Basic Information

Insect: Psyttalia lounsburyi
Gene Symbol: -
Assembly: GCA_030522865.1
Location: JAPYZN010002621.1:3374-5925[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00026 0.043 15.3 3.9 1 23 267 289 267 289 0.98

2 11 0.022 3.7 9.2 11.8 1 23 295 317 295 317 0.95

3 11 5.9e-05 0.0099 17.3 6.6 1 23 323 345 323 345 0.99

4 11 0.00041 0.068 14.6 1.6 1 23 351 373 351 373 0.95

5 11 1.7e-06 0.00029 22.1 2.3 1 23 379 401 379 401 0.97

6 11 3.9e-05 0.0066 17.8 0.3 1 23 407 429 407 429 0.97

7 11 0.00084 0.14 13.6 1.5 1 23 434 456 434 456 0.97

8 11 1.7e-05 0.0029 19.0 0.0 1 23 462 484 462 484 0.97

9 11 4.1e-05 0.0068 17.8 0.2 2 23 495 516 494 516 0.96

10 11 5.3e-06 0.00088 20.6 2.5 3 23 584 604 582 604 0.96

11 11 2.6e-05 0.0043 18.4 4.6 1 23 614 636 614 636 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00026	0.043	15.3	3.9	1	23	267	289	267	289	0.98
2	11	0.022	3.7	9.2	11.8	1	23	295	317	295	317	0.95
3	11	5.9e-05	0.0099	17.3	6.6	1	23	323	345	323	345	0.99
4	11	0.00041	0.068	14.6	1.6	1	23	351	373	351	373	0.95
5	11	1.7e-06	0.00029	22.1	2.3	1	23	379	401	379	401	0.97
6	11	3.9e-05	0.0066	17.8	0.3	1	23	407	429	407	429	0.97
7	11	0.00084	0.14	13.6	1.5	1	23	434	456	434	456	0.97
8	11	1.7e-05	0.0029	19.0	0.0	1	23	462	484	462	484	0.97
9	11	4.1e-05	0.0068	17.8	0.2	2	23	495	516	494	516	0.96
10	11	5.3e-06	0.00088	20.6	2.5	3	23	584	604	582	604	0.96
11	11	2.6e-05	0.0043	18.4	4.6	1	23	614	636	614	636	0.97

Sequence Information

Coding Sequence: ATGTGCACAACACCTGGCAATGCTGGCACTGGTTTTGGGTATGCGTGGTCATTCAATCCTACAAATGAGGGCAGAGAGACCAGTCAAACAGACCTAACGGCAAACATAAATTATGCTGTCAATAATAATCAGGATCAGGGCACGAGTCAGAAGATTCAGGCTGATGTCAAGCCCAAAGTAGGCAATGCCAATCAACCTGGACACAGAAGACAGGTCTTTCAGATGACCGACAACTGTCAGACCACccaacagcagcagcaacagcaacagcaacaacagcaacagcagcagcaacagcagcaacagcaacaacaacagcagcaacaacagcaacagcatCATCAGCAGGCTGGTGCTGGTGGTGGTACAAGCACTGGAGCCCACAATCAAACCCACAACACCCATCCAACTCACGTCACTCATGTACGTACAAAAAAACATCACGATGTCTTCTCCCTCACCTGCGACAAGGGTGGCTGCAACTGCGACGCATCACACACAACACCAGCCCCAGCAATATTTCCCAATACCCTTGTTTTCACGACAACCGACAAGCACGCAATGAGCAAACACTTTATGACCCCCATTGGTCCAATTCAGCTAACAGCCGAGGAGTGCAATGAGATTCTCATGAAACGAGCTGCTGCTGCATCGAGTCAAGCCAACACGAATAACGTCAATCAGAATCAGGAGGCCCACTTTGGTCACGTATTGACACACGTTAATACAACGCCAATTGACACGAAGGTGAAGCAACAGGACATGGGGAGTCAGGCGAGAGTGCCCAAGGAGAGGCCCTACTCGTGCTCAGAGTGTGGCAAGTCATTTCTCCTCAAGCATCATCTCACCACCCATGCAAGAGTACATACGGGTGAACGTCCACACATCTGCGTACACTGTGGCAAGAGTTTTGCCCATAAACACTGTTTGCATACACATCTTCTTCTTCACAGCGCTGAGCGACCCTATCAGTGTCGTGAATGTAAAAAGTCGTTTACGTTGAAGCATCACTTGGTGACACACACGAGGGTCCACACCAGGGAGAGGCCATTTGTATGTCAGGAGTGTGGTAGGGCATTTCCGTTGAAGAGACACCTGGTGACACACAGTAAATTTCACTCCGGTGAGAGACCATTTGTCTGCTCTGAGTGTGGTGAATCATTCTCCCAGAAGGATCATCTCACAATGCACTCGAGATTCCATGGGAGTTTGCATCCATTCGTTTGCTCGGACTGTGGTGCTACATTTCAACGAAAGTTTGAGCTGGTTAATCATGGTAGACTGCATGGCAGGGTGCCCCATTCGTGTACAGCGTGTGGCAAGGAGTTCCTCCAGAAGAGAACGTTGCTGGCACATATGCGTCTTCATACTGGCGAGACACCATTTGCCTGCACTGTCTGCGGTGAGGCTTTCCCAAGGAAGGCCGATCTCGTGGCACACTCCAAGATGCACAATGCCACCAACACCGATGACAAGTCACTCACATGCAGGGAGTGTGGATTGGACTTTTCTAATCGGGAAGCCCTTACTTTGCATTTGAGGTTACACTCGGGGGACAGGACACTGGTCACTGATCTCTGTGGACTCGCTGCTGCCTTCCAGCAGACACCTGGACACTTCCTCACGCCCAATGCCACGGGAGCCCATCAGTTAAACGGACCAATCGGCGCACCAGGTGTATCCCACATGCAGAGCGCGACCCAGACCTCGCCACCGGCAGGCAGTGGTCCAAAGCCCAAGCCCCACTTGTGCCCAGATTGTGGTCGTGGCTTTGCCCAGAAGCACGGATTGTCACAGCACCAGAGACGTCACAGCGACGGCAGCTGTCACATAAGATCGCACGTCTGTGATAAATGTGGCAAGGCATTCTTCCAGAAGAATCACCTGCTGCTGCACCAGCGCCAGCACATGGATCCACCACCAAGCATACTGAGGCAACAACAGCGACAGGCTGCACAGGCTGCCGCCCAAGCTGCCCAGCAGGGGACCCAGCCGCAGGGCCAGGTACAGCAGCAGGTCCAGCcccagcagcagcagcagcagcagcagcagcagcagcctCAGCAGCAACAGGTACAGCAGGTCCAGGTGCAGGTGCAGCAGAATCAGCAGACGTGTACTGTTGACACTAAAGCCATTCAGATGCAGACTATCGAGCAACAAGTGCAGGAACAGGTGCAACAGCAGGTGCAACAGCatcaacagcaacagcaacaacaacagcagcagcaacagcagcatcAGCAGGCGTGCAATGAGGACACGAAGGCGATACAGTTGAATGTTACCATGTGA
Protein Sequence: MCTTPGNAGTGFGYAWSFNPTNEGRETSQTDLTANINYAVNNNQDQGTSQKIQADVKPKVGNANQPGHRRQVFQMTDNCQTTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHHQQAGAGGGTSTGAHNQTHNTHPTHVTHVRTKKHHDVFSLTCDKGGCNCDASHTTPAPAIFPNTLVFTTTDKHAMSKHFMTPIGPIQLTAEECNEILMKRAAAASSQANTNNVNQNQEAHFGHVLTHVNTTPIDTKVKQQDMGSQARVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHICVHCGKSFAHKHCLHTHLLLHSAERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPFVCSECGESFSQKDHLTMHSRFHGSLHPFVCSDCGATFQRKFELVNHGRLHGRVPHSCTACGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKADLVAHSKMHNATNTDDKSLTCRECGLDFSNREALTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNATGAHQLNGPIGAPGVSHMQSATQTSPPAGSGPKPKPHLCPDCGRGFAQKHGLSQHQRRHSDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQAAQQGTQPQGQVQQQVQPQQQQQQQQQQQPQQQQVQQVQVQVQQNQQTCTVDTKAIQMQTIEQQVQEQVQQQVQQHQQQQQQQQQQQQQHQQACNEDTKAIQLNVTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00351349;
90% Identity: iTF_01273272;
80% Identity: -