Pcon008196.1
Basic Information
- Insect
- Psyttalia concolor
- Gene Symbol
- ttk
- Assembly
- GCA_030522845.1
- Location
- JAPYZM010002654.1:8554-11452[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.006 14 6.5 0.0 19 40 210 232 196 236 0.71 2 4 1.7e-11 4.1e-08 33.9 0.0 5 39 247 280 244 284 0.92 3 4 0.028 67 4.4 0.0 23 34 316 327 301 332 0.86 4 4 2.9e-12 6.9e-09 36.3 0.1 4 38 358 392 356 397 0.91
Sequence Information
- Coding Sequence
- ATGTCAGAACAAACTGGTAAACCTCAAAGTGATCAGAGCTATTGCTTCAAATGGGAGAATTATCAAAATCATTTGTCAACGGTAGTGGGACAATTGCTGGAGGACAACTCCATGGTAGACGTTACGCTGGCTGTTGCTGGAGAGCGCATCCATGCACATCGCATTGTATTATGCGCCTGCAGTACTCTATTCCAAGAAATTTTGAGCGAAACGACGGAGGATCATCCTACCGTTATCATCAGTGACATATCGGCAGCTGATGTCCGGTCTATTGTGGAGTTTTCGTATCAGGGAGAAGTTAGAATACCTGTCGACAATATAAATAACTTGTTGGACGCTGCACAGCTGTTGAGAATAAGTGGATTGAtggagATCGAAGGTCTTGACGAGCATGATACAGCCAACAGTAAGGTTGTGACCGAAGAAGTAGATCAAGAAATTCCATCGGATCGTGAGGGGAGGGTGACAGGGAACGCTGTTGAAACACAAACGGACGACGATGCGGGTGTCGACGAGGAAGAgtcaggtgaaaaaaaaaaggacaaaaaaAGGAGAGACCCCTTAAGGAAGGAGTACAATGATGTCATGCTGGATACAGCTATAAATGACTTGAAGGAGGGAAAAACGTTGATTGAGGCCTCCGTTAAGAATCATATACCGAGATCAACGCTTTACATGAAAGCCAAGGCCCTCGGCATTCAGTTGCATGCAGCGCGAAATGAATATCCAGCTGAGTGTATGCAGTCTGCTATAGACACAGTTCTCGGTGGTGCAAGTCTACAGCAAGCAGCCGAAATGTATGGAATACCGAAAACTGTTCTTTGGAGGCGAATACAAAAAGAAGGATTCCAAATAACCAGAGCAGAGACGAAGAGGCAGTATGCCTCTGAGAAACGACTCGCTGCTGTTAAAGCGCTTGAGAGAGGAGAAAGACTTACAAAAGTCTCGATGGAATTTAATATACCCAAAACGACCTTATTTCGTGATAAAGTTAAACTAGTAGACGAAGGAAAATTACCAGAATCATTTTGGAAGAGACGACAAACTGACGACGATGGCTTGAAAAAGAGTAGACTTGAAAAGGCGGTGGCTGCCTGCAAAGACGGTAGAATGTCGCAAGCGGCAGCTGCTACACTCTATGGCATACCGAAGACTACGATTTGGAGGAAATTGCAGCAAACCAGTAAGAATACTGACGACAACACAAGCCCACCAGTTtcaaagagaagaaaaaaagattgtCTTCAAATTAAGAATGAAAATGCTGGTGATGACTTTGCTCTGTGTGAAGTCGCTTCGGAGATACCCATAACCTACATCGATGAAGACAACATTCCCCAAAACTCAGTAATAATATTAGCAACAGAAGATGTCGACGACCTCAATTTAGAGGACAATCGTTCAATAATTGTCAATGCAGATTCTGGCCAAGAGTATATCCCTTGTTCAATAAGGATCGACGAGAGTACAAACTACAATCCAGAAGAGAGTTAG
- Protein Sequence
- MSEQTGKPQSDQSYCFKWENYQNHLSTVVGQLLEDNSMVDVTLAVAGERIHAHRIVLCACSTLFQEILSETTEDHPTVIISDISAADVRSIVEFSYQGEVRIPVDNINNLLDAAQLLRISGLMEIEGLDEHDTANSKVVTEEVDQEIPSDREGRVTGNAVETQTDDDAGVDEEESGEKKKDKKRRDPLRKEYNDVMLDTAINDLKEGKTLIEASVKNHIPRSTLYMKAKALGIQLHAARNEYPAECMQSAIDTVLGGASLQQAAEMYGIPKTVLWRRIQKEGFQITRAETKRQYASEKRLAAVKALERGERLTKVSMEFNIPKTTLFRDKVKLVDEGKLPESFWKRRQTDDDGLKKSRLEKAVAACKDGRMSQAAAATLYGIPKTTIWRKLQQTSKNTDDNTSPPVSKRRKKDCLQIKNENAGDDFALCEVASEIPITYIDEDNIPQNSVIILATEDVDDLNLEDNRSIIVNADSGQEYIPCSIRIDESTNYNPEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00438200;
- 90% Identity
- iTF_01273890;
- 80% Identity
- iTF_01273196;