Plou003888.1
Basic Information
- Insect
- Psyttalia lounsburyi
- Gene Symbol
- -
- Assembly
- GCA_030522865.1
- Location
- JAPYZN010000650.1:14296-18098[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 5.1 8.6e+02 1.7 0.1 13 23 42 52 40 52 0.87 2 22 0.0018 0.3 12.6 3.4 1 23 95 117 95 117 0.92 3 22 5.3e-06 0.00089 20.6 2.8 1 23 123 145 123 145 0.98 4 22 2.4e-07 4e-05 24.8 0.4 1 23 151 173 151 173 0.98 5 22 0.00078 0.13 13.7 4.3 2 23 180 202 177 202 0.88 6 22 6.8e-06 0.0011 20.2 4.4 1 23 207 229 207 229 0.97 7 22 7.7e-06 0.0013 20.1 1.2 1 23 238 260 238 260 0.98 8 22 4.1e-06 0.00068 20.9 0.9 1 23 266 288 266 288 0.97 9 22 1.7e-05 0.0028 19.0 1.4 2 23 295 316 294 316 0.97 10 22 1.3e-05 0.0022 19.3 5.0 1 23 322 344 322 344 0.98 11 22 0.025 4.1 9.0 0.6 1 23 396 418 396 418 0.91 12 22 2.3e-06 0.00038 21.7 1.8 2 23 427 448 427 448 0.98 13 22 4.9e-06 0.00082 20.7 5.4 2 23 468 489 467 489 0.96 14 22 0.00022 0.037 15.4 5.5 2 23 495 516 494 516 0.97 15 22 0.0012 0.19 13.2 0.1 1 23 521 543 521 543 0.98 16 22 8.6e-06 0.0014 19.9 2.7 1 23 551 573 551 573 0.98 17 22 0.034 5.6 8.6 2.0 1 23 579 602 579 602 0.94 18 22 0.0002 0.033 15.6 0.3 3 23 615 635 613 635 0.96 19 22 5.6e-06 0.00094 20.5 2.0 1 23 641 663 641 663 0.96 20 22 2.9e-08 4.9e-06 27.7 0.2 1 23 669 691 669 691 0.98 21 22 2.3e-07 3.8e-05 24.9 0.9 1 23 697 719 697 719 0.98 22 22 0.00051 0.085 14.3 1.7 1 21 725 745 725 746 0.96
Sequence Information
- Coding Sequence
- ATGCAGACTGAAAAGTCCTTGAAAGTTCACACGAAACAGCACATCAAGAGATTCTCCTGTGGTGTCTCCAAGGTCTCGGGGAAAAGGTCTTTACCTGCAAAATATGCAAGTGTTGATGCCAGTGCAGCCTATCTCACCACCCACATCAAGTCTCATGGGATCCGAAGGGAGCAGTACTGCAAGGCTATAGTAAAGGTTCACGAGACGGATCGTTTAAGAAAAGTCTCTCCCAAGTTGCTCTCACCACGAAAGACCACGACCCCACCCCCATCATCCAGCACATACACCTGTAAAATCTGCAAAAAACACTTCAAAACTAAAAACCTGTTCGACGGTCATCAAGTGGCCCACAGCGATGCACGTCCCTACCACTGTGACATATGCAACAAGTCGTTCAAGCGCACAAATACTCTAGCTGTTCACCGGAGAATTCACACGCGAGAGCGCAATTTCATTTGTGACGTATGCGGTCGTGCATTCACACAAACATCTCAATTGGCGACTCATCAAAGACGTCACTTTGACAAATACATGTGCCACTGTGAGCAGTGTGGCAAGGGCTTCTTTACTAATGCTGAATTGCACGGCCACATGAACATAAAACATGGAGCGAAACAGCATGTTTGTCACTTGTGTGACAAAGCATTTCCGAATAATCATACACTCGCTCGTCACCTGAAGATGCATGATCCCAACTTTAAGCCCATTAAGCACCAGTGTGAATTCTGTGGCAAGGTATTTGCGTATAAAAATTCACTGGTTGTGCACGTGAAATCACACACGGGAGAGAACAAATACGACTGCCATCTCTGTGGAAAGTCAGTGTCTTCTCGAGGCTCGCTGCAGGATCATTTGAGACTTCATGGGGGTGAAAAGTCACTGGTCTGCGATGTCTGTGGAAAAGCCTTCCACAAGAAAACCACTCTAATCGTTCATAAACGAACACACACTGGGGAAAAACCGTACATTTGTGATAATTGCGGAAAGTGTTTCACTCAGCATTCGACCCTCGTTATTCACAAACGATATCATACTGGACAACGACCCTATCAATACCTGCAGGTGGCCCTACCTCCATCGTACGATTCACCCGAGGGACACCCCTCGACCCCTCCCAGCAATATGCACCCAGAAGACCCGATAAAGACTGAGGAGTTTCAAAATCAGGAGGACATGCCCCTGGCCTACCACTGCCAGCCCTGCGGTATGTTCTTCCCTTCCCAAGACCTCCTGGAGACTCACAATCTGGATCATTCCCACAAACCCAAGCGAAAAAATACCTGTGATACCTGCGGACGAGTGTTCCGTACTGCTCTAACTCTGAAAAAACATATGAAGAAGCATACGATGAAGAAAGCCAAGCCCCAGACCTCGAAAAAGGATAAAGCCGAGGTAGAGCTGGAATGTGACACTTGTAAGAAGACATTCCGCCACAAGAGTAACTTCCAAAAACACCTCTTGAGACACACAACAGGTGAATTATCCTGTAAACACTGCAATAAAAAGTTCAGACTGTACAGGGACCTCACGAGACACGAAAAGACTCACTTCTTTCCCAGTTACATGTGCAAAGAGTGCGATTACGAAACGACAGTGCTCGCTGCTCTGAGCATTCACATGTCTAGGCATATGGACAAGGCAGATCTTCCATTCAAGTGTCACGAGTGTGACAAGAGATTTCGAAAAGCGCTTGATCTTCAAGAGCACTATAATATTCACTCAGGGGATAAGCCCTTCGTCTGCCAGGTCTGCGGGAGTGCGTTTTACCTCAAGAGACAACTGTCCGCCCACTGCAGGAGGAATCACCCTGAAATGAAAGCGAATAAAGTCACTAGTACAGCTTGCGACATCTGTGGGAGAGTTTTGGCCACGAAGAGATCCCTTTTCAGGCACAAAGAGAGCCACAATCCCACCAAGTTGTATCTCTGTGACTTCTGTGGGAAGAGCCTGAGCTCTGCTGAACACCTAAAGAAACACAGAAGAATTCATACTGGGGAGAAACCTTATGTTTGCGATATCTGTGGAAAAGGTTTCACTGATTCAGAGAATCTGAGGATGCATAGGAGGGTGCACACCGGAGAGAAACCCTACAAGTGCGATCAGTGTCCCAAGGCCTTCTCTCAGAGGAGTACTCTGACGATACACAGGCGGGGACATACTGGAGAACGTCCTTATGTCTGCCAGATTTGTCACAGAGGATTCTCTTGTCAGGGCAATCTCACTGCCCATCAGAAGAGTACATGTGTTTAA
- Protein Sequence
- MQTEKSLKVHTKQHIKRFSCGVSKVSGKRSLPAKYASVDASAAYLTTHIKSHGIRREQYCKAIVKVHETDRLRKVSPKLLSPRKTTTPPPSSSTYTCKICKKHFKTKNLFDGHQVAHSDARPYHCDICNKSFKRTNTLAVHRRIHTRERNFICDVCGRAFTQTSQLATHQRRHFDKYMCHCEQCGKGFFTNAELHGHMNIKHGAKQHVCHLCDKAFPNNHTLARHLKMHDPNFKPIKHQCEFCGKVFAYKNSLVVHVKSHTGENKYDCHLCGKSVSSRGSLQDHLRLHGGEKSLVCDVCGKAFHKKTTLIVHKRTHTGEKPYICDNCGKCFTQHSTLVIHKRYHTGQRPYQYLQVALPPSYDSPEGHPSTPPSNMHPEDPIKTEEFQNQEDMPLAYHCQPCGMFFPSQDLLETHNLDHSHKPKRKNTCDTCGRVFRTALTLKKHMKKHTMKKAKPQTSKKDKAEVELECDTCKKTFRHKSNFQKHLLRHTTGELSCKHCNKKFRLYRDLTRHEKTHFFPSYMCKECDYETTVLAALSIHMSRHMDKADLPFKCHECDKRFRKALDLQEHYNIHSGDKPFVCQVCGSAFYLKRQLSAHCRRNHPEMKANKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCQICHRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -