Pcon004221.1
Basic Information
- Insect
- Psyttalia concolor
- Gene Symbol
- ECU06_1150_1
- Assembly
- GCA_030522845.1
- Location
- JAPYZM010000892.1:3428-10664[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.46 77 5.1 6.3 1 23 266 289 266 289 0.94 2 14 7.8e-05 0.013 17.0 2.3 1 23 320 342 320 342 0.98 3 14 2.6e-05 0.0044 18.4 1.4 1 23 348 371 348 371 0.96 4 14 7.1e-06 0.0012 20.2 0.3 1 23 377 399 377 399 0.98 5 14 2.2e-07 3.7e-05 25.0 1.1 1 23 405 427 405 427 0.98 6 14 0.00033 0.056 15.0 1.7 1 23 433 455 433 455 0.97 7 14 5.7e-05 0.0096 17.4 2.7 3 23 463 483 461 483 0.95 8 14 6.3e-05 0.011 17.2 1.2 2 23 490 511 489 511 0.96 9 14 0.00088 0.15 13.6 3.7 1 23 628 651 628 651 0.96 10 14 0.00011 0.019 16.5 2.0 1 23 657 679 657 679 0.96 11 14 2.4e-06 0.0004 21.7 0.5 1 23 685 707 685 707 0.98 12 14 0.0076 1.3 10.7 3.2 1 23 713 735 713 735 0.97 13 14 1.1e-06 0.00019 22.8 1.1 1 23 741 763 741 763 0.98 14 14 0.00028 0.047 15.2 1.7 1 23 769 792 769 792 0.95
Sequence Information
- Coding Sequence
- ATGGAGAGGAAAAACGTTGAAATATTGAGACATTGTGTACTACGTAAGAATAGTGAAGTAAATAAGTTTTTGGCTGAAAATGAGGGAAATAATCATGAATGTATAATCGATACTAGTGCTAATTCTGATGGAAATGGGCCCCTTTGTAGGATCTGTGCTAATACCAATAGTCATTTAGTATCTATTTTTGAGGGGGAAGGATCTCAACTTGACTTAATTACGAAGATTCACAAGTACTTACCTATTCAAGTGACAGAAAATGATGGCTTACCCAGGCAATTGTGTTATGAGTGCACAGTTACAATTATTGCTTTCCATGATATTGCGGAAGGGTGTTTGGAGGCCGAGCAGAAGCTCATCCAGCTGCAAGAGGgcaagagtaaaaaaaattcagagGAACAACAGGCAGTTGTTGCAGTTGAAAAAGATGAGAAAAGCAAAAAACGTGAAGTATTTGAAGCAGAGGTTCAAGAGAAGCagATCGCCATTGGAGTACTAAACGAGAAGGATGGAGAAATCTCTCAGGAGACAGCCTCGTTGAAGGAGGAAACAGAAAGATCCCTCGCGAAGAGGCCGGCGACTAGTCAGAGAGTATCGAGAAGAACAAATAGCTCAAGAATCCTAACAACAAAGACCACGGCCACTCAAGCCTGTTCAATAATTGAGGATGATTTCCTGACGGAGGAAGAGAATGACACTCAGAGCACCTCCGAATCTCGGCTAACCCGAGAACTCCCTCTAAACACCCGAAAAACTTCCGAAAGGCCCTTCCGAGCCTCTCGAAAAGCAGACAAATTCTTCTGTTTGCACTGCAACTTCTCCTCAAAGctaaaaaaatccctcaacATTCACATGTGCGACACGCACCCCGAGCTGTCTGCCATCGCCCAGAAACGCCCTGCCATCAATAAAGAGTGCTACGAGGCAGCGCGGATGGAGGTGGATGGAAAAGTCTATTACCACTGCAAAGATTGtggaaaaaatcttttttctcCATACACATTTTCTTGGCACATGAGAATTCACACTGGAGAGCGCCCTTTCACCTGTCACTTATGCGGAAAGCAATTTCGAGTGAATCAGGGATTGGCTAGACACTTGAACGAAACACACGCGAGAATAAAGAATTTTCCGTGTGACATCTGCAATCGAATGTTCGCGACAAAACGAAATGTTGAGGATCATCGGAGAATTCATACTGGCGAGCGGCCCTACATCTGTAATGTCTGTGGAAAGACGTTTAAGCAGAAGGCCTCATTATTTGTGCATAACAGAACTCACAGcgatatttttccattcaagTGTAATCATTGCGAGCAGGTCTTCCGGACTAGACCGGTACTTATGGTGCATGTCACCAAGCACACAGGGGAGAAGCCCCATTTATGTGATATTTGTGGGAGGGCTTTTAGGATCAAACATGAATTGAAGCGACATCGATTGATTCATTCTGACGAAAAACCGTGGAAGTGCACAGAGTGCGGATTAGGGTTTCGACAGAAACGGTATTTGGTCAATCATAAAAAGAACCACAATCATGCTAGCGGGAAAACCCACAAATCAAAAGTCGCCAGAAATGACATTGGTTTACCTCGAGGCACGGAGATTTCCAAACAGTTCCTGGATTCCTTCACACCCGAAACATCGGAATCAAATAAATGCAGCGTAGCAGTACCAGAGGCCCCCAAAGTCTTTTTGCAAGGCCTTCCCTCGTCTCCCAATAGAATTCCCCCCGAAGATACGTTCTcacataaaagaaaagaagaaatgattgTGCAAAACTCTAGAGTAAAACTACTACGGGAACAAAAAAGGAAACATCAAACGTCGAAGCTCGAGCAGAAACGATCGACTTGTCAAACTCGTGACGAACAAAAGTTATTCACTTGTCATGTGTGTGGAAAGCAGTTCGGTCAGACTGGAAGTTTGTACTATCATTTGAAGCACGTTCATGCTGGAGTGAAAGATCACGCTTGTGACATATGTGGCAGATGCTTTGCAATGAAAACGGCGATGCAGGATCACAGGAGGATTCACACTGGAGAACGTCCCTATGTCTGCGATACCTGTGGAAAAACATTCAAGACCAAAGCCGCGCTCTACATTCACTCGAAAATTCACTTAGACCAGTTTCCGTATAAATGCTCCTACTGTAACAAACTCTTCAAGTTTAAGCAGCAAATGCTGGGACACGAGACGACTCATACtggaattaaaaatcatacGTGTGATACTTGTGGTAAATCATTTGGAGTCAAGTGGGATCTGACGAGACATTTGAGGATTCATTCCACCGAAAAGCCGTTTATCTGTGATCAGTGTGGAGTGAGCTTTGGACAAAAGAGATATCTGACTAGTCATAAACGATTTAAACATAGAAGTGAGTGA
- Protein Sequence
- MERKNVEILRHCVLRKNSEVNKFLAENEGNNHECIIDTSANSDGNGPLCRICANTNSHLVSIFEGEGSQLDLITKIHKYLPIQVTENDGLPRQLCYECTVTIIAFHDIAEGCLEAEQKLIQLQEGKSKKNSEEQQAVVAVEKDEKSKKREVFEAEVQEKQIAIGVLNEKDGEISQETASLKEETERSLAKRPATSQRVSRRTNSSRILTTKTTATQACSIIEDDFLTEEENDTQSTSESRLTRELPLNTRKTSERPFRASRKADKFFCLHCNFSSKLKKSLNIHMCDTHPELSAIAQKRPAINKECYEAARMEVDGKVYYHCKDCGKNLFSPYTFSWHMRIHTGERPFTCHLCGKQFRVNQGLARHLNETHARIKNFPCDICNRMFATKRNVEDHRRIHTGERPYICNVCGKTFKQKASLFVHNRTHSDIFPFKCNHCEQVFRTRPVLMVHVTKHTGEKPHLCDICGRAFRIKHELKRHRLIHSDEKPWKCTECGLGFRQKRYLVNHKKNHNHASGKTHKSKVARNDIGLPRGTEISKQFLDSFTPETSESNKCSVAVPEAPKVFLQGLPSSPNRIPPEDTFSHKRKEEMIVQNSRVKLLREQKRKHQTSKLEQKRSTCQTRDEQKLFTCHVCGKQFGQTGSLYYHLKHVHAGVKDHACDICGRCFAMKTAMQDHRRIHTGERPYVCDTCGKTFKTKAALYIHSKIHLDQFPYKCSYCNKLFKFKQQMLGHETTHTGIKNHTCDTCGKSFGVKWDLTRHLRIHSTEKPFICDQCGVSFGQKRYLTSHKRFKHRSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -