Pcon007655.1
Basic Information
- Insect
- Psyttalia concolor
- Gene Symbol
- -
- Assembly
- GCA_030522845.1
- Location
- JAPYZM010002353.1:14592-20135[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0074 1.2 10.7 1.2 1 23 19 41 19 41 0.88 2 20 0.13 22 6.8 1.1 1 13 45 57 45 60 0.85 3 20 1.1e-05 0.0019 19.6 1.8 1 23 73 95 73 95 0.98 4 20 0.00042 0.071 14.6 0.9 1 23 101 123 101 123 0.98 5 20 0.0009 0.15 13.6 2.5 1 23 420 443 420 443 0.96 6 20 0.0061 1 11.0 6.8 1 23 450 473 450 473 0.97 7 20 4.3e-05 0.0071 17.8 3.9 1 23 478 500 478 500 0.97 8 20 0.0041 0.68 11.5 0.9 2 23 506 528 505 528 0.96 9 20 0.0036 0.6 11.7 0.9 1 23 533 557 533 557 0.97 10 20 6.8e-05 0.011 17.1 0.5 1 23 565 589 565 589 0.91 11 20 0.11 19 7.0 3.1 1 23 598 620 598 620 0.96 12 20 0.014 2.4 9.8 4.8 2 23 723 744 722 744 0.97 13 20 0.61 1e+02 4.7 4.4 1 20 753 772 753 776 0.93 14 20 0.014 2.3 9.9 2.6 1 23 787 810 787 810 0.96 15 20 7.4e-06 0.0012 20.2 1.3 1 23 816 839 816 839 0.95 16 20 0.023 3.9 9.2 0.8 3 23 846 867 844 867 0.94 17 20 0.00085 0.14 13.7 0.4 1 23 872 895 872 895 0.97 18 20 2.9e-08 4.9e-06 27.7 0.4 2 23 902 923 901 923 0.97 19 20 1.9e-06 0.00031 22.0 1.3 1 23 929 951 929 951 0.98 20 20 1.2e-06 0.00021 22.6 0.2 1 23 957 979 957 979 0.98
Sequence Information
- Coding Sequence
- ATGAGTTCTCTCTACTTTTACAAGCACTACAAACACAAGACCGAACACAAAGAATTTGAGTGTAATGTCTGCAAGAAACGGTTCAAGAGTCAGAAGATTCTGGGCAGTCACACTGAGCTCCATAGGAGGACCTTTGTGTGTGAGCACTGTGGCATGAGTTTCAACGGCAAGTGTGGACTGCCAAAATACCTGAAGACTCATACCAATGACAAACTGTATCGCTGCACTGTTTGCAATAAGAGTTTCAGCAACTTGAGTTCTCAGAAGATTCATCTGCTAAGGCATGTTGGGGAGAGACCGTACGTATGTGATGCCTGTGGAAAAAGATTCACTCAACGTACACCAATGATGCTGCACAAGAGAAAACATCCTAGGGCACACCCTCCTCTGCCTCCTATGAAAATTTCAGGTCTTCTTGGCAATATATCAGGTGCTACAGTAAATAGAGATGGGACACACATGGAGATAGACTCAGAagaatttaaagaaaattttgaacCTGTTGTCAATTCTTCAGAAAAATCTACGAGTGATAAACAAAGAATCGAAGAATTCATTGGAAGAGAAAATATGAATCCAGTAGTGCTACTCAGTGACATTTTCGTATCTTGGGATCAGGATGAAGAATTGACGACTCTGGATGAGTTGCCTCTGTCGAAACGAAAAGTTTTGGGAGCGTTTcccaaaaatgttgaaattaaACGTCAAGGAATCCATATGTCTATCAAATCTCTAGCACATCCCCTGAAATTCACATCAGAAATTGAGAAGATCGTGGAAGCTTCCGAGAGCATGGTATTTCAAGACGTTGCTACGAAACAAGCATCAAATACTCGGGATCTGAACattcaaaaattgttaaagaggagaaaaaaccCGAAACTAGACCCGAAAACTTCAGTAGTTACCTCAAAAAGATCAAAACAAATTGCTTCATCTGAAAGAAACTATGCCCAAACCGCTTCCGAATTTCAGCAACCAGACTCACAAATCCCTCTAGCTCCTCCCGTGATGCTTCCGTTACCTTCAACAAGTAAAACCTCCTTCAGAAAACGAAGAAATTGGACGGAAAAAACATCCCTCAACGATATCATCCTCCAAGATCATGAGAGCGTAATGCCCGAAGATTTGGACGTCAAAGCGACCTCTTCTGAGGAGGAGTGGGCCCCAGGCACACCGTTTTCTCTCCAGAAGATCCCAAAGGTCCATAGACAATCCCAGATAATTCCAAAACCAAAGAGAAAGTCTCTCAAGGACTTTCAGTGCGACGACTGCAAGCAAGTCCTGTGTTCCAAGCAATCCCTCATGAATCACATCGACCGCAAGCATCTAAAGAACTTCTTGATTTACTACTGCCTCTACTGTGACTTCAAAACTACTCACAACAGCTCCTTATGCACTCACATGGCGAGAAAACACGGCAATCAGTCCTATGAGTGCGACTACTGCCAGAAAACATTTTGTTCAAAACATGACATGAGGGTCCACATTGGTATTCACACGTGTAGTCCTCAGACCTGCCCAGTCTGCGGCAGTATTTCCAAAAACGAAGCAACCCTCAAAAAGCACATCCACAAAATGCACACGCAGAAATTTTTCGAGTGCGACGTAAAGGGGTGCAATAAGTCATTCATCTCTGAAGTTAGGTTCAATAATCACAAGATGAAGCATTCCGACACATTTGAGTGCAATTTTTCCTGCGAAGAGTGCAATAAGAAATTCCCGACAAATCAAATGTTGAATTATCATTTGGAAACTATTGATCATCTCAAGAGACAAATATCAGCACTTCACTTCTGCCCCAAATGTCGGATTAAATTCCCCTTGGAGACGATGATgaggcgccacaagagatTGCACTTGGCGACTATTAATAAAAAGAGAAACCCTCTAATTGTGAATAATCTCACGCGACCCAGAGTCCATAAAAACATCTCTGCAAAATCCCGCAAACTTCGAAAGAAGGGGATCTCTAAGGGCCCAGCCTTGTCCCTCAAACGAGAAACCTCAGAAGTGATGGATGAAGAAGCTCTAGAGGAGGACCTCCTTGAGGAGATCGAGTCCTCCCTTTCCCGGGAGCCCCCGATCGATCGACCCCCTTCAAAACCCAGCATGGAAATTTACAGAGTCACTCTCCGCCCCAAGAAATCAAACCCCTCTGCCTTAAAATGTGATATGTGTAGTTACTCGTGTTCAAAACGAAACACTCTCTACGCGCATAAACGAAAGCACAACCTGGGGGTACAACCAGAAGTATTTTGCTGTAGTGAGTGTTCATTCAAGACGACGAGAAAGGCATCCCTCTACTCCCACCTCTGGAAGAAGCATAAGGACCCGAAGGAGAAGGAACCCGAGCTCTTCTCTTGCAGTCAATGCGATTACAAAAATAAGAATAAGTACGAGTTAAAGGTGCACATAACGAGGAAACACACTGACGACTACAAATTCTCGTGCGAAACGTGTGGAAAGAAGTTCAAAGTGAAGGGGGATTTGACAAATCACGTCAGATTCAATCATAAAGAGCAACCGGTGATCTGCGACGTCTGCGGAAAGACGTGTCTCAACAGTAATTCTCTCTACGTGCACCAGAAGTTCGCACATTACAAAGCTAAATATGAGTGCACAATTTGCAAGAGACGAATGGTAACACAGGAAAATCTCGACGAGCACATGTTGCGACAGCACGAGAAGAGGGAGAATGTCGTATGCGAGGAGTGTGGAAAGTCGTTCTCGCGAAATAGTAGACTCAAAGTCCATATGAGAATTCATACTGGAGACAGACCGTACAGTTGTCATGTATGTAATAAAGCATTTGCGAGGAGAACTGCGTTGAAGCAACACCTGTTGATTCATACTGGTGTAAGACCGTACATTTGTGACATCTGTGGAAAGGCTTTCACACAGAAGCCGGGGCTTATCAGTCACAGGAAGTCACATCCTGGGACGCATCCACCTTTGCCCAGGGTTCTCATTGATCATATATTGAACGATGTTCTGAATAATTAA
- Protein Sequence
- MSSLYFYKHYKHKTEHKEFECNVCKKRFKSQKILGSHTELHRRTFVCEHCGMSFNGKCGLPKYLKTHTNDKLYRCTVCNKSFSNLSSQKIHLLRHVGERPYVCDACGKRFTQRTPMMLHKRKHPRAHPPLPPMKISGLLGNISGATVNRDGTHMEIDSEEFKENFEPVVNSSEKSTSDKQRIEEFIGRENMNPVVLLSDIFVSWDQDEELTTLDELPLSKRKVLGAFPKNVEIKRQGIHMSIKSLAHPLKFTSEIEKIVEASESMVFQDVATKQASNTRDLNIQKLLKRRKNPKLDPKTSVVTSKRSKQIASSERNYAQTASEFQQPDSQIPLAPPVMLPLPSTSKTSFRKRRNWTEKTSLNDIILQDHESVMPEDLDVKATSSEEEWAPGTPFSLQKIPKVHRQSQIIPKPKRKSLKDFQCDDCKQVLCSKQSLMNHIDRKHLKNFLIYYCLYCDFKTTHNSSLCTHMARKHGNQSYECDYCQKTFCSKHDMRVHIGIHTCSPQTCPVCGSISKNEATLKKHIHKMHTQKFFECDVKGCNKSFISEVRFNNHKMKHSDTFECNFSCEECNKKFPTNQMLNYHLETIDHLKRQISALHFCPKCRIKFPLETMMRRHKRLHLATINKKRNPLIVNNLTRPRVHKNISAKSRKLRKKGISKGPALSLKRETSEVMDEEALEEDLLEEIESSLSREPPIDRPPSKPSMEIYRVTLRPKKSNPSALKCDMCSYSCSKRNTLYAHKRKHNLGVQPEVFCCSECSFKTTRKASLYSHLWKKHKDPKEKEPELFSCSQCDYKNKNKYELKVHITRKHTDDYKFSCETCGKKFKVKGDLTNHVRFNHKEQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECTICKRRMVTQENLDEHMLRQHEKRENVVCEECGKSFSRNSRLKVHMRIHTGDRPYSCHVCNKAFARRTALKQHLLIHTGVRPYICDICGKAFTQKPGLISHRKSHPGTHPPLPRVLIDHILNDVLNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -