Plou002368.1
Basic Information
- Insect
- Psyttalia lounsburyi
- Gene Symbol
- ttk
- Assembly
- GCA_030522865.1
- Location
- JAPYZN010000291.1:49694-52590[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0082 23 5.8 0.0 22 40 213 232 197 236 0.78 2 4 1.4e-11 3.9e-08 33.9 0.0 5 39 247 280 244 284 0.92 3 4 0.0055 16 6.3 0.0 21 34 314 327 301 332 0.86 4 4 1.9e-12 5.3e-09 36.6 0.1 4 39 358 393 356 398 0.89
Sequence Information
- Coding Sequence
- ATGTCAGAACAAACTGGTAAACCTCAAAGTGATCAGAGCTATTGCTTCAAATGGGAGAATTATCAAAATCATTTGTCAACGGTAGTGGGACAATTGCTGGAGGACAACTCCATGGTAGACGTTACGCTGGCTGTTGCTGGAGAGCGCATCCATGCACATCGCATTGTATTATGCGCCTGCAGTACTCTATTCCAAGAAATTTTGAGCGAAACGACGGAGGATCATCCTACCGTTATCATCAGTGACATATCGGCAGCTGATGTCAGGTCTATTGTGGAGTTTTCGTATCAGGGAGAAGTTAGAATACCTGTCGACAATATAAATAACTTGTTGGACGCTGCACAGCTGTTGAGAATAAGTGGATTGATGGAGATCGAAGGACTTGACGAGCATGATACAGCTAGCAGTAAGGTTCTGACCGAAGAAGTAGATCAAGAAATTCCATCGGATCGTGAGGGGAGGGTGACAGAGAACGCAGTTGAAACGCAAACGGACGAGGATGCGGGTGTCGACGAGGAAGAgtcaggtgaaaaaaaaaaagacaaaaaaaggCGAGATCCCTTAAGGAAGGAGTACAATGATGTCATGCTGGATACAGCTATAAATGACTTGAAGGATGGAAAAACGTTGATTGAGGCCTCTGTTAAGAATCACATACCGAGATCAACGCTTTACATGAAAGCCAAGGCCCTCGGCATTCAGTTGCATGCAGCCCGAAACGAATATCCAGCTGAGTGTATGCAGTCTGCTATAGACACAGTTCTTGGTGGTGCAAGTCTACAGCAAGCAGCCGAAATGTATGGAATACCGAAAACTGTTCTCTGGAGACGAATACAAAAAGAAGGATTCCAAATAACCAGAGCAGAGACGAAGAGGCAATATGCCTCTGAAAAACGACTCGCTGCTGTTAAAGCGCTTGAGAGAGGAGAAAGACTTACAAAAGTCTCGAATGAATTTAATataCCCAAAACGACATTATTTCGTGATAAAGTTAAACTAGTAGACGAGGGAAAATTGCCAGAATCATTTTGGAAGAGACGACAAACTGACGACGATGGCTTGAAAAAGAGTAGACTTGAAAAGGCAGTGGCTGCCTGCAAAGACGGTAGAATGTCCCAAGCGGCAGCTGCTACACTCTATGGCATACCGAAGACTACGATTTGGAGGAAATTGCAGCAAACCAGTGAGAAGAACGACGACAACACAAGCCCGCCAATTtcaaagagaagaaaaaaagattgtCTTCAAATTAAGAATGAAAATGCTGGAGGTGACTTTGCTCTGTGTGAAGTCGCTTCGGAGATACCCATAACGTACATCGATGAGGACAATATTCCCCAAAACTCAGTAATAATATTAGCAACAGAAGATGTCGACGACCTCAATTTAGAGGACAATCGttcaataattgtcaatgCAGATTCTGGCCAAGAGTATATCCCTTGTTCAATAAGGATCGACGAGAGTACAAACTACAATCCAGAAGAGAGTTAG
- Protein Sequence
- MSEQTGKPQSDQSYCFKWENYQNHLSTVVGQLLEDNSMVDVTLAVAGERIHAHRIVLCACSTLFQEILSETTEDHPTVIISDISAADVRSIVEFSYQGEVRIPVDNINNLLDAAQLLRISGLMEIEGLDEHDTASSKVLTEEVDQEIPSDREGRVTENAVETQTDEDAGVDEEESGEKKKDKKRRDPLRKEYNDVMLDTAINDLKDGKTLIEASVKNHIPRSTLYMKAKALGIQLHAARNEYPAECMQSAIDTVLGGASLQQAAEMYGIPKTVLWRRIQKEGFQITRAETKRQYASEKRLAAVKALERGERLTKVSNEFNIPKTTLFRDKVKLVDEGKLPESFWKRRQTDDDGLKKSRLEKAVAACKDGRMSQAAAATLYGIPKTTIWRKLQQTSEKNDDNTSPPISKRRKKDCLQIKNENAGGDFALCEVASEIPITYIDEDNIPQNSVIILATEDVDDLNLEDNRSIIVNADSGQEYIPCSIRIDESTNYNPEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00438200;
- 90% Identity
- iTF_01273890;
- 80% Identity
- iTF_01273890;