Pcon027397.1
Basic Information
- Insect
- Psyttalia concolor
- Gene Symbol
- -
- Assembly
- GCA_030522845.1
- Location
- JAPYZM010035045.1:202-1045[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-10 1.1e-06 29.2 0.2 4 38 18 51 15 56 0.89 2 2 6.8 1.6e+04 -3.3 0.0 14 21 135 142 134 142 0.84
Sequence Information
- Coding Sequence
- ATGGTGCgatattataaaataaaaagtgaTCGACAATCGTGGAGTGAGATATCAATGGCTCACGCAATTGAAGCGGTTCGGAAAGGTGAGAAACTTAGCACTGCGGCTAAAAGCTACAACGTTCCCAGAACAACACTACGTCGGTTTGTGGCGACTTACACACAATATTTCGACATGAAAATGGCACTGACTAAAgATTTGGGGAGGTACGAGACTATATTCAACCCTGTTCAGGAGACCGAGTTAGCAGCTTATTTGAAGAAACAGGAAGTTCGACTCTGCGGATTGACAAGTCTCCTAGTGAGAGTTCTGGTTTGGCACATGGCTGAAAGGAATGGCATCGTCCACCCATTCAAAAATGGAGCTGCTGGAGTAGACTGGATGAGAGGATTTTTCAAGCGGGTAGGATCACTATCATTACGGAAACCTGAAGCAGTATCTGCAGCCCGAGCCATGggattcaataaaattgttactcaaaatttttatgatcATCTCGAACGAGTGTTGAGAATGGCAGATATTATCGGAGTACCCGGTGAAACAGAAAGGTATCCATCTGATCGAATATTTAATGTTGATGAGACTGGCTGCAGCGTCAATCCGAAGTCTTTGTCAAGAATTGTGGCAGAAAAAGGCCAGAAACAAGTAGCGAAAAGAGTGACGAGTGAGAGAGGACGAACAATaacgataagatga
- Protein Sequence
- MVRYYKIKSDRQSWSEISMAHAIEAVRKGEKLSTAAKSYNVPRTTLRRFVATYTQYFDMKMALTKDLGRYETIFNPVQETELAAYLKKQEVRLCGLTSLLVRVLVWHMAERNGIVHPFKNGAAGVDWMRGFFKRVGSLSLRKPEAVSAARAMGFNKIVTQNFYDHLERVLRMADIIGVPGETERYPSDRIFNVDETGCSVNPKSLSRIVAEKGQKQVAKRVTSERGRTITIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -