Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 3.9 4.1e+03 -2.4 0.0 31 37 11 18 10 24 0.78

2 3 1.9e-08 2e-05 24.2 0.0 1 38 32 68 32 71 0.91

3 3 0.11 1.2e+02 2.5 0.0 6 29 89 111 86 112 0.86

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	3.9	4.1e+03	-2.4	31	37	11	18	10	24	0.78
2	3	1.9e-08	2e-05	24.2	1	38	32	68	32	71	0.91
3	3	0.11	1.2e+02	2.5	6	29	89	111	86	112	0.86

Coding Sequence: ATGACATCAAAGAGGGGCGTCATTGTTGGATCCACACTCTACTTGAAAGCAAAAGTTCTGGGTCTAACTCTCAATCCATCTCGAAGTGAATACACAAACAAAGATATGCAAGGGGCCATACAAGCAGTCATGGATAGATCTAGCTTACAACGGGTATCTGACTGTTACGGTATTCCAAAAGCAGTTTTGTGGCGAAGAATTCAGAAAGAAGGCTGTGTACCACCTAAACACGAACAAAAGAAAAGTTATGTAGCTGACAGAAGAGAAGCTGCTGTAAAAGCTGTGGAAAGAGGAGATTCTGCCACAAAAGTTGCCAATGAATACAAAGTGAGCTTAATGATTCCACATTTATATCCTTAA
Protein Sequence: MTSKRGVIVGSTLYLKAKVLGLTLNPSRSEYTNKDMQGAIQAVMDRSSLQRVSDCYGIPKAVLWRRIQKEGCVPPKHEQKKSYVADRREAAVKAVERGDSATKVANEYKVSLMIPHLYP

Sequence clustering based on sequence similarity using MMseqs2