Basic Information

Insect: Psyttalia lounsburyi
Gene Symbol: -
Assembly: GCA_030522865.1
Location: JAPYZN010000775.1:12580-15599[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0086 1.4 10.5 0.0 3 23 118 139 117 139 0.96

2 14 0.024 4 9.1 2.3 2 23 144 166 143 166 0.94

3 14 0.0011 0.19 13.3 0.5 3 23 251 271 250 271 0.99

4 14 0.0088 1.5 10.4 1.4 2 23 277 299 276 299 0.93

5 14 0.018 2.9 9.5 7.4 1 23 335 358 335 358 0.97

6 14 2.3 3.9e+02 2.8 0.8 2 22 372 392 371 393 0.80

7 14 7.7e-06 0.0013 20.1 0.4 1 23 401 424 401 424 0.96

8 14 1.2e-05 0.002 19.4 4.0 1 23 430 452 430 452 0.98

9 14 0.012 2 10.0 0.8 2 23 456 478 455 478 0.94

10 14 9e-05 0.015 16.7 1.4 1 23 488 510 488 510 0.98

11 14 9.6e-05 0.016 16.6 2.4 2 23 517 538 516 538 0.97

12 14 6.7e-06 0.0011 20.3 5.1 1 23 543 565 543 565 0.97

13 14 6.8e-05 0.011 17.1 0.8 1 23 573 595 573 595 0.98

14 14 9.5e-05 0.016 16.6 1.3 1 23 601 624 601 624 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0086	1.4	10.5	0.0	3	23	118	139	117	139	0.96
2	14	0.024	4	9.1	2.3	2	23	144	166	143	166	0.94
3	14	0.0011	0.19	13.3	0.5	3	23	251	271	250	271	0.99
4	14	0.0088	1.5	10.4	1.4	2	23	277	299	276	299	0.93
5	14	0.018	2.9	9.5	7.4	1	23	335	358	335	358	0.97
6	14	2.3	3.9e+02	2.8	0.8	2	22	372	392	371	393	0.80
7	14	7.7e-06	0.0013	20.1	0.4	1	23	401	424	401	424	0.96
8	14	1.2e-05	0.002	19.4	4.0	1	23	430	452	430	452	0.98
9	14	0.012	2	10.0	0.8	2	23	456	478	455	478	0.94
10	14	9e-05	0.015	16.7	1.4	1	23	488	510	488	510	0.98
11	14	9.6e-05	0.016	16.6	2.4	2	23	517	538	516	538	0.97
12	14	6.7e-06	0.0011	20.3	5.1	1	23	543	565	543	565	0.97
13	14	6.8e-05	0.011	17.1	0.8	1	23	573	595	573	595	0.98
14	14	9.5e-05	0.016	16.6	1.3	1	23	601	624	601	624	0.95

Sequence Information

Coding Sequence: atggattcaAAGGTGAAGTCCGTTAAACCCTGCAGAACCTGTCGACTGTGTTTAAAAACAGGTGCCACTTATCGTTCACTCTATGaagataaaaacaaaatagcCGACAAAGTTAGCAAGTGTTTACCAATTCTGGTGACTCCGAATGACGAATTACCCAGTCACATATGTCCCCTGTGTCTTCGCTCCCTGAATATCAGCTACAAGCTGCTGATCCAAGCGATAGAGACAGACGGGAAGCTGCGGAAGCAGTTGTCAGAATCCCAAGCTGCAAGACTTCTGCATGAGCCAAGAGCAGTCGTCCTCAGGCCGCCGGGCATTCCGGGAATGGCGCTAGCCAATCGGGCCATATGTGGAATCTGCGAAATTCGGTTCGACGACGCTGATGCCTTTGATAGTCACATGGAGATGTTCCACCAGTCCAAGTGGGTCTGTAATCTCTGCGAAAATAATTTCGCCACCTCTGAGGAACTTCTCCACCACAAGCACAAAAGCCATTACGACAACAGCGAGGAAACTGCCCAGGAGGTCTGCATTGACTCGGGAACGATTGATATAAAGGAGGAGAAGATATGCTCGGCTTCGGAACACTCTGATGGTGAACGTTCGTCTCTTCCGGACGTGGAGGCCTGCGAGAGACCCCAGAATAAACCCAAAAAACGAAAGCTGGAAAAACAAAAGCAAAAGGACAAGGCCGAGGTAAATGACGAATCTGATCCGAATAGGAAGGACATGTTGAGGCAAAATCTGTGCAGCGACTGTGGTATTACCATGGATCACGAGTCGGCTCTGACTGAACACATGAAGATGCATGAACCCTACGACGTGGAATGCGCCGAGTGTCAAGCTAAATTCAAAAACGCTTACGATTTCTGTGTGcacaaaaaagattttcatAATGATTATCGCGGAAGGGATATTAAGTTCTTCTGCAAATTCTGTAATCGAATGATGTGGGACCTGAGGGCTCTGAAGATCCACCACAACGGCAAGAAGCACAGGCACAAGTGCAAGTACTGCTTCGAGAATTTCTGCTTGAAAAAACTTCTCAGGCTCCATCAGAATAAGGTGCATCGTCAGGCGATGATGGAGGATGAGACTGTGGTAAAAATGAGCTGTGAGTTTTGCAAGAAACTTTTTGTCGACAAGAAGATCTTTTATGATCATGTGTATCTACACAGTAGATCTTTGGTTTATCGATATCAATGTAAATTCTGTGAGAAGGACTTCGCCAGTGCGtcgtcattgaaaaatcacgttGAATCGGCGCAtgataaaattcataaatatgAGTGTCGGACTTGTAAGAAGAAATTCTATAATAAGAAGAATTTGCAAACACATGAGCGAATTCATTTGAAACTTAACTGCAAACGTtgcaaacaaaaatttgataCCGTTGACCTTGTTAATCAACACATGAAGGATGTTCATGATATaccattgaaaataaaacgcATGTACAGCTGTCCACAGTGCGACAGAAAATTCACCAGGCGAAGTATTATGGAGGACCACAGAAATACTCACAGTGGAAAAACACCACAGACTTGTCCaatttgtcataaaaaattcagGACATACTCAGCACGCTGGGCGCACTATCAAAGACATGGCTCCAACGGATTTTTCTGCGATTATTGTCAGAAAAAGTTTATCAACAAGAAGCATTTGCAAACGCATATAATGAGTCATCGCCCGCCCGAGGAGTGGAAGTACATTTGCGAAGTATGTGACGCTCGATTTCCCCAGAGCTTTCGACTCACGAACCACAGGAGAAAACACactggagagaaaaaatacttgTGCGACGCGTGTGGCTCGAAGTTTGTCCAGAAATCCCACCTCGATAAGCACATTAGAAAAGTCCACATGACTCAAGAGCCGCAGGAACAAGTAGATCaagataattga
Protein Sequence: MDSKVKSVKPCRTCRLCLKTGATYRSLYEDKNKIADKVSKCLPILVTPNDELPSHICPLCLRSLNISYKLLIQAIETDGKLRKQLSESQAARLLHEPRAVVLRPPGIPGMALANRAICGICEIRFDDADAFDSHMEMFHQSKWVCNLCENNFATSEELLHHKHKSHYDNSEETAQEVCIDSGTIDIKEEKICSASEHSDGERSSLPDVEACERPQNKPKKRKLEKQKQKDKAEVNDESDPNRKDMLRQNLCSDCGITMDHESALTEHMKMHEPYDVECAECQAKFKNAYDFCVHKKDFHNDYRGRDIKFFCKFCNRMMWDLRALKIHHNGKKHRHKCKYCFENFCLKKLLRLHQNKVHRQAMMEDETVVKMSCEFCKKLFVDKKIFYDHVYLHSRSLVYRYQCKFCEKDFASASSLKNHVESAHDKIHKYECRTCKKKFYNKKNLQTHERIHLKLNCKRCKQKFDTVDLVNQHMKDVHDIPLKIKRMYSCPQCDRKFTRRSIMEDHRNTHSGKTPQTCPICHKKFRTYSARWAHYQRHGSNGFFCDYCQKKFINKKHLQTHIMSHRPPEEWKYICEVCDARFPQSFRLTNHRRKHTGEKKYLCDACGSKFVQKSHLDKHIRKVHMTQEPQEQVDQDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01273295;
90% Identity: iTF_01273295;
80% Identity: -