Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.71 8.3e+02 0.1 2.2 12 39 47 73 39 78 0.75

2 7 3.4e-08 4e-05 23.5 9.4 5 44 71 110 67 110 0.83

3 7 2.6 3.1e+03 -1.7 0.1 19 27 116 124 112 137 0.79

4 7 0.22 2.6e+02 1.7 0.3 14 28 143 157 127 171 0.82

5 7 0.022 26 4.9 1.3 11 39 206 231 197 240 0.82

6 7 0.77 9e+02 -0.0 0.2 33 43 256 266 234 267 0.77

7 7 0.096 1.1e+02 2.9 2.4 3 29 258 283 256 294 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.71	8.3e+02	0.1	2.2	12	39	47	73	39	78	0.75
2	7	3.4e-08	4e-05	23.5	9.4	5	44	71	110	67	110	0.83
3	7	2.6	3.1e+03	-1.7	0.1	19	27	116	124	112	137	0.79
4	7	0.22	2.6e+02	1.7	0.3	14	28	143	157	127	171	0.82
5	7	0.022	26	4.9	1.3	11	39	206	231	197	240	0.82
6	7	0.77	9e+02	-0.0	0.2	33	43	256	266	234	267	0.77
7	7	0.096	1.1e+02	2.9	2.4	3	29	258	283	256	294	0.77

Coding Sequence: ATGGAGACTGAGTCGAAAAATGCCAGTTCTGATCAGACTGATCAGAAAGTATCCAAGAAATTGTATAAATGTGGCTTTGAGGGCTGCAAACTCGAATTTTTAAAGCCAAGTAGTTTAAAGTTTCACATAAATGTTCATTTGAAAGAGAAACCTTTCAAATGCACACACAATGACTGTGATAAAGCTTACAGTAATCCTTCGCATTTAAAACGCCATGTGCTACTAACCCATGAGAATGCACTCAAACTAAAAAAGATTAGATGTAAACACTGTCAAGAGTATTTTAGTAATACCAGTAATTTGAAGCGCCACATTCAGCGAACTCATTCGGACACTGCAAAGTTTTGTCAACTGTGTTCCAAAAGATTTTATTCACAAAGTTTACTAAATGATCACATGATATTACACAAAGAGAAGGGAAAGGAATTAAATTCGTTTGATTGTGAAGAGTGTGGAAAAGAATTGAAAAGTTGGTATACACTAATTATACACAAGAGGAGACATTCAAAGAATAAATTGCAATGTCCTTTTGAACATTGTCTGGTAGAATTTGATACAAGAAAAGCCTTACGGGACCATAAAGTGTGCTTTCATGCCAAAGAGCATGCTAATCATAAGGAAATCCACAAAAACTATACCTGTGCAGATTGTGGCAAAGTATTTTATACTAAAAGTAACTTAAGGGTACATGTACCAACTCATTTAGTACAAGAAAAAGAATTTCCTTGTATGTATAAAAATTGTGACAGAATCTATCTGTTTAAAAGAAATTTAAAGAAACACATACAAATTTCTCATTTGGGTAAAAGATTTAAATGTGAAGTTTGCCATTCTGAGTTTACATCCAAGCAGAGACTTGATCAGCATAAGCTAAATGTTCACCAAGGACCAAAAAAATCACGTAAAGGACGCTCAAAGATTGAAATCAAACTCGAATAA
Protein Sequence: METESKNASSDQTDQKVSKKLYKCGFEGCKLEFLKPSSLKFHINVHLKEKPFKCTHNDCDKAYSNPSHLKRHVLLTHENALKLKKIRCKHCQEYFSNTSNLKRHIQRTHSDTAKFCQLCSKRFYSQSLLNDHMILHKEKGKELNSFDCEECGKELKSWYTLIIHKRRHSKNKLQCPFEHCLVEFDTRKALRDHKVCFHAKEHANHKEIHKNYTCADCGKVFYTKSNLRVHVPTHLVQEKEFPCMYKNCDRIYLFKRNLKKHIQISHLGKRFKCEVCHSEFTSKQRLDQHKLNVHQGPKKSRKGRSKIEIKLE

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01274761; iTF_00287543; iTF_00287467; iTF_01487258; iTF_01036496; iTF_00286684; iTF_00286630;
90% Identity: iTF_01274761;
80% Identity: iTF_01274761;