15.6 4.6 1 23 667 689 667 689 0.98 12 14 1.9e-06 0.00018 21.7 0.8 1 23 695 717 695 717 0.98 13 14 0.00012 0.012 16.1 0.2 1 23 721 743 721 743 0.99 14 14 7.9e-05 0.0074 16.7 0.1 1 23 751 773 751 773 0.98
Sequence Information
- Coding Sequence
- ATGGGTTCCCTAAGCTTGACCTGTCCCATGTGCTGCGGAGAGACTTTCAACAACTCTGAGTCTCTCAAGTATCATTTACTGAGCATTACAGACAATCTGTACTGTCCTGGATGTTCGATCAGGACTTACTCTATGGCTGCGTTGATACAGCATCTAGACTGTTGTGGAAAGCAAGAGGAGCTAGAGGAGCAGCAGAAAAGCCAGGAGGTTACGACCGATCAAATTGAAAATAATGACAATGATGCGGAAGGATCTAACATTATGATACATGATATGCCTGACCACGATGAAGATACAATCGATGACAGTTTTTTAGCTACAGTAAATGAAGAAGGGATAATGATTGTGGGTGAGGGTAGAACTATACAAGTTGACGAAAATGGTGATATTCAAGTTCTAGAGAAAGGGACTCCAATAAACAGTCAAAAATCTAATAATATAGATAATGGTAATACTATAGAACAAGATAACTATCAAGATTCTGAGCCTTCCCATCTCAGACCTGAAGAGAAAAGTTTAGAGAGGAATGATTGTACTACAAGTATGCCTGACGCTTGTGAATTATTAAATGACAATGACAATGAATTTATGGAAATGGTTGATGGTGACATGCAGTTTGAAAATTCTGAAATGCTTGAGATCAAAAAGGAACATGATCAATCAAATGAGAAAGAGCAAGAAGACGCAGAAAGTGAAGTGATGTACAGTTGTAGTTCGTGTGGTATGAGTTTTGCTTCCGTATTAGAACACATAAAAGAATATCACGATGGACAAGAAGTTGTATTAGAAATGGCAGAACAACAAATTGATGAAATAGCTGCAACAACAGCAGCACAAACTTTTACTGAATCCCCTGCTGATGCAAACACATCAGAAGACACAACAAATAATGCTACAAAAACTAATTTAACATCATCAAAACAGAGACAAGCTATGAATACATTGAAGACAGAGGAGTGTATTGACAGTGATGGTAGAATGTATACTAGAAAAGTTGTGCAAATTGAGAGATTTTGGGACAGGACTCCAGTGACTCTCTCAACAACCAAAGCTCCCATGATTGAAAAGTTTTTCTCTAATGTTGAAGGAGTCAAGGTGAGGGACAAAAGCGTAACGGTCGCTCCAACTCGAATGTACAGATGCAATCAGTGCTTAGAGCAGTTTGCCAAGTTGAGCGATTTTCGGATTCATGTGTGCCTTCAGGGAGCCCATCGTTGTGATCAGTGCGAACAAACGTTCGCCACACCAAAAGCACTGCAGATACATATCAAGCAGACACATCCAGCAGAACCGAGCGAGATTCCATCTCAAAATCTGTTTGTGTGCACAGTTTGCGGAACCGAGTTCGTGACGCACAAGAGTTTGCGACTGCACTCGCGAATGCATGCACCCGTAAGGGCGCGGCATGTTGACGCACCCGTGGGCACTGGAGAGGAAACGTTCGATTGCAATGAGTGTGGTGCCACGTTGTCGGAGTCGTACAGGCTGGCCCACATGGCCTTACATGCTGGTGACCCAATAACTTGTCACGTCTGCAACCGCAAGTTCGATTCACAAGAGAGTTTGAGCATGCATGCCGCAGTGCACTCAGAGATCCCTATGAATTCGAACAGTGGTACGGCAAATAGTGCTGCTACGGCATTGGCAGCTGCAAACGAGATGATCATCTCTGCGTCGGAAGATCCGACCGATCCCATATTTGTCAGCACCGGTATTACTCCTGCTACCACTACACAGGTTAATACCACGGCGTCAACGGTGTCAACGGCGGCGACGACAACAGTAACGACAACAACGACCGATTCAGCCGAGCTGCAAAATCTAAAGCCTTATCAGTGTCAGCATTGTGGGCGTAGGTTTACGAGACCTCACGAGAAAGTCAAGCATGAGAGAATACATACGGGTGAAAAGCCACACTCTTGCGAGGTTTGCGGCAAAAAGTTCAGAGTTTCCTATTGCCTAACTTTACACATGAGAACGCACACGGGCGTTCGTCCCTATGAGTGTCAACACTGCGGCAAGCGATTCAAAGCCTCTTCTGTCTACAACCACCATCTGTTGACCCACGGCGATGAGCGCGCTTACACCTGTCCTTACTGTCCAAAGACGTTTAAAACTCGAGTCCAGCTGGCTGGGCATAAGAACAGTCACACCAAGCCGTTCCGATGCACCGAGTGCTCAAGGCCGTTTGCTTCGCTCTATGCTGCACGGGCTCATATCCAGACCCATAAGCAAGACAACAACCTTAAGTTCAGTTGCAACATATGTGGAGCTTCGTACGGTCGTGCCTTTGCTTTGAAAGACCATATAAAACAGCACGAGAAGGATAACACACTTGTGCCTCCTGAAGCTACCCGAGAGGAAGAAGTACAGGAAGTTGAAAGTTTTTTAATGCCAACAGTGGTAGAGGTGGAAGACGATGAACTTATCGTGCCATCGCCTCCCGCTTGTAGCGATCCCATGGATGTTGAGTTAGTGGAAGAGATCCCTCAGATTATCGACACCTCGCAGTTTCCATTTCCTTCAGAGATCTGGGTCATGCGTCCAGTCTGGGAGGTGGTGGTGAAGGTCGTGACGATGGTACCGGTCGTGATAATCGGCTTCATCGGCAATGGCAGCCTAATCCATGCGATCTTTCGCAGCAAGACCCTGCATACCAGCACCAACCTGTTTATCCTTAACATGGCCATCGCCGATTTTGGAACCAGTTTAGTCTGTCCGGGACTGTTCATCTGCATAGACATATTCCAGAACTACATAATGCACAAGCTTGGCTGCAAGTTGGACGGGTTCCTGCTCCAGGCTACGACCCTCGTTGCGATCTTCAGTCTCAGCGCTGTCAGCTACGACCGCGTCTGTGCTATCGTGTTCAACTGTTCTGGAAAATTGTCGATAAGGAATGCGCGCATCTTGATATTCATCTCGTGGATTGTAGCTTTGGCTGTGGCAGTGCCACTCGCCTTTTTTCGCAATTACTATGAGCGCCAGTGGAAGGACTACATGGAGAGCTTTTGTGCGGAAACCATTACCGCCTATCCATATTGGCACATCATTGTCGGCTTAAGTGTCTGGACGCCCCTTGCCATCATGGCTGTTTGTTATACTACTATTTTCATCAAGCTAGACAGATACGAAACGCAAGCCCTCAAGAGCAAGCACCCGATAGTAATCAAGTATAAGGGTAGAGTGGCGAAGATACTCGCTTTAGTCGTGCTGTCGTTTATCATCTGCCGAGTTCCTTTCACCGCTCTAGTTATAAAAAGGGCTCGGATGAGGTGGAATCTGAAGATCAAGATGGGACAGCCAAGCTCTATGTACGTTCTGTGGTACACAAGTCGCTATCTAGTATTTGTTAATGCAGCGCTAAACCCTCTGCTCTACGGCTGTACGAGCGGCAGTTTACGCCAGGAATTAGCCACTTACCCTCCTCTTTCGTGGTTGATTCGCCGTTTCCGTTTGAATCATCCGCCCAAGCCTTACAATCAGGCACCCGTACCTCACGAGCGACTCAAACCTCGTTCACCTTGCATCAGACTCGAGGGAGTGCATGACAACAATGATGTGAGGAACCAACCGATTCGAAATATATCGTCGAGCGTTAGCCAGTTCAAGCTGGCCTCGACCGCTACATCCAGATCGAAATCCGAGAGCAGGATCTAA
- Protein Sequence
- MGSLSLTCPMCCGETFNNSESLKYHLLSITDNLYCPGCSIRTYSMAALIQHLDCCGKQEELEEQQKSQEVTTDQIENNDNDAEGSNIMIHDMPDHDEDTIDDSFLATVNEEGIMIVGEGRTIQVDENGDIQVLEKGTPINSQKSNNIDNGNTIEQDNYQDSEPSHLRPEEKSLERNDCTTSMPDACELLNDNDNEFMEMVDGDMQFENSEMLEIKKEHDQSNEKEQEDAESEVMYSCSSCGMSFASVLEHIKEYHDGQEVVLEMAEQQIDEIAATTAAQTFTESPADANTSEDTTNNATKTNLTSSKQRQAMNTLKTEECIDSDGRMYTRKVVQIERFWDRTPVTLSTTKAPMIEKFFSNVEGVKVRDKSVTVAPTRMYRCNQCLEQFAKLSDFRIHVCLQGAHRCDQCEQTFATPKALQIHIKQTHPAEPSEIPSQNLFVCTVCGTEFVTHKSLRLHSRMHAPVRARHVDAPVGTGEETFDCNECGATLSESYRLAHMALHAGDPITCHVCNRKFDSQESLSMHAAVHSEIPMNSNSGTANSAATALAAANEMIISASEDPTDPIFVSTGITPATTTQVNTTASTVSTAATTTVTTTTTDSAELQNLKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKQDNNLKFSCNICGASYGRAFALKDHIKQHEKDNTLVPPEATREEEVQEVESFLMPTVVEVEDDELIVPSPPACSDPMDVELVEEIPQIIDTSQFPFPSEIWVMRPVWEVVVKVVTMVPVVIIGFIGNGSLIHAIFRSKTLHTSTNLFILNMAIADFGTSLVCPGLFICIDIFQNYIMHKLGCKLDGFLLQATTLVAIFSLSAVSYDRVCAIVFNCSGKLSIRNARILIFISWIVALAVAVPLAFFRNYYERQWKDYMESFCAETITAYPYWHIIVGLSVWTPLAIMAVCYTTIFIKLDRYETQALKSKHPIVIKYKGRVAKILALVVLSFIICRVPFTALVIKRARMRWNLKIKMGQPSSMYVLWYTSRYLVFVNAALNPLLYGCTSGSLRQELATYPPLSWLIRRFRLNHPPKPYNQAPVPHERLKPRSPCIRLEGVHDNNDVRNQPIRNISSSVSQFKLASTATSRSKSESRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -