Ppup000337.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pteromalus puparum
Gene Symbol
PRDM5
Assembly
GCA_012977825.2
Location
Scaffold:2135204-2140167[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.0034 0.32 11.5 1.1 1 23 160 183 160 183 0.96
2 21 0.012 1.1 9.9 3.0 2 23 195 217 194 217 0.96
3 21 1.6e-05 0.0015 18.8 0.1 1 23 260 283 260 283 0.96
4 21 0.29 27 5.5 2.8 1 19 295 313 295 314 0.96
5 21 2e-05 0.0019 18.5 2.5 1 23 328 350 328 350 0.96
6 21 0.0035 0.33 11.5 0.1 1 23 356 378 356 378 0.96
7 21 7.8e-05 0.0073 16.7 0.2 1 23 384 407 384 407 0.96
8 21 0.017 1.6 9.4 1.1 2 23 630 652 629 652 0.95
9 21 3.9e-07 3.7e-05 23.9 1.0 1 23 658 680 658 680 0.99
10 21 0.012 1.1 9.8 4.1 1 23 689 712 689 712 0.96
11 21 0.00046 0.043 14.3 1.7 1 23 718 740 718 740 0.97
12 21 1.6e-05 0.0015 18.9 3.1 1 23 745 768 745 768 0.96
13 21 0.00066 0.062 13.8 5.8 1 23 940 963 940 963 0.96
14 21 0.00015 0.014 15.8 2.2 1 23 969 991 969 991 0.99
15 21 0.58 54 4.5 1.7 1 23 1000 1023 1000 1023 0.93
16 21 0.0017 0.16 12.5 1.4 1 23 1029 1051 1029 1051 0.96
17 21 3.1e-05 0.0029 17.9 1.4 3 23 1058 1079 1057 1079 0.95
18 21 0.007 0.65 10.5 1.8 1 23 1085 1107 1085 1107 0.99
19 21 0.0016 0.15 12.6 4.3 1 23 1111 1134 1111 1134 0.97
20 21 0.00056 0.053 14.0 0.7 3 23 1142 1162 1141 1162 0.99
21 21 0.00037 0.034 14.6 3.1 1 23 1168 1191 1168 1191 0.95

Sequence Information

Coding Sequence
ATGGAGAATTTAGAGGCGGACATGAAATGCTCTGCGACAGAAAGCCAAGCGGAAGATCCAAACACAGCTGAGGCAAAAACTGTCGTCAAAGTGGAGGTGCTACCGGAAATCATCCGAACTTTGGAACTCCGATCCAGAGAGCCGGACGTACCGATTAACGTATTCCCGAAAGAAGAAAAACCAGATGTCGATTCATCAGCGATGAGCAGTAAGTCAAACGCCGATCAATCGAAACTTTCTCATCCCGACAATCTACCGACTCCCGAAAACACCTACTTCCTGCGTGGACTTCCTAAACCTAATTCCAATTCCGAGGAGGACAATGAAAACCTAGTATCTGATCTTAATTTCCACAAGCGAATCTCTAACGGAAGCTACTCTTGCGAGCTCTGCACTGAAAAAAAGGTCGAAAACATCTGCAAAAACAAGACCCAGATCTTCCGCCACCTTCTTCGTTCTCACACACACTGTCAGACGTACGAGTGTCCCTGCTGTCAGTTGACTTTCGACGATCTCTCGACTTTTGAGAATCACATGCAAGAAGAGCATCGCAACTTCGAGAAAACCAAGGCGAAGTATCTCCAATGCGATAGGTGTGGACACAGGAGTAAGAATAAGAACCTGCTGAGGCTGCACTTGCTGAGAAGACACGCCGCTAAGCACAGATACGTCTGCAAATGCTGTGCCAAGTGCTTCAAGACTTGGAAGATCAAGCATGATCACGAGAAAGCTATGGAACAGAAAAACAAGAGGACGAAGAATATCTACAGGCGAGAGTACGTCTGCGACAAATGCGACAAGGTCCTGTCGCCAAAGTCTGAGCTTGTTAAACATATGGAGAACCTTCACCCGCAGGACTTGAAGAAGAAGGGCAGAGTTATGTACGAATGCACGCACTGTACCAGGTATTTCCTGACACGCAAGTCACTGCTGAAACACTCGCCGTTGTGTCACAAACCTTTGGAAACCGATTTGACGGGCTTCTCTTGTCCCAATTGCGACAAGCGACTTTCGAGCAAGGACCACTTAAAGAAACACTCGCTTGTTCACAGCGGTGAACGACCGCACGTTTGTCCAGAATGCGGTCAAGCTTTTGCTCTGCTTAATACTATGAAAGTCCATGCGTTATCGCATTATAATATCAAACCGTACGCCTGTGGTATCTGCGGTCTTAACTACTCGCAGAGATCGGCCTTGATGACGCACTGGAAGAGCAAGCACAAGAATCTACCGGCACCTGCACCGATTGAGATTCATCAATTCTTTGATCATGAAGGCAAAATTGTCATTCCCTGTGATTATGAACAGAAAGGACATTCTCGCTGGAGTCGCAAACAAAGCATCATCTCCAGGGTGCGCGAACAATCAACTACCAAACTTGACAAGTCAAGATGTCCATCGACCTCAGTCAAAAGTCATTCTCCCCACAAACTGTCGTCTAAATGTACGGATAAGTCGACCTCTAAGAGAAAAAGTTCGGTACCGGTGAAGATCTCCAAGAAGAAGATCTATGATTCCGATTCTGATTCTGAGTACGAAAAGATGTGTGCAAGGAAGGGCGCCAATCTAAAAGTCAAAAAATCTTATCCGAGCTCGGATTCTGATTTTACCTCCGACTCCGATTCTGACTATAAATTAAAAAGGACCAAAAAAGTTCCCAATCGTCCAAAGACTCTTGAAACGAATGCGCCTGCCAAGAAGATTGTTTCTCAGTCTAAAAAGGCCAAGAAGAATGCTCCCAAAAAGCTTGATACTAAAAAAGTGAAGCAAAAAGCTTCTTCCGAGAAGTCTAACTCTAAAAAATTAAAGAAAGACGCTTCTCCCAAAAAGCCCAAGTCAGAAGATCCGGATATTATAAATTTAATTTTGAAAATAAATAACGACTTAGTTTGCAAACTCTGCGATTTGACGTTCGACAAACTTTTCAAGATAAGGTCACACATTCGAAATAAGCATCAACCCCGAGAGCTCTATAAATGTACAGATTGTCCAAAGGTCTACAAGTCCAAGTACCTACTAAAAATGCACATAAACATCCACCGTGAAGACAAAAGCGACTATATGCATTACTGTGATAAGTGCAATTATAGCACAGTGAACAAGTACTATTTCAAGGAACATGGAAGAATTAAACATTCTGATCTTAGTCCATTTGAATGCGATTACTGCAAAAAGCGATTCAAAGGTAAGGCACAACTCAAGTTTCATATCGGAACGCACAACCCACACGAGCACATGTGCGACATTTGTGGAAAGATGTACTCCAGTGAGGAGTCACTGCACAAGCATAGACGGATGCTCCACATCATTGAGCGAAACTTTAAGAAAGGGTATTCCCGCTGGAGCCGCAAACAGAGCATCATCTCTAGGGTACGCGAAGAATCAACTACCAAACTTGACAAGCCAAACTCTGCATCGACCCCAGCCAAAAATTTACCTTCTAAAAAACAGCTACACAAAACTACGCCTGAACTCCCGAACAAGCCAAAATCTAAAAGAAAAAGCTCGGTACCGTTGAAGGTCACCAAGAAGAAGAGAATTGTTTCTGATTCCGATTCGGATTCTGAGTACGATGAGATGTGTGCAAAGAAGGCTGCCAAACTGAAGCCCAAAAAAGCTCATCTAAAAACTAAGACATCTGATAAAACTACGAAAACGAAGACCGTGACTAAGTCCAAAAAATCGAAAGAAGAAGCTATCCCTAAGAAGCCCGCGTCCAAAAAAACAATAAAAGAAACTCCTGACAAAGAGGCCAATGGAACAGAGCCGGAGAATACTGATATTGAAAAACTCTATTTTAAATCCACAAGCGACGATTTTATTTGTAAGGTATGCAACGAGAAGTTCAAACATCGTTTCAAGATGAGAAGGCATATTCGAAATAAACACCAACCACGTGAGATTTTCAAATGTCTCTACTGCCCGCAGACATACATGTCTAAGTACCCGCTGAAAACGCACATGAACAAGCATCAGGAGACGGACAGTAACTATGTGTATCTCTGCTCCCAGTGCGATTTTCGTGCCATGTCCAAGCATTCTCTTAACATCCACGAGATCAGAAAACATAGCAACGAGTATCAATTTGAATGCGACATCTGTAAGAAGCGATTCAAGGTAAAGATGGATCTCAAATTCCATCTTGGAACGCACAACGACGCCCAAAATATGTGCGACATTTGCGGGAAAATGTATACCAGTGAAGAATCGCTGAAAAAGCATAGGCACATGATCCATATCATCCAGCGAAATTTTAAGTGCCCAAAATGCTGGGTGAAGTTACAGACTCAGGAGAGCTTGGACCATCATCTTAAATCACATGATATCATGTATACCTGCGACATCTGTAACGTTCAGTTTACCAAGAAACATTACGTCACCAGACACAAAAAGCGAGTCCATTTAGTGGAGAAAAACATACTCTGTCCAGTCTGTGGTAAGCGTTTTGCTTGCAACGCGTCGCTGAGAGTTCACTACTTGACGCACTCCAAGGTTAGACCATACTTGTGCAACGTCTGTGGCTGCAGTTTCACTCAGCGATCCTCGATGATGTTACACTGGAAGAAAAAGCACCCGGACGCTGAGGCACCACCACCACCGGTCCCACTCACCAACATCTTCGAAGCCATGGACAACGAGGTGCGGAGGCTTGTCGAGCCGATAATTGGATCTTCGATTGGCGGCTAA
Protein Sequence
MENLEADMKCSATESQAEDPNTAEAKTVVKVEVLPEIIRTLELRSREPDVPINVFPKEEKPDVDSSAMSSKSNADQSKLSHPDNLPTPENTYFLRGLPKPNSNSEEDNENLVSDLNFHKRISNGSYSCELCTEKKVENICKNKTQIFRHLLRSHTHCQTYECPCCQLTFDDLSTFENHMQEEHRNFEKTKAKYLQCDRCGHRSKNKNLLRLHLLRRHAAKHRYVCKCCAKCFKTWKIKHDHEKAMEQKNKRTKNIYRREYVCDKCDKVLSPKSELVKHMENLHPQDLKKKGRVMYECTHCTRYFLTRKSLLKHSPLCHKPLETDLTGFSCPNCDKRLSSKDHLKKHSLVHSGERPHVCPECGQAFALLNTMKVHALSHYNIKPYACGICGLNYSQRSALMTHWKSKHKNLPAPAPIEIHQFFDHEGKIVIPCDYEQKGHSRWSRKQSIISRVREQSTTKLDKSRCPSTSVKSHSPHKLSSKCTDKSTSKRKSSVPVKISKKKIYDSDSDSEYEKMCARKGANLKVKKSYPSSDSDFTSDSDSDYKLKRTKKVPNRPKTLETNAPAKKIVSQSKKAKKNAPKKLDTKKVKQKASSEKSNSKKLKKDASPKKPKSEDPDIINLILKINNDLVCKLCDLTFDKLFKIRSHIRNKHQPRELYKCTDCPKVYKSKYLLKMHINIHREDKSDYMHYCDKCNYSTVNKYYFKEHGRIKHSDLSPFECDYCKKRFKGKAQLKFHIGTHNPHEHMCDICGKMYSSEESLHKHRRMLHIIERNFKKGYSRWSRKQSIISRVREESTTKLDKPNSASTPAKNLPSKKQLHKTTPELPNKPKSKRKSSVPLKVTKKKRIVSDSDSDSEYDEMCAKKAAKLKPKKAHLKTKTSDKTTKTKTVTKSKKSKEEAIPKKPASKKTIKETPDKEANGTEPENTDIEKLYFKSTSDDFICKVCNEKFKHRFKMRRHIRNKHQPREIFKCLYCPQTYMSKYPLKTHMNKHQETDSNYVYLCSQCDFRAMSKHSLNIHEIRKHSNEYQFECDICKKRFKVKMDLKFHLGTHNDAQNMCDICGKMYTSEESLKKHRHMIHIIQRNFKCPKCWVKLQTQESLDHHLKSHDIMYTCDICNVQFTKKHYVTRHKKRVHLVEKNILCPVCGKRFACNASLRVHYLTHSKVRPYLCNVCGCSFTQRSSMMLHWKKKHPDAEAPPPPVPLTNIFEAMDNEVRRLVEPIIGSSIGG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-