Basic Information

Insect: Psococerastis gibbosa
Gene Symbol: -
Assembly: GCA_963971405.1
Location: OZ020488.1:19917494-19922475[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.7 3.1e+02 2.6 0.1 2 9 163 170 162 174 0.88

2 18 0.13 8.8 7.5 0.3 1 20 250 269 250 271 0.91

3 18 0.018 1.2 10.2 0.4 1 23 282 304 282 304 0.96

4 18 2.1 1.4e+02 3.7 0.0 2 23 318 339 317 339 0.94

5 18 0.0019 0.13 13.3 2.8 1 23 349 371 349 371 0.98

6 18 0.0048 0.32 12.0 0.9 2 23 440 462 439 462 0.90

7 18 0.044 2.9 9.0 0.0 3 23 471 491 469 491 0.95

8 18 8.8e-05 0.0058 17.5 0.6 2 23 535 557 534 557 0.96

9 18 0.085 5.6 8.1 6.1 1 23 563 585 563 585 0.97

10 18 0.28 18 6.5 4.2 3 23 623 643 622 643 0.97

11 18 0.0003 0.02 15.8 2.4 1 23 667 690 667 690 0.96

12 18 1.2 79 4.5 1.8 1 23 712 735 712 735 0.94

13 18 0.022 1.5 10.0 0.3 2 23 759 780 758 780 0.95

14 18 0.0097 0.64 11.1 3.6 1 19 792 810 792 812 0.96

15 18 4.3 2.9e+02 2.7 1.7 1 21 822 842 822 843 0.91

16 18 0.36 24 6.1 0.1 3 23 887 908 886 908 0.97

17 18 2.5 1.6e+02 3.5 1.6 1 23 957 979 957 979 0.86

18 18 0.06 4 8.6 0.4 1 23 994 1016 994 1016 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.7	3.1e+02	2.6	0.1	2	9	163	170	162	174	0.88
2	18	0.13	8.8	7.5	0.3	1	20	250	269	250	271	0.91
3	18	0.018	1.2	10.2	0.4	1	23	282	304	282	304	0.96
4	18	2.1	1.4e+02	3.7	0.0	2	23	318	339	317	339	0.94
5	18	0.0019	0.13	13.3	2.8	1	23	349	371	349	371	0.98
6	18	0.0048	0.32	12.0	0.9	2	23	440	462	439	462	0.90
7	18	0.044	2.9	9.0	0.0	3	23	471	491	469	491	0.95
8	18	8.8e-05	0.0058	17.5	0.6	2	23	535	557	534	557	0.96
9	18	0.085	5.6	8.1	6.1	1	23	563	585	563	585	0.97
10	18	0.28	18	6.5	4.2	3	23	623	643	622	643	0.97
11	18	0.0003	0.02	15.8	2.4	1	23	667	690	667	690	0.96
12	18	1.2	79	4.5	1.8	1	23	712	735	712	735	0.94
13	18	0.022	1.5	10.0	0.3	2	23	759	780	758	780	0.95
14	18	0.0097	0.64	11.1	3.6	1	19	792	810	792	812	0.96
15	18	4.3	2.9e+02	2.7	1.7	1	21	822	842	822	843	0.91
16	18	0.36	24	6.1	0.1	3	23	887	908	886	908	0.97
17	18	2.5	1.6e+02	3.5	1.6	1	23	957	979	957	979	0.86
18	18	0.06	4	8.6	0.4	1	23	994	1016	994	1016	0.94

Sequence Information

Coding Sequence: ATGGTAAAGAGCATTATATACCGTGGAGATCCAATGCCTCAAAAGCTGTGCTTGTCATGCTGGGAAAAGTTAGAATCGTGGTCGTCCTTCAGAGAAATGTGCTTTGACACTGACAGAAACTTGCGGAAGAGGCTGAAGCCTTTCATTAAGGTTGACTTTGTCGAAGAATACTTGACGAAGTGTTCAACTTTCTCTAGTTATGAATCGGAGCAGAATCGCAGCAGCAGTCTCGAGCCAGATCTAGTTGGAATGCACTTACTGGATGATCGATCGCAGACCACTGAAGATGATTCTTCTGACGCTCGTGCGATTTCTGCTGCGGACAGTACCAACTGCTTTGATCGCACCATCAAAATAGAGGCGGAGTCGAGCGACGAAGTATGGGCAGGAGAGGGATTGATAGCGAATGTCGCAGGGGGAGCTTCTGGAGTCTTCAATTGCTCTGCTGCTGAAAATGTCCAGATAAAACAAGAATTGATCGGTGATGTATGCCCAATATGTCATAAAACGGTTCAACTAAGTGGGGATCATATTTGTGGAACAAATTATTCAGATATGACTGTCGTGGATGTTATCGTCGATGTAGATGCTGCTAATTCTGAGGGCATAGAAGAAAATAGTGCTGCCTATAATCTACGGTCCAAACAAGATGCCTCCAATGTAAGCTACGAAGAACTCGAAGACTGGGTGGAAGATGAGGCAGTGTCACAGCTATCGCCAAGGTTAGCAATGCAGAAAATCACCCCTTTCAAGTGTACtgaatgtaatatttattttgaatcCAAACTGGCATTACTAGGTCACTATTCTTCTTCGGAATGTGCTAGCAGTGGGAGCGTGCGGTACTCATGTAAGACCTGCCAGCGAATTTACTTTTCGGAAGAAGACTTAGCAGAACATCAAGTCCAGCATTTAACTATTGCTTACAACTTGACAGTTGATGAGCTGGTTAGATGCTCTCAATGTAATTTGCTATTCGCTGATGATGCTACCGTGAAACAACATGCAGCTGTGCATGCCAATTCAGATCCACCTTCGCGTCGATACAACTGTGCTAAGTGCCAAACATCTTTCGTAGACCGGAGAAGCTACGATAAACACCGCAAGACTCATAATTCAGCAAGAACTCAATCAACAATGCCAACTAGGAGTCTACTACCACCACCACCTCAACTAACCAAGAGACCACTAGCTGCAACAGTACCAGCTAAAAAATCAGCAGCATCTACCGTACCAGCAAAGCGGCCTGCGCCATCAACACCATCCACCATACCACCAGCCACGAGACAATCACCATCCACTCCTATGCAGCCTCTGAAGTGTAATTTCTGCCCAAAGAAATTCTCCGATGAAGAACGCCTCATTGATCATAGATTTCTCTCTCACGGCCTGCCCGATGAACGCGTCAACTGTCAATCGTGTGACCTCAAGTTCCCCGACTTAAAAGCGTTGGCTGCTCATGCCTTGAGTCACAGACCTGGCCCTGTTGCCAGAAAAACGACCACTCAACCACCTGTAAGGAGGCTTTCGACACGCAAAGAACCGCCAGTACCCACCGTTACAATCGAAGATGTAGATGTTAAGGTTGAAACCAAGACTATCCGCTGCAGGCGTTGTGGACGCATTTTCAAAACGAAAGATGATTTGCTACAGCATGAGATGACAATTCATAAGAATTTATCTCCTCATTATTGTCGGAAATGCTCGAGGCGTTTTGTCACCAGATCTCAACTTTTGTTCCATTATCGTAGCCACTTCAAGGGACAGCCGTCGGTAGAGGCTGAACCGGAACCTGAGCCTGAGCCTGTTGAAGTCATAAATGACTGTGAAGACGAGGACAAGAAACTTGATAATCCACGACTGCTATGCTTGGTTTGTGACgttcaatttcatcatcaaCACGATTTGACCGTCCACGAAACCACTCACGGTCTCAGCCCAGGACGAAAGCACTTGACTAAGAATATTTTCAAAGCCGGTCAGTGTTTAGtttataaatatcagtgcaacAAGTGTCCCCAACTATTTTGCTCGCGGGGAAGCTTAAACAGACACCGGGATAGCGCACATGTAGGTGAGCAGATAGACTTTCTTCGGCTCAGAAGAGGCGTTATTGCTAAGAAAACGGAAGGATTTCCTTGTAGCCAGTGTAACGCAACTTTTCTTTCCAAATCAAAGCGAACGTTGCATTTTAGACAAGAACATCGAATCAATATATCCGACGAGAAATTGGAAATGGGAAATGAACAGAATGCTGTTGGCAATGGCTGTGTTCCTTGTCAGTTCTGTAACAAAATTTTCAACTATTCTTACATCGCCAGGCATATAAGACAAGAGCATAGAGTCATGGGCGAAGGCTCGAAAAGGGCAGGCTACCAATGTCGATTTTGCTCTAAAATTTGTAGCACTAGCTTCAACCTACAGAAACATGAGTCCTGTCACGATCCGGATAGAAAACACACATTTCTTTGTAAATTTTGTGGACAGGGTTCTGATAGCCATAGTGTGTACCAGAAGCACAAGAAGCAATGCGCGTACGTTGCCTCCAAGAGAACATCTCCTGTTGTGGTTGCCACTCCGCCCACACCTCCATCTTCGGCGCCACCTCGCCCCGTCCCACCAGAATCAATGGGAATGTCGTTCGATGAGTATAAGTTGTGTCGAATTTGTCTTAATTCTTATGAAACGACAAGTTTACTTGAACTTCATGTAATGACAGCACATGGGGTTGAAGCATTCCAAAGGCTAGAAATTTCGAAACCAAAGCAAATGGCTCCTGCAAATGAGCCTCGATTGGTTCAAAGTGAGCCGAGACAAGAGCTTTGGAATGAGGAGGCCAATAGCATAATCCGAAGGGTCGAGGGAGGGTTCCGCTGCACGTACTGTGACATTCATCTGAGCAACGTAATGTCCGCTATGTACCACCGCTCGCAACATCCGCATGGCAATCTTTATATCGTCCAAGTCGATGAAAATGTATTCCAATGCACTGTTTGCCCCCGTGTTTTAAGAACCCGGCATGAGGCCTTGTACCATGCTGAAGTGCACGCTGAACCGAAGGACGTGAAACCGCCACCATTGCAAGGGCCACTTCGCAGTTTTAACTGCCCCTTTTGTAGCTCTACTTTCAACTGTGAAGATAGCATCCGTAGTCATATTTATTATGTACATCCTGAAGGAGTTGGAAACCCTCTATGA
Protein Sequence: MVKSIIYRGDPMPQKLCLSCWEKLESWSSFREMCFDTDRNLRKRLKPFIKVDFVEEYLTKCSTFSSYESEQNRSSSLEPDLVGMHLLDDRSQTTEDDSSDARAISAADSTNCFDRTIKIEAESSDEVWAGEGLIANVAGGASGVFNCSAAENVQIKQELIGDVCPICHKTVQLSGDHICGTNYSDMTVVDVIVDVDAANSEGIEENSAAYNLRSKQDASNVSYEELEDWVEDEAVSQLSPRLAMQKITPFKCTECNIYFESKLALLGHYSSSECASSGSVRYSCKTCQRIYFSEEDLAEHQVQHLTIAYNLTVDELVRCSQCNLLFADDATVKQHAAVHANSDPPSRRYNCAKCQTSFVDRRSYDKHRKTHNSARTQSTMPTRSLLPPPPQLTKRPLAATVPAKKSAASTVPAKRPAPSTPSTIPPATRQSPSTPMQPLKCNFCPKKFSDEERLIDHRFLSHGLPDERVNCQSCDLKFPDLKALAAHALSHRPGPVARKTTTQPPVRRLSTRKEPPVPTVTIEDVDVKVETKTIRCRRCGRIFKTKDDLLQHEMTIHKNLSPHYCRKCSRRFVTRSQLLFHYRSHFKGQPSVEAEPEPEPEPVEVINDCEDEDKKLDNPRLLCLVCDVQFHHQHDLTVHETTHGLSPGRKHLTKNIFKAGQCLVYKYQCNKCPQLFCSRGSLNRHRDSAHVGEQIDFLRLRRGVIAKKTEGFPCSQCNATFLSKSKRTLHFRQEHRINISDEKLEMGNEQNAVGNGCVPCQFCNKIFNYSYIARHIRQEHRVMGEGSKRAGYQCRFCSKICSTSFNLQKHESCHDPDRKHTFLCKFCGQGSDSHSVYQKHKKQCAYVASKRTSPVVVATPPTPPSSAPPRPVPPESMGMSFDEYKLCRICLNSYETTSLLELHVMTAHGVEAFQRLEISKPKQMAPANEPRLVQSEPRQELWNEEANSIIRRVEGGFRCTYCDIHLSNVMSAMYHRSQHPHGNLYIVQVDENVFQCTVCPRVLRTRHEALYHAEVHAEPKDVKPPPLQGPLRSFNCPFCSSTFNCEDSIRSHIYYVHPEGVGNPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -