Basic Information

Insect: Psyttalia concolor
Gene Symbol: Clamp
Assembly: GCA_030522845.1
Location: JAPYZM010001380.1:2357-7320[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.4e-05 0.0023 19.3 2.5 1 23 207 229 207 229 0.98

2 8 0.0035 0.59 11.7 0.4 1 23 260 283 260 283 0.93

3 8 8.6e-05 0.014 16.8 2.6 1 23 382 404 382 404 0.97

4 8 1.2e-05 0.0019 19.5 0.1 1 23 410 432 410 432 0.98

5 8 2.1e-06 0.00035 21.9 1.7 1 23 438 460 438 460 0.98

6 8 4.4e-07 7.4e-05 24.0 1.9 1 23 466 488 466 488 0.99

7 8 1.7e-05 0.0028 19.1 1.5 1 23 494 516 494 516 0.98

8 8 4.4e-05 0.0073 17.7 0.6 1 23 522 544 522 544 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.4e-05	0.0023	19.3	2.5	1	23	207	229	207	229	0.98
2	8	0.0035	0.59	11.7	0.4	1	23	260	283	260	283	0.93
3	8	8.6e-05	0.014	16.8	2.6	1	23	382	404	382	404	0.97
4	8	1.2e-05	0.0019	19.5	0.1	1	23	410	432	410	432	0.98
5	8	2.1e-06	0.00035	21.9	1.7	1	23	438	460	438	460	0.98
6	8	4.4e-07	7.4e-05	24.0	1.9	1	23	466	488	466	488	0.99
7	8	1.7e-05	0.0028	19.1	1.5	1	23	494	516	494	516	0.98
8	8	4.4e-05	0.0073	17.7	0.6	1	23	522	544	522	544	0.97

Sequence Information

Coding Sequence: ATGGCCCTAGAATCAAATGGTAACAACGTGGTCTGGTTGAACGCAACCCGTCCTGATCAAATACAGCAGCACGTAGTGAAAGAGGACCCGGTGCGAATCGAGGCTAGCGAGGACCCGAGTCACCTGCAGCAGACACAGCATCACCGATACCAGCGTAGTCTCATTAAGATACCGAATCAACAGAGTCAACAGGTCGATCAGCCAGTGAAGTGTTCCATGTTTACTCAAACGGAGCAAACTAATAGTTTTACACAAACTGAACAAAGTAACTCTGGTTACGCCGAGCAGCGCCAGCCTCAACAGCAGGCGACAATGTTCGATCCCCAGCAGATACAGCAGCAGCAGCCTGCTCAGGGCCAGCAATCCCAGCAGCAGGGGCAGCAAATGCAGTACGTAACTgagaaaaaagaggaaaagCCCCAGCAGCAGGCAACAACAGCCGAATTTCCCTTCTACTACAATGTCAATATGCTGCAGAAGGTACAAACAAATACAGTTAGCACTATTGGTGCAATAACAACAGATGACAAAGGCTGTTATCGTTTTGATGTACAACCTGTTGGTTATAATACACTGCTGAATCAAATGAGTCTGGCGGCAGCGACAAATGCTGCAACATTCAAGTGTGACATTTGTGGATTGGTGTTTGGACATTTAAGTCTTCTAAATCATCACAAGAGACTTCACAATTCTACACCGAGTAATCTACAACAACCCCAGCAGGTTGTCGTACAGGCACCGACGACTGTCACAGTTGCAACAACACCCGAGAGACCGTACACTTGTGATGCTTGTGGTGCTTGTTTTGCATTGCCTGGAGAATTGAAGAGTCACAAGACTAATATGCATCAGAAACCTAAAGTCCAAGTGTGCGAGGAGTGCGGAAGTGAAGATCCCTGTGAACATCATCCAACTAAAGTTAAGAAGGCCATCAAGCCGGGCCATCATCCTGTCAAACGAAGGGGCGTCACTAGTGTAACCAAGTGCCACAAATGCAACGGAACGGGAATCATTTTCATTGGTAAAGACGACGAAAAACTAGATTCTGGACTGAGTTCCCTAGCGAAGTGTAGCGGCTGCAAGGCAACAGGCCGCATCATCATAGGAAGCGGCAAGCAAAACCAGAACCAGCCGGAGAAGCCATTTCACTGTAACGTTTGCGATGGAACATTTTCACGCTACTCATCGCTCTGGTCACACAAGAGACTCCACTCTGGGGATAAACCGTTCAAGTGCGAAGTCTGTGGTTTGGCCTTTGCGAAGGCTGCTTACTTGAAGAACCACGGTCGCGTCCATACCGGGGAAAAACCGTTCAAGTGTAGCGTATGTGGTATGCAATTTTCGCAGAGTCCGCACTTGAAGAATCACGAGCGCATACACTCGGGCGAGCGTCCATATCAGTGCGAGGTTTGTGAGAAAACATTCGCGAGACACTCGACACTGTGGAATCATCGTAGAATTCATACGGGTGAAAAGCCGTACAGGTGTAACACTTGTGGCTCGGCTTTCAATCAGGCGACTCACTTAAAGAATCATGCTAAAGTACATACTGGTGAAAAGCCGCACAGatgTGACATTTGTGAAATAGGATTTTCGGATCGTTTTGCCCTGAAACGTCACCGCGCCATTCACGAAAAGTATGGACAGACAGCGAGAAATCAAAATGCCAATAGTGCGAGTAATTCGCAACAGCCAAATGCGAGCAATccccagcaacagcagcagcagcctAACACGAGTAATCCCCAGCAGTCACAGCAGGCCCAACAGCAGGCCCAGCCACAGCAGCAGAGCCAGCCGGGTCAGCCTCAAGTTGTTGTTGTTAATGCAACGACACCGGTAACTGTCAGCCAGGGCCAGGGACAGGCAGTGATGCTGGACGAGGTATACAAATGCCAAGTTACTTTTCCAGAGCCTAAATGA
Protein Sequence: MALESNGNNVVWLNATRPDQIQQHVVKEDPVRIEASEDPSHLQQTQHHRYQRSLIKIPNQQSQQVDQPVKCSMFTQTEQTNSFTQTEQSNSGYAEQRQPQQQATMFDPQQIQQQQPAQGQQSQQQGQQMQYVTEKKEEKPQQQATTAEFPFYYNVNMLQKVQTNTVSTIGAITTDDKGCYRFDVQPVGYNTLLNQMSLAAATNAATFKCDICGLVFGHLSLLNHHKRLHNSTPSNLQQPQQVVVQAPTTVTVATTPERPYTCDACGACFALPGELKSHKTNMHQKPKVQVCEECGSEDPCEHHPTKVKKAIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKDDEKLDSGLSSLAKCSGCKATGRIIIGSGKQNQNQPEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCEVCGLAFAKAAYLKNHGRVHTGEKPFKCSVCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNTCGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTARNQNANSASNSQQPNASNPQQQQQQPNTSNPQQSQQAQQQAQPQQQSQPGQPQVVVVNATTPVTVSQGQGQAVMLDEVYKCQVTFPEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01514338;
90% Identity: iTF_00728842; iTF_00438977; iTF_00168739; iTF_00046469; iTF_01274013; iTF_00438304; iTF_00047487; iTF_00048180; iTF_00351392;
80% Identity: -