Basic Information

Insect: Pteromalus puparum
Gene Symbol: Rcc1l
Assembly: GCA_012977825.2
Location: Scaffold:252760-261144[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0013 0.12 12.9 0.9 1 23 351 373 351 373 0.97

2 18 0.079 7.4 7.2 1.5 2 23 418 439 418 439 0.95

3 18 0.031 2.9 8.5 0.2 2 23 505 526 505 526 0.97

4 18 0.034 3.2 8.4 3.5 2 23 566 588 566 588 0.96

5 18 1.6e-05 0.0015 18.9 3.9 1 23 593 615 593 615 0.94

6 18 0.00059 0.056 13.9 0.6 1 21 622 642 622 646 0.92

7 18 0.04 3.8 8.1 2.0 3 23 722 742 720 742 0.93

8 18 0.0001 0.0098 16.3 6.0 1 23 788 810 788 810 0.97

9 18 0.00032 0.03 14.8 0.7 1 20 815 834 815 836 0.94

10 18 0.055 5.2 7.7 0.3 2 23 847 868 847 868 0.97

11 18 1.5e-05 0.0014 19.0 0.7 2 23 904 925 903 925 0.97

12 18 3e-05 0.0028 18.0 1.6 1 23 930 952 930 952 0.95

13 18 2.8e-05 0.0026 18.1 1.6 1 23 958 980 958 980 0.98

14 18 1.1e-05 0.001 19.4 1.5 1 23 999 1021 999 1021 0.95

15 18 4.3e-07 4e-05 23.8 0.6 1 23 1027 1049 1027 1049 0.99

16 18 4.6e-05 0.0043 17.4 0.2 1 23 1055 1077 1055 1077 0.97

17 18 0.0028 0.26 11.8 7.3 1 23 1083 1105 1083 1105 0.96

18 18 0.012 1.1 9.8 0.4 1 20 1111 1130 1111 1132 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0013	0.12	12.9	0.9	1	23	351	373	351	373	0.97
2	18	0.079	7.4	7.2	1.5	2	23	418	439	418	439	0.95
3	18	0.031	2.9	8.5	0.2	2	23	505	526	505	526	0.97
4	18	0.034	3.2	8.4	3.5	2	23	566	588	566	588	0.96
5	18	1.6e-05	0.0015	18.9	3.9	1	23	593	615	593	615	0.94
6	18	0.00059	0.056	13.9	0.6	1	21	622	642	622	646	0.92
7	18	0.04	3.8	8.1	2.0	3	23	722	742	720	742	0.93
8	18	0.0001	0.0098	16.3	6.0	1	23	788	810	788	810	0.97
9	18	0.00032	0.03	14.8	0.7	1	20	815	834	815	836	0.94
10	18	0.055	5.2	7.7	0.3	2	23	847	868	847	868	0.97
11	18	1.5e-05	0.0014	19.0	0.7	2	23	904	925	903	925	0.97
12	18	3e-05	0.0028	18.0	1.6	1	23	930	952	930	952	0.95
13	18	2.8e-05	0.0026	18.1	1.6	1	23	958	980	958	980	0.98
14	18	1.1e-05	0.001	19.4	1.5	1	23	999	1021	999	1021	0.95
15	18	4.3e-07	4e-05	23.8	0.6	1	23	1027	1049	1027	1049	0.99
16	18	4.6e-05	0.0043	17.4	0.2	1	23	1055	1077	1055	1077	0.97
17	18	0.0028	0.26	11.8	7.3	1	23	1083	1105	1083	1105	0.96
18	18	0.012	1.1	9.8	0.4	1	20	1111	1130	1111	1132	0.89

Sequence Information

Coding Sequence: ATGGACGCCGTCGAGGTAAATACGTCGGAGGTGCAGCAGCCGCACGACGTAGACATGCCGGTCCAGCTCGAGATCTGCCGCGTCTGCCTCCTCGGCAACCACTTGATGCGTGAACTTTTTCACCAGGACGTAGTACCGAATCTCTCTGAGAAGGCCATGAGCTTCGCCAACGTTAAGATTATGCCTGGAGATGGACTGCCCCCACACATTTGCTACGATTGTACAGACAAGCTTGAGTCGGCCTACAGATTCAAGATGCAGGTTGAGCAGGCTGACAGCATGTTGCGAGAGAGATTGGATTCACTGAATATGAAAGAGGAACTCTTTTTTGGTGATGTAGACGTGAACATGTCATCTCACAGAAATGATGTGGAAGAAATAACGGAAGAAAGTTTGCTTCTCAAGGATCACATGGATTTGCTAAATGTTCAAAAAATAACCGAACACGAGGATGTCTCTCAGAGTCAAGATATAAAAGGGGAAGACATAGAAGAGCACAAGGAGCACCAACAGTTCTCTGAAGATGAGCAACAACATATGCAGCTTCAAAGCAATGAAGAAATACAAAAGATCCACAGTGAACAGCAGATTGAGAGTCAAGTCAGTGAAGCTATACAGCATGTGTCGGAGGAGCATCACAATCAATCATTTGAAACACATGAATTTCAAGAGATGATGTTCAAAGAAATCAGACATCAGGAAGAAATGCAAGAAGCATTGAACCATGCACAGCAACTGGCAATGCATGAACATAATTATGTAGCAGAAGCACAGTCATGTGAAGTTCCTGACAAGGATGAATCAACCATGGAGGAATTTGATTTAGACCACAAAGAACATGCAGAAAACAATGTAATGAATGAACGTATCCAAATTCATGATGTGCCAGAAGAGTCTTCTCCAGTAGAAGGAATTCGAAGAAGTAAACGTAAGATAAACCAAAGGAAATTACAAGTTGACAGAGATTCAGATGAGGACAACTACTTCGAAAATCTAAATCTAAGTTCTAGATTGAAAAAGGTTCAGTCTGAAAAGTTGGACAAGGTTTACTTTGTGTGTTATCTATGTGACAGACAATTTATGTCAAAGGATGTTTTGAAGGAGCATATGTATTCTCATGAGGAGGTAAAAAAAACTCTGTCTATGTCGAAAAAGCAGATAGAAAAACCGCTAAAGACGCCAGAAAAGCAAAAAACTGAAACCGCAAGTCCGACTTCGTCAAAACCACCGTCCAGTGGTAAACAACCAAATACCTGTCCTCATTGCGGAAAGGAATATCTTTATGTCATTTCGTTTAATAAACATTTGAAGCAGCACGAAAAAGAAAAAATTAAAGAGATGAAGAAAGAGCCTATGCCGTTAGAAGTTTCCTTTAAAGAAGACGACGAATCTTTAGATTTTGATGGCTATGCAGACAATGGTGCAGTTGCTTCAGAAAGTGAAGGAGAAACTGCTGTTAAACAGGAAGAAGAAGTTTCAATAAAAACAGAATCAATGAAGAACGGTTTGGCCAAATGTAACGTTTGTGAGGAAGAGTTCGACACAATTAATGGACTTGAATCTCACCGTTTGCAACACGTCGTTGAAGGAATTCTCACCGAACAGGATGATACTGAAAAATTAAAAGTATCAGATGCGAACAACGATTTACATGTAAACAAAGAGCAAAATGATTCCAAAGTTGAAGAATGCAGGAGCTGCCCGCACTGCCGAGCTATTTTTAGTCATGGAAAAGCTCTGGTTCGTCACATAGACACCTGCCATAGTGCCAATAAGTACGTCTGTAAGCTCTGTCATCAGAGCTTTACACGTAGGGATCATCTACGTCGTCATGCCGAAGCACATGGCAACAGATTGAAGAGTTACAGGTGCACCCAGTGTAACAAGAGTTTTGGTAATGAATTGACGTTGAGAAATCATCTAATAGCCACGAACCACAAGACGATAATGCATGGACAGGAATATGATCCGAACAAGAGAATTAAAAGGGTGGCTGCTAAAGCTGCGCAGAAAATTATCGACCAGATAAAGACTGATTTGAATTCGGATGAATTCGAAGAGAAGGATGAAAACGGTGAGGTTCTTAAGGAGGAATTGATAGAGGAAGAGATGGAAAGCACATTATCAGCAAAGAAACAGCAGCGAAATGCCAAAGCTCTATTTTGTGCTGCATGCAATCAAAAGTGCACCTCAAAACAAGCTCTCATGAAACATATGGAGCAGCACGTTAAAAACGACAGTGCAGTAAAGCACGAAAAAGTGAATAAGCCTGAGGAATCTCGTGAACACGATGTTAACGATGATGAAAACGAGGAGGATGACGACGACTTTGAAGGTGGTCTCGACTGGCCGATGGACACTCACGAATGCCCCACCTGTAAAAAATGCTACAGTACCAAGAAATCTCTTCTCCGGCATCAGCTGCTGCACGAAGAACCAAACTTTGAGTGTGACATCTGCAATGTCAAGTTCTACAGAAAGGATAAGCTTAAAGCCCATTACGACAAGTGCTCGGAAAAGAATCCGGATCAGGTGAGAAAGTGTAACATTTGCGGGGATACTTTTGAAAATAATGAGATTTTGAAAGAACACAGAGCTAAACACGTAATGGAAGGAATATTGACGGAAGAGGATTTGCGGGAAATCGAACCGAGACCAGAAGACGCAGAGAAGACAACGCGGAAAAGAAGAACGGACATTGTTGGACTAGAGTGCACTGAATGTAACAAACGATACACCTCCAGAAAAGGATTGCTCAGGCACATACAGGTACACGAAGGTAAAAAGTACCTGTGCGACATTTGTCCCAAGAAATTTTATAGGCGAGAGCATTTGAAGATTCACGTCGCGAAACACAACATGGTCAAACCGTACAAATGTCCACGGTGCACCAAACGCTTCATCAAGGAAGAACAGCTGAACAACCATATAACTAAGCACGACAAAACGTTGAATAAAAAGGTGAAAACCGATTCGGCCGATACCTCCAAGAGATTCTTGTGCGAAATCTGTTCGAAGTGTTTTACGCAATCCACTACTTTAATAGCGCACTTGCGTGCCCATAATGGTATCAAACCTTACGTTTGTGAGGTCTGCTCTCGGCCATTTACGACGAACGCGTATCTCAAGATGCACATGAGAACGCACACGCAAGAGAGACCCTACATCTGCCAATACTGCTCGAGGGCGTTCGCGCGAGCTGACACTTTGGCTAACCATTTGACGTCGCATACAGGCGAGGCCAAGTATCACTGTAAGTATTGTTCGAAGCACTTCAGACGGTTGAAATCGTTGAAGGAGCATGTATTCATTCATACTGGCCAGCGTCCGTATGCCTGTCCCACGTGCGACAGGCGGTTTAACAATAACGGCAGCAGGTACGCACACAGTAAGCGCTGCAAGCAAAACGTCATGCAGGCGGGCAACGCGGAAATTACTGTGCATAACATCAATGTCGAACCGCAAGAAATGCAAGAGATGCAGACTATTCAGGAGCTGCAGGAACATCAAGTCGAGCAAGATGAGCAAGAACAGCAGTTGCAGTTGCAACAAGAACAACATGAGCAGTTGCAGCAGAGTCAATTACAGCCCCAGAGGATACATCAGGCCACTATTAGTCAGGCTCAGATTATCAAGGGCCAAAATATCAAGACTATCACCATAACAAGACCAGATGGTGGATTAACTCAGCAGCATGTGTTGGGACAGGAGATTCTTATGCCGCTGATATTGCCGCTTACGGTAACGCTCACCGATGTAGGCGAAGAGGTGATTCTACCAGAGGGTACTAAAATTTTTACAACTAGTGCAATCAGAAATTTAGCGACGTTTGTCGGCAGACGGAGCGGGAAGGGTAACTCTAGGGGTCCGAGAAAATCAAAGCCTAAATTAAGCAAAAAGCAAAAACTCAAAACTATGCCAATATTTGATTATAAAATAAGCAAACCATCTGATCACAGAGTTTACGTTTGGGGTTTGCAAGATCACGGAGCTCTAGGTACAGATAAAAAGCTTTCTCATCGTAAAGGAGGTGCTGCTTATTCCGGATATCCGCATAGATTAACTTTTGGAGAATTCTATCGTGTAACTGATGTTACGTGTGGTTATGGATTTACAGTTTTTGGTGTAAAAGCTAAAGATCATAGGATTTTATATGGAACTGGTATTAATTCAGATTCACAACTTGGGTACCATCCAAAGGATGAAAAGTTAAAGATTCCTGTTGTTCGTGAACCAAGACCTATTTTTATTCCTTTGAAAGGAAAAACTGCCAATATTTTGGGATTATCAGCTGGGAGAGCGCATTTACTTGTATTAACAGATGAAGGTCTATACACATTAGGAAACAATGGATATGGACAATGTGGCAGGCCAATTATAAACAATGAAGACTATTTGAAAAGTAAAGTTGTGCATCATATACCAGATATCAAAGGCACAAAAATTAAAAGTGTGACTGCTGGTCAGGATCACAGTATGCTTTTAACTGAAAATGGAGAGGTGTATTCATTTGGTTGGGGAGCTGATGGTCAAACTGGTTTGGCCCATTATCATAATGAATATAAACCGTCATTAGTTAAAGGAGATCTGTCTGGTGAAAATATCATTAAAGTAGCATGTACTGCTGACTGTGTTCTTGCACTTTCAGATAAAGGCAAAGTATTTGGATGGGGAAATGCAGAGTACTCACAACTACCAGCTCATAGTGATAGTCAACAAATTAACATTGCAACGCAATTAAAGAGCTGTGATAATTTAGGAAATATCATTGATATAGCTTCTGGTGGAAGCTTTTGTATGGTATTGAATAGTGAAGGAGAGGTTTATGTTTGGGGATTTGGAATACTTGGATTGGGTCCAGAAGTACAAAAAATTTTGAAGCCAACTCTTGTTCCAAAAACTCTCTTTGGTATAAATCCATACGAACCAGACACAAAGGTAGTCAAAATATTTTGTGGAATAAGTCAATTAGGGGCCATAACTAATGTGGGTCATCTTTACATGTGGGGCCGCAATCAATATGGCGCCTTAGGACTTGGGAATTATAAGGATCAGTTCTTTCCATTAAGGGTTTCCATTGGAGGGATAGTCAAGAAAATATCCTGTGGAGTTGACCACACAGTATCGATTTGTAAACCTTTTATTTAA
Protein Sequence: MDAVEVNTSEVQQPHDVDMPVQLEICRVCLLGNHLMRELFHQDVVPNLSEKAMSFANVKIMPGDGLPPHICYDCTDKLESAYRFKMQVEQADSMLRERLDSLNMKEELFFGDVDVNMSSHRNDVEEITEESLLLKDHMDLLNVQKITEHEDVSQSQDIKGEDIEEHKEHQQFSEDEQQHMQLQSNEEIQKIHSEQQIESQVSEAIQHVSEEHHNQSFETHEFQEMMFKEIRHQEEMQEALNHAQQLAMHEHNYVAEAQSCEVPDKDESTMEEFDLDHKEHAENNVMNERIQIHDVPEESSPVEGIRRSKRKINQRKLQVDRDSDEDNYFENLNLSSRLKKVQSEKLDKVYFVCYLCDRQFMSKDVLKEHMYSHEEVKKTLSMSKKQIEKPLKTPEKQKTETASPTSSKPPSSGKQPNTCPHCGKEYLYVISFNKHLKQHEKEKIKEMKKEPMPLEVSFKEDDESLDFDGYADNGAVASESEGETAVKQEEEVSIKTESMKNGLAKCNVCEEEFDTINGLESHRLQHVVEGILTEQDDTEKLKVSDANNDLHVNKEQNDSKVEECRSCPHCRAIFSHGKALVRHIDTCHSANKYVCKLCHQSFTRRDHLRRHAEAHGNRLKSYRCTQCNKSFGNELTLRNHLIATNHKTIMHGQEYDPNKRIKRVAAKAAQKIIDQIKTDLNSDEFEEKDENGEVLKEELIEEEMESTLSAKKQQRNAKALFCAACNQKCTSKQALMKHMEQHVKNDSAVKHEKVNKPEESREHDVNDDENEEDDDDFEGGLDWPMDTHECPTCKKCYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILKEHRAKHVMEGILTEEDLREIEPRPEDAEKTTRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCPRCTKRFIKEEQLNNHITKHDKTLNKKVKTDSADTSKRFLCEICSKCFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCSKHFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNVMQAGNAEITVHNINVEPQEMQEMQTIQELQEHQVEQDEQEQQLQLQQEQHEQLQQSQLQPQRIHQATISQAQIIKGQNIKTITITRPDGGLTQQHVLGQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTSAIRNLATFVGRRSGKGNSRGPRKSKPKLSKKQKLKTMPIFDYKISKPSDHRVYVWGLQDHGALGTDKKLSHRKGGAAYSGYPHRLTFGEFYRVTDVTCGYGFTVFGVKAKDHRILYGTGINSDSQLGYHPKDEKLKIPVVREPRPIFIPLKGKTANILGLSAGRAHLLVLTDEGLYTLGNNGYGQCGRPIINNEDYLKSKVVHHIPDIKGTKIKSVTAGQDHSMLLTENGEVYSFGWGADGQTGLAHYHNEYKPSLVKGDLSGENIIKVACTADCVLALSDKGKVFGWGNAEYSQLPAHSDSQQINIATQLKSCDNLGNIIDIASGGSFCMVLNSEGEVYVWGFGILGLGPEVQKILKPTLVPKTLFGINPYEPDTKVVKIFCGISQLGAITNVGHLYMWGRNQYGALGLGNYKDQFFPLRVSIGGIVKKISCGVDHTVSICKPFI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -