Basic Information

Insect: Psyttalia concolor
Gene Symbol: -
Assembly: GCA_030522845.1
Location: JAPYZM010012084.1:932-3170[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.13 22 6.8 0.2 2 23 173 194 172 194 0.97

2 11 0.0041 0.68 11.5 2.0 2 23 199 220 198 220 0.95

3 11 5.3e-05 0.0089 17.5 0.9 2 23 237 258 236 258 0.96

4 11 3e-05 0.005 18.3 0.2 1 23 330 352 330 352 0.99

5 11 2.6e-06 0.00044 21.6 0.7 1 23 358 380 358 380 0.97

6 11 0.00013 0.021 16.3 0.9 1 23 386 408 386 408 0.97

7 11 6.6e-06 0.0011 20.3 4.1 1 23 414 436 414 436 0.98

8 11 7.2e-08 1.2e-05 26.5 0.7 1 23 441 463 441 463 0.97

9 11 0.0011 0.18 13.4 0.2 1 23 469 491 469 491 0.96

10 11 4.7e-05 0.0079 17.6 1.5 1 23 497 519 497 519 0.95

11 11 1.8e-05 0.003 19.0 1.1 3 23 527 547 525 547 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.13	22	6.8	0.2	2	23	173	194	172	194	0.97
2	11	0.0041	0.68	11.5	2.0	2	23	199	220	198	220	0.95
3	11	5.3e-05	0.0089	17.5	0.9	2	23	237	258	236	258	0.96
4	11	3e-05	0.005	18.3	0.2	1	23	330	352	330	352	0.99
5	11	2.6e-06	0.00044	21.6	0.7	1	23	358	380	358	380	0.97
6	11	0.00013	0.021	16.3	0.9	1	23	386	408	386	408	0.97
7	11	6.6e-06	0.0011	20.3	4.1	1	23	414	436	414	436	0.98
8	11	7.2e-08	1.2e-05	26.5	0.7	1	23	441	463	441	463	0.97
9	11	0.0011	0.18	13.4	0.2	1	23	469	491	469	491	0.96
10	11	4.7e-05	0.0079	17.6	1.5	1	23	497	519	497	519	0.95
11	11	1.8e-05	0.003	19.0	1.1	3	23	527	547	525	547	0.97

Sequence Information

Coding Sequence: atgaaaaatgaaaattatcagaCCATGTCAGCGGACAGTACAATGGAAGAAAACTTTGTGAGTGTAGTCCTGAAAGAAGATCCGGACCGGCTTCTCCCGACTGCCCACTACATCGAAGACATTTGCTCCTCGAGCTTCGAGAAGGTGTTCCTGCCAATCGAGACCCAGGAAGTCGATTTCCCCGATGAAATGGTGAAACTAAATTTAGAGGGTCAAACTCCCCACCACGAGTGGGTCTCCCAGATTGCCAGCACGAGTACCACCTTCAGACTACCCATGAGCTACGAAGTAACTCTAAAAGCCAAAGAAGAAACAGCAGAGGAAGATGGAGAGCGAAGGCGAGAAGGCGAAGTACCAGCCCAGCAACTCCAAAAACAAGAAGTGCCGAAGAAAAGTGAGCCTCGCCGTAAACCCTCAAAAAAAGTGCGAATAACAGTGCCAGCTACAAACATAGAAGAGGCTCTGAGCCACGAGGGCTACCCCAGCATATCGCAGACCTCGAAATTCTGCAAAATCCAGTGCTCACTCTGCAGCAAATGGTTCCTAAACAATGAATCAATGATAGCCCACCTGCGCTCCCACTCCTCCTCCCTCCGCTGTCAAATTTGCCAAGAGATATTCTCAGACGATCACACTCTCCACTCCCACCTGCTTGAGCACATGGAGCCAAAAATCCCTACCTCATCCATCTCATCAAAGTCAGCCCTGGAATGTGGAATTTGTAGCCGAGTTTTCCCCTACAAAAGCTGTCTTCGAAATCACTTGCAAGCACACGTCACCCAGTCGTTCACCAGTTCCTGTTCTTGCAATCATCACTACAATCTCCAAGAGCGCATCGACAACACCTCTTCCCCGTTGAAGGCCCCTTGTGACCTCTGCGAGCGATACTGCAGCGAAGAAGCTTCAGTGGAGTGCAAAAAATTGGACTTcagagagaagaaaaatcacgtgaaaaataaatcccaGGCAGGGGGGAAAGTCAAGCCATTCCGTTGTGCACTCTGTCCCTTGTCGTTTGCCCAGAGGACGCCACTGAAGAACCACATAATGACTCACAGCGAGGAGAGACCCTTCGCCTGCCGCGTATGCGAGAAAACTTACAAAAGAAATTCAGAATTAATCAGACATACCATGGTACACACTGGAGAAAGACCTTATGAATGTAAAGAGTGTCTCATGACATTCAgggagaaaacaaaattaaattcccatatGGTGGTGCACACAGGTGAGAAGCCCTTCGAGTGTCATATCTGTCATAAGTTCTTGGCGAGGAAGTCAGACTTGACCAGCCATATGTTGTCTCACACTGGTGGTCAGTACGACTGCAAAATTTGTGAGAAGATATTCACCAGGAAGTCTGATCTCAATCGACACTTGCTAGTCCACACTGGGGAGAAACCATTTGCCTGTGATTTCTGTGATATGGCGTTCAGGGAGAAGACGAGGCTCAATGCTCACCTGGTGATGCATACTGGGGATAAGAGGCATGCTTGTAGGATATGCGAGAAGAGGTTTAAGGATAAGTTGGGGCTGAAGAAGCACATGATTGGGCATGCTGGGGACAGGCCTTATGGATGCTTTGTTTGTAAGAAGAGTTTCAAGATGAAGAGCACTTTGGTTAGTCATATGCAAGTGCACGAAGCCGAGGGTGATGAGGAGGCCAGGAAGGGTGAGGAGAGTTTTGAGGAGCGGGGAGCCCTGGGGAAGCATCTGCACGAGCTCGTGGAGAAGAaggagagaaagagaattAAGAGTGAAGGGGAGGAGGCTATGGAAAAAAAGGGTCCGTGA
Protein Sequence: MKNENYQTMSADSTMEENFVSVVLKEDPDRLLPTAHYIEDICSSSFEKVFLPIETQEVDFPDEMVKLNLEGQTPHHEWVSQIASTSTTFRLPMSYEVTLKAKEETAEEDGERRREGEVPAQQLQKQEVPKKSEPRRKPSKKVRITVPATNIEEALSHEGYPSISQTSKFCKIQCSLCSKWFLNNESMIAHLRSHSSSLRCQICQEIFSDDHTLHSHLLEHMEPKIPTSSISSKSALECGICSRVFPYKSCLRNHLQAHVTQSFTSSCSCNHHYNLQERIDNTSSPLKAPCDLCERYCSEEASVECKKLDFREKKNHVKNKSQAGGKVKPFRCALCPLSFAQRTPLKNHIMTHSEERPFACRVCEKTYKRNSELIRHTMVHTGERPYECKECLMTFREKTKLNSHMVVHTGEKPFECHICHKFLARKSDLTSHMLSHTGGQYDCKICEKIFTRKSDLNRHLLVHTGEKPFACDFCDMAFREKTRLNAHLVMHTGDKRHACRICEKRFKDKLGLKKHMIGHAGDRPYGCFVCKKSFKMKSTLVSHMQVHEAEGDEEARKGEESFEERGALGKHLHELVEKKERKRIKSEGEEAMEKKGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00438259;
90% Identity: iTF_01273972;
80% Identity: -