Plou000091.1
Basic Information
- Insect
- Psyttalia lounsburyi
- Gene Symbol
- -
- Assembly
- GCA_030522865.1
- Location
- JAPYZN010000004.1:57865-63222[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.8e-05 0.0046 18.3 1.0 1 21 59 80 59 81 0.95 2 14 1.1e-05 0.0018 19.6 1.6 1 23 89 112 89 112 0.98 3 14 0.014 2.3 9.8 0.4 1 21 167 189 167 190 0.94 4 14 7.7e-05 0.013 16.9 5.2 1 23 198 221 198 221 0.98 5 14 0.013 2.2 9.9 2.0 1 21 251 271 251 272 0.93 6 14 0.0019 0.31 12.5 2.4 1 23 280 303 280 303 0.97 7 14 0.001 0.17 13.4 0.7 1 21 327 347 327 348 0.95 8 14 0.00061 0.1 14.1 2.3 1 23 356 379 356 379 0.97 9 14 0.12 20 6.9 1.0 1 21 418 438 418 439 0.95 10 14 0.25 42 5.9 4.6 1 20 447 466 447 467 0.94 11 14 2.7e-05 0.0045 18.3 1.9 1 21 506 526 506 527 0.96 12 14 0.86 1.4e+02 4.2 0.8 3 23 537 558 535 558 0.93 13 14 0.00021 0.035 15.6 3.3 1 21 606 626 606 627 0.95 14 14 0.0082 1.4 10.5 3.2 1 23 635 658 635 658 0.98
Sequence Information
- Coding Sequence
- ATGCGGGCAACTCCCGAGATTTGGCTGCCCCTACTGCCACTATCTCTCCAAAAGAGCATCGAATGTTCACaGTTGTATAATAACCATCTACCGTCCCTACAAGATCAAACTGGCGAGTATCTCCTAAGACATTCCAAGAATGGACCCTGCGAGCTTGTATCGCCAGTCAAGAAATTCGTCTGTCCAAGTATGTGCGGCAGTTCGTTCAGTCACAGCTACAGTTTAACGAGACACTTGAAGTACGAGTGCGGACAACAGCCGAGATTCAAGTGTCCTTACTGTGACTTACTCTACAAGAGAACTTCAAATGTCACACAACACATCAGAACGCGTCACGTTAACTGCGAGACTTATGCCATCGACGTTATCGATAATAAAATCGTCGATGATTATAATTGGTTGAATGACGATCTACTGGCCCGACCGCAACCAGATTTTCCACAACCACCGAGAAGTAGACCACGAAATCTCACCGCCCGTTCACGTAGCAACTACATCTTCACGTGCCCCAATGAGGGCTGCCACCGTAGTTTCTATTGGAAGGGAAGCTTGACGTGGCATGTGAAAAATGCATGCGGCCAACAGCCGAGATTCAAGTGTCCCTACTGCGATTATTGCTGTAAAGTTAAGAGTGACATTAGAAAGCACATTAACCGGGTACACAAGGGCTCTGAAGTATACGTAATCGAGCTAGTTGATACAAATCtcAAGAGGAGATACAGAAAGAGAAATAGACTGTACGAGTCGAGATTCTTCTGCGACAGGTGTCTCAGTTCATTTCCATCGAGGCACAATCTCACTAGGCACGTTAAGTACGGTTGCTCGAAGGAACTGAGATACAAGTGTTCTTACTGCGATATGAAATCACAGGACAAGTACAATGTTTACAGACACGTGAGAAATCAACACACTGGAATGGTGGTCAGTCTTACCGATATGTACACTGTTATTCCTGGTGATACTGTTTACGAGGAGGTTTTCTATTGCGCCAATTGTCCAAGCTCATTCTCCACTAGAACAAGCCTATCGAGACACGTGAAATACGGTTGTAATCAAAATTTGAGGTACAAGTGTTCGTATTGCGATATGAGATCCAAGAGCAAGTACACGGTTTGGAGGCATGTACAGAGACAACATGTTGGAGCTATTGTCTCTTTGGATGACACCTATTGCTTGGTAGACAGCACCCAGGGATGGCCTAAGTCCAGACAACTGGACTCTGATAATCACTGGAACCcaaaaactggaaaatttcACTGTCCCACATGCAACAGTGGATATGGGCGTCGTGACACCATGATAGCTCATCATCGTTACGAGTGCGGTAAAGCGCCGCGTTTCAAATGTCCATACTGCCACCTGTGCAGCAAGAAGACCTCCAATATCTACCAACACAGAGATTTTGTTGATGGGGATGAGCTCATTTTGACTTATTGCACATTGATTTCAGAGGCTGTACAGAGACGACTGCATCGCTGTCTTCTGAAGAAACGTTTGGCCCAGGGGGGGAGGAAGTATCAGTGCCCAAAGTGCGCGAAATCATTCTCCCAGAGTTATTCCATGTATCGACACTACAGATATGAGtgcgattcactgccgagatATGGCTGTCCGTACTGCAATTATGTTAGCAAGTGGACACATTCCATCTACAATCACATCAGGAAGATTCATCCGGGGAGGGAGGTCACGGTTAATAGGCATCGTGACGGATATGAGATTGATATAGAGGAGAACGTGATAACTGGATTACGATATGATACTAACGAGACAGAGGGGCATCCTCCCTCGGACCCCCTGGTCGAGGGGGGTAGCTTTTCCTGTCCCAAATGCTCAAGGTGCTTTCGTACGAAGGGGGGCATGCTGAGACATCATAGGATCGAGTGCGTTGATGTACCCAGATTCAAATGTCCACACTGCGATATGAAGAGCAAATACACTCAAGCCATCTATCGACACATCAGATCGAGGCACAAAGGACTCGAGCCCGGATTTATAACtctattttaa
- Protein Sequence
- MRATPEIWLPLLPLSLQKSIECSQLYNNHLPSLQDQTGEYLLRHSKNGPCELVSPVKKFVCPSMCGSSFSHSYSLTRHLKYECGQQPRFKCPYCDLLYKRTSNVTQHIRTRHVNCETYAIDVIDNKIVDDYNWLNDDLLARPQPDFPQPPRSRPRNLTARSRSNYIFTCPNEGCHRSFYWKGSLTWHVKNACGQQPRFKCPYCDYCCKVKSDIRKHINRVHKGSEVYVIELVDTNLKRRYRKRNRLYESRFFCDRCLSSFPSRHNLTRHVKYGCSKELRYKCSYCDMKSQDKYNVYRHVRNQHTGMVVSLTDMYTVIPGDTVYEEVFYCANCPSSFSTRTSLSRHVKYGCNQNLRYKCSYCDMRSKSKYTVWRHVQRQHVGAIVSLDDTYCLVDSTQGWPKSRQLDSDNHWNPKTGKFHCPTCNSGYGRRDTMIAHHRYECGKAPRFKCPYCHLCSKKTSNIYQHRDFVDGDELILTYCTLISEAVQRRLHRCLLKKRLAQGGRKYQCPKCAKSFSQSYSMYRHYRYECDSLPRYGCPYCNYVSKWTHSIYNHIRKIHPGREVTVNRHRDGYEIDIEENVITGLRYDTNETEGHPPSDPLVEGGSFSCPKCSRCFRTKGGMLRHHRIECVDVPRFKCPHCDMKSKYTQAIYRHIRSRHKGLEPGFITLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -