Plou003889.1
Basic Information
- Insect
- Psyttalia lounsburyi
- Gene Symbol
- -
- Assembly
- GCA_030522865.1
- Location
- JAPYZN010000650.1:18339-22805[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.1e-05 0.0018 19.6 3.3 2 23 125 146 125 146 0.97 2 17 0.001 0.17 13.4 1.4 2 23 151 172 150 172 0.97 3 17 0.0028 0.47 12.0 1.7 2 23 179 200 176 200 0.94 4 17 2e-05 0.0033 18.8 1.3 1 23 206 228 206 228 0.97 5 17 1.9e-06 0.00032 21.9 2.0 2 23 238 259 237 259 0.97 6 17 4.8 8e+02 1.8 0.2 3 23 267 286 266 286 0.73 7 17 8.8e-07 0.00015 23.0 1.3 3 23 294 314 293 314 0.97 8 17 7.3e-08 1.2e-05 26.4 2.6 1 23 398 420 398 420 0.99 9 17 0.00035 0.059 14.8 0.4 2 23 427 449 427 449 0.96 10 17 1.4e-05 0.0023 19.3 0.8 1 23 455 477 455 477 0.97 11 17 0.03 5 8.8 0.4 1 23 481 503 481 503 0.97 12 17 6.1e-05 0.01 17.2 1.8 3 23 511 531 509 531 0.97 13 17 0.0013 0.22 13.0 0.1 1 23 537 559 537 559 0.97 14 17 0.04 6.6 8.4 1.8 1 23 566 588 566 588 0.97 15 17 2.2e-07 3.6e-05 24.9 0.8 1 23 594 616 594 616 0.99 16 17 5.2e-07 8.7e-05 23.7 0.8 1 23 622 644 622 644 0.98 17 17 3.8e-06 0.00064 21.0 1.1 1 23 650 672 650 672 0.98
Sequence Information
- Coding Sequence
- ATGGCTATGCCGGTTCCAGAACTGTTTTGCGTGGCCGTatCCAGAATCAAAGACGAGAAAGTAACAGATTCCAGCAATGTTGCGTCAAAAGTAACCAAAGTAGCTGCTGAGGCGCAGAAATCCCAACTACAGATGCCAAAACTTCAGCCTTTGACACAAACATCCCAGCCACAGATTCAAACATTCCAGCTATTGATTCTGAATCCCCAAGTACTCTTTCAGCACTCTCAGCAAAAAACCAGCACAACTCAGCAATCGATTAAAACCCCCCAgcaatcgaatcgaaaatccGAACTTCCACTTCCAAAGCTCGTTCAAATAAAACGCAAAAGAAAACGTAGAACCCCGTCACCTGAGAATCGCGAAGACAACAGATGTACAATTTGCAATAAAACATTTAAGAGAAGAACTTACCTGAATTATCACATAACGAGACACAGTTCGTCATTGACGTGTCATATCTGCGATGAAAAAATGCCATCGAAATATTACCTACAGCTTCACGTTCGTAGGCACAACAAAGAGTACACTTGCTTTTGTCCAGTTTGCAATAAAGGCTTCTACATAAAGGCCTCCATGGAGTACCACATGTCCAAGCACACAGATGAAAAACCCTTTCACTGCGAAATCTGCAAGAAGTCTTTTGGTAATAAAGTTTATTTGGGAAAACACATGGCAATCCACAAACCACCGCCCGAGGGAGAGAAAATCACTTGCAATATCTGCGATTATTCCACGACTCGCAGCGATTACTACAAGAAACACATGCGAAAACACACGGGAGAGAGTAAAAAACCCTGCgaattttgtggaaaattaataacaagGAGCTACATGCCAGTTCACGTGCGTACTCACACtggggagaaaaatgaaatgtgtgaattttgtggaaaaactTTCAGTTCCAAGGCATATCTTGTGACACACAGGAGAACACACACTGGAGAACGACCTTTTGAATGCCTTCGAGAAGAGGACCTAGTATACTCTCAACCCGAGTCATTAAACGTAGAATACCAGTTATACACGATAGAAACTGATGCCGAAGATACCGAGCTGTACGAAATAATTCAAAACGAGGAGGAAATGGAATTGACAGAGGCTTCCTTGATGGACCCATTGTCGTCCTCGGGGTCTCGGGCACCCACAAAATCCTCCAACCCCTCCCCAAAACCTCTGATAGTGTGGTACCAGTGTCCGTACTGTCCGAAAAAATTTCGCAAGAGAGATCAGTATACGAGGCACTTGAGGATCCACGAAGAGTCGTCAGGAGGTACTTGTTCTCAATGCGATCGTCAATTCCCGAGTGACGAGAAGCTTCAGAAGCACATAATTAAGGCTCACCAGAACGACAGGCCCTTTCCCTGCCAGCTCTGCGGGAAGGCCTTCAAGACCGAggagtttttgaaaatccaCACGAAACAGCACAACAAGAGATTCACCTGCGACATCTGTGGCATCTCAAAGGTCTCGGGTTACGACCTACGACTGCATAAGAAGAGGCACAATCAGGAGTATACAACCTTCTGTGGCATATGCCACAAGGGGTTCTACACAAATCAAACTTTGGAGAGACACGTGCTAACTCATACTGGGGAAAAACCTTTTATCTGTAAAATATGCAACAGTGCTTATGCGAGTGCAGCCTATCTCAGCACTCATGTCAAGTCTCATGGGATCCAGAGGGAGAAGCACAAGTGCAATGTCTGTGATTTCGAGAGCCACTGGAAGGCTGCATTGAAAGTTCATATGAGAATACACACTGGCGACAATCAATACACCTGCGACACGTGTGGAAAATCAGTGTCCAGTAAGACTTATCTCAGAATTCATATGAGAATTCACACTGGGGAGAAACCTCATGTCTGCGAGATTTGTGGAAGGGCTTTCAGTGTCAAGAAGTACTTGATGGTGCATCTGAGGACACATACTGGAGAGAAACCATATGAGTGCAGAGTATGTCAGAAGAGGTTCTCACAGCAAGGCAGTTTGAATTCACATGTGAAATTACACAATGAGAGGACTTAA
- Protein Sequence
- MAMPVPELFCVAVSRIKDEKVTDSSNVASKVTKVAAEAQKSQLQMPKLQPLTQTSQPQIQTFQLLILNPQVLFQHSQQKTSTTQQSIKTPQQSNRKSELPLPKLVQIKRKRKRRTPSPENREDNRCTICNKTFKRRTYLNYHITRHSSSLTCHICDEKMPSKYYLQLHVRRHNKEYTCFCPVCNKGFYIKASMEYHMSKHTDEKPFHCEICKKSFGNKVYLGKHMAIHKPPPEGEKITCNICDYSTTRSDYYKKHMRKHTGESKKPCEFCGKLITRSYMPVHVRTHTGEKNEMCEFCGKTFSSKAYLVTHRRTHTGERPFECLREEDLVYSQPESLNVEYQLYTIETDAEDTELYEIIQNEEEMELTEASLMDPLSSSGSRAPTKSSNPSPKPLIVWYQCPYCPKKFRKRDQYTRHLRIHEESSGGTCSQCDRQFPSDEKLQKHIIKAHQNDRPFPCQLCGKAFKTEEFLKIHTKQHNKRFTCDICGISKVSGYDLRLHKKRHNQEYTTFCGICHKGFYTNQTLERHVLTHTGEKPFICKICNSAYASAAYLSTHVKSHGIQREKHKCNVCDFESHWKAALKVHMRIHTGDNQYTCDTCGKSVSSKTYLRIHMRIHTGEKPHVCEICGRAFSVKKYLMVHLRTHTGEKPYECRVCQKRFSQQGSLNSHVKLHNERT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01273253;
- 90% Identity
- iTF_01273253;
- 80% Identity
- -