Pgib014491.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020488.1:32967156-32968463[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.037 2.5 9.2 0.2 2 21 159 179 158 180 0.93 2 10 0.0002 0.013 16.4 2.7 1 23 183 206 183 206 0.94 3 10 1.1e-06 7.6e-05 23.4 2.1 1 23 210 232 210 232 0.99 4 10 0.0012 0.079 13.9 1.9 1 23 238 260 238 260 0.98 5 10 0.00058 0.039 14.9 4.2 2 23 267 288 266 288 0.96 6 10 0.00045 0.03 15.3 1.7 1 23 294 317 294 317 0.97 7 10 0.00011 0.0073 17.2 1.7 1 23 325 348 325 348 0.96 8 10 0.00017 0.012 16.6 1.8 1 23 354 376 354 376 0.98 9 10 0.00013 0.0087 16.9 1.2 1 23 382 404 382 404 0.97 10 10 0.0015 0.1 13.6 3.6 1 23 409 431 409 431 0.99
Sequence Information
- Coding Sequence
- aTGCCGTCTCGAAAGGGCAAGGGCAATGTAGAGAAGATAGTGGAGAGACTGAAAGCAACTAAAGGAAAAAAGATACTTAAGAAAAAATCCCGCTTTGGACGCCGCAGTCGTCGGAAGTCTGGAGAAAAGGAAAATGAACGGGAGGAAGAAATGGCCGTGAACGTAGAGGAGGAACATGTCATTGACGCAATCAAAAATGAACCGTTTTCATCGGATGATGAACTCCCCCTAACAGCACACATCCAATCTGATTTTTCAATGACTACGGTGACTTGGGAAGAAGACGCAGCAGATAGTGGACAGGAAGGTTCCAACACGAGACGaacaaagaaaaagaaatacatGGGTGTATCATCATTGAGAGAGAATTTAAAACAGTTTGGTGAAGAGATTTGCGAAAAATTGGAGGTGATTTTTGCTGAAATTCAAAACAATTCCAATAAACCATCGTCAAAATGTGATCGCGAAAAAACTGAGTGCCCTCTCTGTGGCgataaattttttgaaattttaagccACCTTGAACGTCATGTCAACCGCCCGTCTTTCAACTGCAGCTTGTGCAATAAATCGTTTACATTCAAGGGGAAACTGATGGACCACCGGAAATTCGTCCACGGCATCAGTTACACCTGCGAGATCTGCAATAAACGCTTCAATCATCGTGATAACATTCGTATCCACATGGCGACCCATGAAACTGAGGAAAAGTTTGTGTGCTACATATGTGGTTACCTTACAAAACGTCGACAGTGCTTAGCCGTGCACATGATGCGGCACGAAGACAAGTGGGTTTGCCACTGTAATATTTGCAATCGTGGCTTCTTTTCTTATGCGACGTTGGAGCAGCATATGAACAGCCACACGGGCGAGAAGCCGTTTACATGTGAGACTTGTGGAGTTAACTATTCCAACTACAACACTCTGTGGAAACATTCTCGAAAGTTCCATCCAGAACTATATCACAATATTTTTACATGCAAAGTCTGTGGTAAAGTCTTTATGAAGGAGAAATCCTATCATATTCATATGGCAAGCTTGCATTCGAAAGGTAACCATTTCGAGTGCGATTCTTGCAAAAAAACATTCAGTAAAGAACTGTCCTTGTTGATTCATAAACGCACACACACGAACGAGAGGCCTTACTGCTGTAAAATATGTGGTGGTGCGTTCACTGCTCGAAAATACTTGACCAAGCACATGGGAGTCCATAAAGCCAAGAACTACAAGTGTAGATTCTGCTACAAGAAGTTTATGCAAGAACAAGCGCTTACAAATCATGAGAGAAAGCACGAAGAGGTTAGATGA
- Protein Sequence
- MPSRKGKGNVEKIVERLKATKGKKILKKKSRFGRRSRRKSGEKENEREEEMAVNVEEEHVIDAIKNEPFSSDDELPLTAHIQSDFSMTTVTWEEDAADSGQEGSNTRRTKKKKYMGVSSLRENLKQFGEEICEKLEVIFAEIQNNSNKPSSKCDREKTECPLCGDKFFEILSHLERHVNRPSFNCSLCNKSFTFKGKLMDHRKFVHGISYTCEICNKRFNHRDNIRIHMATHETEEKFVCYICGYLTKRRQCLAVHMMRHEDKWVCHCNICNRGFFSYATLEQHMNSHTGEKPFTCETCGVNYSNYNTLWKHSRKFHPELYHNIFTCKVCGKVFMKEKSYHIHMASLHSKGNHFECDSCKKTFSKELSLLIHKRTHTNERPYCCKICGGAFTARKYLTKHMGVHKAKNYKCRFCYKKFMQEQALTNHERKHEEVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -