Basic Information

Insect: Psyttalia lounsburyi
Gene Symbol: GFI1
Assembly: GCA_030522865.1
Location: JAPYZN010001413.1:1630-19818[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 2.1e-06 0.00035 21.8 0.9 1 23 204 227 204 227 0.97

2 6 0.00011 0.018 16.4 0.7 1 23 233 255 233 255 0.96

3 6 9.4e-08 1.6e-05 26.1 1.0 1 23 261 283 261 283 0.98

4 6 4.5e-05 0.0075 17.6 4.4 1 23 289 311 289 311 0.97

5 6 8.4e-08 1.4e-05 26.2 2.5 1 23 317 339 317 339 0.98

6 6 2.7e-06 0.00045 21.5 0.5 1 23 345 368 345 368 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	2.1e-06	0.00035	21.8	0.9	1	23	204	227	204	227	0.97
2	6	0.00011	0.018	16.4	0.7	1	23	233	255	233	255	0.96
3	6	9.4e-08	1.6e-05	26.1	1.0	1	23	261	283	261	283	0.98
4	6	4.5e-05	0.0075	17.6	4.4	1	23	289	311	289	311	0.97
5	6	8.4e-08	1.4e-05	26.2	2.5	1	23	317	339	317	339	0.98
6	6	2.7e-06	0.00045	21.5	0.5	1	23	345	368	345	368	0.96

Sequence Information

Coding Sequence: CGATTGTCATTTGGTGTCGGAAGACTAGTAGGTTCTCCATCAACAAGAAGTCCCTcgccctccccctctctcGGTCCTTCCTCTCCCGCGACAGGCCAGAGGGATCAGGAGATTGACGTTGACGGTGAAGAGGATGAggatgaggaggaggaggtggaCGTTGACGTTGAGGAGGTCGGAGATGAGGAGTACCGAGATAACAATACCTCCCCAAGGTCCAGTCATTCGACTCCGTCGCCACCGCTGACCCAAGCTCCATCGCCCATGACACGTCCACAGAGAAAATCAGGTGACAGCTTCAGTGTGTCAGCGTTACTGAGGCCAGACCCTCCATCCAACCGGAACTCCTCGCCAGTTTCACCAGATCAGAATCCAGTGGCACACCAGCCCACACCTGGCATCAGCCTCTACCCACATCTCCACCTGCAGGGTGGACTCCTGCCCCCACATCCACATCATCCATTGTCCTATCTCCATCCCCAGCTACTCCCCCATCATTTGTTACCACCACATCTCCATCCACTTCTGAGAGGTGTTCATCCAGCACATCCTGGAATACATTCGCCACACACTCATGGCCTTCATCATCCACATCCTCTCGGTGATGTCTACAGCTGTGTCAAGTGCGACAAAATGTTCAGCACACCACATGGGCTTGAGGTCCATGCACGGAGATCACATAATGGCAAGCGACCATTCGCCTGTGAACTCTGCAACAAAACATTTGGCCACGAAATAAGTCTCACACAGCATCGGGCAGTGCACTCGGCTGAAAAAGTATTCGAGTGCAAACAATGTGGCAAGGCGTTCAAGCGCTCAAGTACCCTCAGTACTCATCTACTCATTCACTCAGACACACGACCCTACCCCTGTCAATTCTGTGGCAAACGTTTCCATCAGAAGAGCGACATGAAGAAGCACACGTACATCCACACAGGTGAAAAACCCCACAAATGTCAAGTGTGCGGAAAAGCCTTCTCCCAGAGTAGTAATTTGATAACACACTCGAGAAAGCACACGGGTTTTAAACCCTTTGCTTGTGACCTCTGTGGTCGTGCATTTCAGAGAAAAGTTGATCTGAGAAGACACCGTGAGACCCAGCACGCCGAGCTCGGCACTGCACCAACGGCAAATCCACCACATCGTACCTCTATTGGAACAATTGTACCGAGTAATCTCGTAACAGCCAATTCCACGATTCTACAATAG
Protein Sequence: RLSFGVGRLVGSPSTRSPSPSPSLGPSSPATGQRDQEIDVDGEEDEDEEEEVDVDVEEVGDEEYRDNNTSPRSSHSTPSPPLTQAPSPMTRPQRKSGDSFSVSALLRPDPPSNRNSSPVSPDQNPVAHQPTPGISLYPHLHLQGGLLPPHPHHPLSYLHPQLLPHHLLPPHLHPLLRGVHPAHPGIHSPHTHGLHHPHPLGDVYSCVKCDKMFSTPHGLEVHARRSHNGKRPFACELCNKTFGHEISLTQHRAVHSAEKVFECKQCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHRETQHAELGTAPTANPPHRTSIGTIVPSNLVTANSTILQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00048227;
90% Identity: iTF_00728838;
80% Identity: -